ID: uc002alb.3_intron_29_0_chr15_63040644_f.3p
GENE: (30)
chr15:63042401-63042650+


(1)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(23)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
CTCCCCTATAATGAGCATTGTGTTGCTAACAGGAAATCTGAAGTCATGATACCATGATGTAAATTCTCAAACATCTGAGTAAAAGTGATCATGACCAGAAACTTGTGTATGGAGGGAGAGTTGATAGTTGGCAGTTGATGTTGAATTTCTTTTGCTCTATGACATTTGCTTGCTTTTTATGTTGTGTTCTTCTTCTGTAGACTGTGAAGGGGATGTTGGACAATCCTAATGAACCTGTTAGTGACCTCTC
...................................................(((...(((.(((((((.....((((..((.((((..((.......)).)))).))..))))..))))))).)))..))).......................................................................................................................
............................................45.................................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................TACCATGATGTAAATTCTCAAACATCTGAGT..........................................................................................................................................................................311118.00118.0014.0023.0012.0015.0013.0012.00-3.003.003.00-3.003.003.00-3.00-1.00----1.002.00----1.001.00---------1.00-----1.00--
................................................ATACCATGATGTAAATTCTCAAACATCTGAGT..........................................................................................................................................................................32195.0095.0035.0028.009.00-1.00-5.004.002.001.004.001.00-----1.00-2.00------------------1.00-------1.00-
................................................ATACCATGATGTAAATTCTCAAACATCT..............................................................................................................................................................................2812.002.00------2.00-----------------------------------------
..................................................ACCATGATGTAAATTCTCAAACATCTGAGT..........................................................................................................................................................................3012.002.00--2.00---------------------------------------------
............................................................................................................................................................................................................TGAAGGGGATGTTGGACA............................1811.001.00---------------------1.00--------------------------
.................................................TACCATGATGTAAATGTTG......................................................................................................................................................................................191.000.00------------------1.00-----------------------------
................................................ATACCATGATGTAAATTCTCAAACAT................................................................................................................................................................................2611.001.00---------------------------------1.00--------------
........................................................................................................................................................................................................................TGGACAATCCTAATGAACCTGTTAGT........2611.001.00----------------------1.00-------------------------
.........................................................................................................................................................................................................................GGACAATCCTAATGAACCTGTTAGT........2511.001.00----------------1.00-------------------------------
.................................................TACCATGATGTAAATTCTCAAACATA...............................................................................................................................................................................2611.001.00-------------------------------1.00----------------
.................................................TACCATGATGTAAATTCTCAAACATCTGAGG..........................................................................................................................................................................311.000.00-----1.00------------------------------------------
................................................ATACCATGATGTAAATTCTCAAACA.................................................................................................................................................................................2511.001.00--1.00---------------------------------------------
....................................................................................................................................................................................................................................ATGAACCTGTTAGTGACC....1811.001.00----------------1.00-------------------------------
.................................................TACCATGATGTAAATTCTCAAACAT................................................................................................................................................................................2511.001.00------------------------------------1.00-----------
.................................................TACCATGATGTAAATGTAG......................................................................................................................................................................................191.000.00------------------1.00-----------------------------
................................................................................................................................................................................................................GGGGATGTTGGACAATC.........................1711.001.00---------------------------1.00--------------------
.........................................................................................................................TGATAGTTGGCAGTTAATC..............................................................................................................191.000.00------------------------1.00-----------------------
................................................ATACCATGATGTAAATTCTCAAACATCTGATA..........................................................................................................................................................................321.000.001.00-----------------------------------------------
...................................................................................................................................................................................................TGTAGACTGTGAAGGCATG....................................191.000.00------------------------------------------1.00-----
.............................................................................................................................................................................................................GAAGGGGATGTTGGACAA...........................1811.001.00--------------------1.00---------------------------
........................................................................................................................................................................................................ACTGTGAAGGGGATGTTGGAC.............................2111.001.00---------------------1.00--------------------------
......................................................................................................................................................................................................AGACTGTGAAGGGGATGTT.................................1911.001.00--------------------1.00---------------------------
..........................................................GTAAATTCTCAAACATCTGAGT..........................................................................................................................................................................2211.001.001.00-----------------------------------------------
.........................................................................................................................TGATAGTTGGCAGTTAATA..............................................................................................................191.000.00------------------------1.00-----------------------
................................................ATACCATGATGTAAATTCTCAAACATC...............................................................................................................................................................................2711.001.00----1.00-------------------------------------------
..................................................................................................................................................................................................................................TAATGAACCTGTTAGTGAC.....1911.001.00----------------------------------------1.00-------
................................................ATACCATGATGTAAATTCTCA.....................................................................................................................................................................................2111.001.00----------------------------------1.00-------------
......................................................................................................................................................................................................AGACTGTGAAGGGGATGTTGGACAATCCTAATG...................3311.001.00--------------------------------1.00---------------
......................................................................................................................................................................................................................GTTGGACAATCCTAATCA..................181.000.00-------------------------------------1.00----------
........................................................................................................................................................................................................ACTGTGAAGGGGATGTTGGA..............................2011.001.00------------------------------1.00-----------------
...........................................................................................................................................................................................................GTGAAGGGGATGTTGGACA............................1911.001.00--------------------------------------------1.00---
........................................................................................................................................................................................................................TGGACAATCCTAATGAACCTGTTAGTGA......2811.001.00-----------------------------------1.00------------
.........................................................................................................................................................................................................CTGTGAAGGGGATGTTGG...............................1820.500.50-----------------------------------------------0.50

Antisense strand
CTCCCCTATAATGAGCATTGTGTTGCTAACAGGAAATCTGAAGTCATGATACCATGATGTAAATTCTCAAACATCTGAGTAAAAGTGATCATGACCAGAAACTTGTGTATGGAGGGAGAGTTGATAGTTGGCAGTTGATGTTGAATTTCTTTTGCTCTATGACATTTGCTTGCTTTTTATGTTGTGTTCTTCTTCTGTAGACTGTGAAGGGGATGTTGGACAATCCTAATGAACCTGTTAGTGACCTCTC
...................................................(((...(((.(((((((.....((((..((.((((..((.......)).)))).))..))))..))))))).)))..))).......................................................................................................................
............................................45.................................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................................GTTCTTCTTCTGTAGCACA.............................................. 193.000.00--------------2.00--------------------------1.00------
...................................................................................................................................................................ATTTGCTTGCTTTTTACGG.................................................................... 191.000.00--------------------------1.00---------------------
.........................................................................................................................................................................................GTTCTTCTTCTGTAGTACA.............................................. 191.000.00--------------1.00---------------------------------
.....................................................................................................................................GTTGATGTTGAATTTACT................................................................................................... 181.000.00-------------------------------------------1.00----
...........................................................................................................................................................................GCTTTTTATGTTGTGTCT............................................................. 181.000.00-------------------------1.00----------------------
.........AATGAGCATTGTGTTGTCT.............................................................................................................................................................................................................................. 191.000.00-------------------------1.00----------------------