ID: uc002agz.2_intron_20_0_chr15_62201325_r.3p
GENE: (64)
chr15:62201275-62201524-


(1)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(1)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
TGGGGCAGGAGAATTGGTTGAACCTGGGAGATGGAGGTTGCAGTAACCCGAGATGGCGCCACTGTACTCCAGCCTGGGTGACAGCAAGACTCTGTCTCGAAAAAAACCAAAGCTTTTGTGTTTTACGTAATATTGAAATTCCATATGTAAGTGTAGATTAAACCAGTACATCAAACATACTTTTTTTTTTTCTACAATAGAATGGGGGTATCTTGGTGGATGTAAACACTGCCGAACATTCAACTGTCAT
..........................................................................................................................(((((((....((......))))))))).((((((..(((..((((.........))))....)))..))))))......................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................CATACTTTTTTTTTTTCTCAAG.....................................................229.000.008.001.00--------------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCG.........................................................187.000.002.004.00----1.00---------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCCAAG......................................................216.000.002.003.00----1.00---------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTTG.......................................................206.000.004.002.00--------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTTCTACAG.....................................................195.000.00-1.004.00-------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTTTG.....................................................234.000.002.001.001.00-------------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCCTTG......................................................213.000.001.002.00--------------------------------
...........................................................................................................................................................................CAAACATACTTTTTTTTTG............................................................193.000.00----2.00-1.00---------------------------
..................TGAACCTGGGAGATGGAGGTATT.................................................................................................................................................................................................................233.000.00---------3.00------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAAAG................................................223.000.002.001.00--------------------------------
...........................................................................................................................................................................CAAACATACTTTTTTTTTTTTTG........................................................232.000.00-1.00----1.00---------------------------
...................................................................................................................................................................................CTTTTTTTTTTTCTACATCAG..................................................212.000.002.00---------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTAG......................................................222.000.001.001.00--------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTG.......................................................212.000.001.001.00--------------------------------
................................................................................................................................................................................ATACTTTTTTTTTTTCTAAAG.....................................................212.000.001.00--------------------------------1.00
...........................................................................................................................................................................CAAACATACTTTTTTTTTTG...........................................................202.000.001.00---1.00-----------------------------
...........................................................................................................................................................................CAAACATACTTTTTTTTTTTTG.........................................................222.000.00-1.00--1.00-----------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCG.........................................................192.000.001.001.00--------------------------------
................................................................................................................................................................................ATACTTTTTTTTTTTCTACGGAG...................................................231.000.00--1.00-------------------------------
.............................................................................................................................................................................AACATACTTTTTTTTTTTCCCAT......................................................231.000.00----1.00-----------------------------
..........................................................................................................................................................................................................................................AACATTCAACTGTCACGA181.000.00--------1.00-------------------------
.............................................................................................................................................................................AACATACTTTTTTTTTTTCTTCTG.....................................................241.000.00-1.00--------------------------------
.................................................................................................................................................................................TACTTTTTTTTTTTCTCTAG.....................................................201.000.001.00---------------------------------
........................TGGGAGATGGAGGTTGCAGTAGA...........................................................................................................................................................................................................231.000.00------------------------1.00---------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTCTG......................................................211.000.001.00---------------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCCG........................................................191.000.00-1.00--------------------------------
..........................................................................................................................................................................................................................................AACATTCAACTGTCAGTG181.000.00-------1.00--------------------------
..........................................................................................................................................................................................................................................AACATTCAACTGTCACCA181.000.00----------1.00-----------------------
................................................................................................................................................................................ATACTTTTTTTTTTTCTGGC......................................................201.000.00-----1.00----------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTCAAA.....................................................221.000.001.00---------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTCTG.....................................................231.000.001.00---------------------------------
...........................................................................................................................................................................CAAACATACTTTTTTTTTTTG..........................................................211.000.00----1.00-----------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTGGT......................................................221.000.00--1.00-------------------------------
.......................CTGGGAGATGGAGGTTGCAGTAGGG..........................................................................................................................................................................................................251.000.00---------------------1.00------------
....................AACCTGGGAGATGGAGGTTGCAGTAATTTT........................................................................................................................................................................................................301.000.00-------1.00--------------------------
....................................................ATGGCGCCACTGTACTCCAGCCGGGC............................................................................................................................................................................261.000.00--1.00-------------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCCAAT......................................................211.000.001.00---------------------------------
...............................TGGAGGTTGCAGTAACTCTG.......................................................................................................................................................................................................201.000.00------------------1.00---------------
....GCAGGAGAATTGGTTGAACAACA...............................................................................................................................................................................................................................231.000.00--------------------------1.00-------
....................AACCTGGGAGATGGAGGTTGCTGCA.............................................................................................................................................................................................................251.000.00-----1.00----------------------------
....................................................................................................................................................................................................................TTGGTGGATGTAAACGTTG...................191.000.00-------1.00--------------------------
.......................................................................................................................................................................................................................................CCGAACATTCAACTGTCAT1911.001.00------------------------------1.00---
..............................................................................................................................................................................ACATACTTTTTTTTTTTCCTT.......................................................211.000.00--1.00-------------------------------
......AGGAGAATTGGTTGAACTCTG...............................................................................................................................................................................................................................211.000.00---------------------------1.00------
.................................................................................................................................................................................TACTTTTTTTTTTTCTATTG.....................................................201.000.00--1.00-------------------------------
.................................................................................................................................................................................................................................ACACTGCCGAACATTCAA.......1811.001.00--------------------1.00-------------
..................................................................................................................................................................................ACTTTTTTTTTTTCTACACG....................................................201.000.001.00---------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTCA......................................................221.000.00--------------------------------1.00-
.................TTGAACCTGGGAGATGGAGG.....................................................................................................................................................................................................................2001.001.00----------------1.00-----------------
...................................................................................................................................................................................CTTTTTTTTTTTCTACAATG...................................................201.000.00-------------1.00--------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTTCG.....................................................231.000.001.00---------------------------------
...........................................................................................................................................................................................................GGGGGTATCTTGGTGGATG............................1911.001.00----------------------1.00-----------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAG..................................................2011.001.001.00---------------------------------
...................................................................................................................................................................................CTTTTTTTTTTTCTACACAG...................................................201.000.001.00---------------------------------
.............................................................................................................................................................................................................GGGTATCTTGGTGGATAGGG.........................201.000.00----------1.00-----------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTAG.......................................................201.000.00------1.00---------------------------
............................................................................................................................................................................AAACATACTTTTTTTTTTTCTTG.......................................................231.000.001.00---------------------------------
...............................................................................................................................................................................................................................AAACACTGCCGAACATTCAACTGTCAT2711.001.00-----------------------------1.00----
..................................................................................................................................................................................ACTTTTTTTTTTTCTACAATTAG.................................................231.000.001.00---------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTCCG.....................................................231.000.00-1.00--------------------------------
............................................................................................................AAAGCTTTTGTGTTTGGTG...........................................................................................................................191.000.00--1.00-------------------------------
....................................................ATGGCGCCACTGTACTCCAGC.................................................................................................................................................................................2101.001.00-------------------1.00--------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTTAG.....................................................231.000.00-1.00--------------------------------
..........................................................................................................................................................................TCAAACATACTTTTTTTTTG............................................................201.000.001.00---------------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTCTTGAG.....................................................231.000.00--1.00-------------------------------
.................................................................................................................................................................................TACTTTTTTTTTTTCTATG......................................................191.000.00------1.00---------------------------
..............................................................................................................................................................................ACATACTTTTTTTTTTTGGCC.......................................................211.000.00--1.00-------------------------------
............................................................................................................................................................................AAACATACTTTTTTTTTTTCTG........................................................221.000.001.00---------------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTCTAG.....................................................221.000.00-1.00--------------------------------
...................................................................................................................................................................................CTTTTTTTTTTTCTACACCTG..................................................211.000.00----1.00-----------------------------
.................................................................................................................................................TGTAAGTGTAGATTATAT.......................................................................................181.000.00--------1.00-------------------------
.................................................................................................................................................................................TACTTTTTTTTTTTCTACCTT....................................................211.000.001.00---------------------------------
.........................................................................................................................................................................................TTTTTTCTACAATAGTGA...............................................181.000.00--------1.00-------------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCTTGG......................................................211.000.001.00---------------------------------
................................................CGAGATGGCGCCACTGTACTCCAGCCTGGGTTACA.......................................................................................................................................................................351.000.00------------1.00---------------------
...............................................................................................................................................................................CATACTTTTTTTTTTTCCCAG......................................................211.000.00-1.00--------------------------------

Antisense strand
TGGGGCAGGAGAATTGGTTGAACCTGGGAGATGGAGGTTGCAGTAACCCGAGATGGCGCCACTGTACTCCAGCCTGGGTGACAGCAAGACTCTGTCTCGAAAAAAACCAAAGCTTTTGTGTTTTACGTAATATTGAAATTCCATATGTAAGTGTAGATTAAACCAGTACATCAAACATACTTTTTTTTTTTCTACAATAGAATGGGGGTATCTTGGTGGATGTAAACACTGCCGAACATTCAACTGTCAT
..........................................................................................................................(((((((....((......))))))))).((((((..(((..((((.........))))....)))..))))))......................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAAGT................................................ 224.000.00---4.00------------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAT.................................................. 203.000.00---3.00------------------------------
.........................................................................CTGGGTGACAGCAAGACTTAT............................................................................................................................................................ 212.000.00-------2.00--------------------------
..................................................................CTCCAGCCTGGGTGACAGCAAGACTCAC............................................................................................................................................................ 282.000.00--2.00-------------------------------
...................................................................................GCAAGACTCTGTCTCGAAAAAACGCG............................................................................................................................................. 261.000.00-----1.00----------------------------
...................................................................................................AAAAAAACCAAAGCTTGA..................................................................................................................................... 181.000.00--1.00-------------------------------
.....................................................TGGCGCCACTGTACTCCAGCCTGGGTGACC....................................................................................................................................................................... 301.000.00-----1.00----------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAAAACG................................................. 211.000.00---1.00------------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAAAATG................................................. 211.000.00---1.00------------------------------
....................................................................................CAAGACTCTGTCTCGAAAGGCT................................................................................................................................................ 221.000.00--1.00-------------------------------
.....CAGGAGAATTGGTTGTTG................................................................................................................................................................................................................................... 181.000.00-------1.00--------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAAT................................................. 211.000.00---1.00------------------------------
....................................................................CCAGCCTGGGTGACAGCAAGGCG............................................................................................................................................................... 231.000.00--1.00-------------------------------
..............................................................TGTACTCCAGCCTGGGTGACAGTAAC.................................................................................................................................................................. 261.000.00----------------------------1.00-----
............................................................ACTGTACTCCAGCCTGGGTGATGCT..................................................................................................................................................................... 251.000.00--1.00-------------------------------
.....................................................................TTCGAGACAGAGTCTTGCTGTCACCCAGGCTG..................................................................................................................................................... 3211.001.00--1.00-------------------------------
..........................................................CCACTGTACTCCAGCCTGGGTAAAA....................................................................................................................................................................... 251.000.00--------------1.00-------------------
.......................................................................................................................................AAATTCCATATGTAAGTCCG............................................................................................... 201.000.00---------------1.00------------------
...................................................GATGGCGCCACTGTACTCCAGCCTGGGTGACCC...................................................................................................................................................................... 331.000.00-----1.00----------------------------
..................................................................CTCCAGCCTGGGTGACAGCAAGACTCTGTCGC........................................................................................................................................................ 321.000.00--1.00-------------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAGT................................................. 211.000.00---1.00------------------------------
.....................................................ACCCAGGCTGGAGTACAGTGGCGCCA........................................................................................................................................................................... 2601.001.00-----------------------1.00----------
......................................................................................AGACTCTGTCTCGAAAAAAGGTG............................................................................................................................................. 231.000.00--1.00-------------------------------
...................................................................................GCAAGACTCTGTCTCGAAAAACCC............................................................................................................................................... 241.000.00-----1.00----------------------------
..........................................................................................TTTTTTCGAGACAGA................................................................................................................................................. 1501.001.00-----------------1.00----------------
...........................................................................................CTGTCTCGAAAAAAACCAAAGG......................................................................................................................................... 221.000.00--1.00-------------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAATAACG................................................ 221.000.00---1.00------------------------------
.............................................................CTGTACTCCAGCCTGGGTGACAGCACGGC................................................................................................................................................................ 291.000.00--1.00-------------------------------
....................................................................................................................................................................................TTTTTTTTTTTCTACAAAATT................................................. 211.000.00---1.00------------------------------
...................................................................................................................................................................................TTGTAGAAAAAAAAAAAG..................................................... 1860.170.17---0.17------------------------------
.................................................................................TTTTTTCGAGACAGAGTCTTGCTG................................................................................................................................................. 2470.140.14-----0.14----------------------------