ID: uc002ago.2_intron_5_0_chr15_60740345_r.5p
GENE: (10)
chr15:60740847-60741096-


(2)
BRAIN 		(18)
BREAST 		(19)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(1)
HELA 		(6)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
UTERUS

Sense strand
TAGTTGGCCGAAATCTGGATGGCCTTCTGCATTTCAGAAGCCAAAAGGACGTAAGTAAATATTTACAAAGAGCTTACAGTGTTTTACTTGTTCTTTTTCCTTAGGTTTTTCTCCCTCGTTCCTTTACTTTGTCATAACCTGTTTTGTAATTGTCATATAGTCACTGATATTTCATTTTTTCGATCTATTGATCAGTATTTCAGCTTCCAAAATAATCCTCTCTAGATATGTATACAAAGGCGTATGGGTC
..................................................................(((((((....((((...)))).)))))))......(((........)))......................................................................................................................................
............................................................61...............................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR189787SRR189783TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR040017(GSM532902)
G645T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR189786SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
.................................................................CAAAGAGCTTACAGTGCAGG.....................................................................................................................................................................20420.000.752.503.750.752.250.50---0.250.751.251.25--0.250.25--0.250.25------0.75--0.250.50-0.25-----0.50--0.50--0.50--0.25--0.250.250.250.25--0.25-0.25--0.250.250.25
.................................................................CAAAGAGCTTACAGTGCAG......................................................................................................................................................................19416.500.758.751.000.50-1.25---0.250.75------0.25--0.75-0.75----0.25-0.75----------0.50-----0.25--0.25-----0.25---------
.................................................................CAAAGAGCTTACAGTGTAG......................................................................................................................................................................197.000.007.00---------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGCA.......................................................................................................................................................................1846.500.75-2.75-0.50----1.250.250.250.25--------------------0.25--0.50-------------------0.25----0.25---
.................................................................CAAAGAGCTTACAGTGTAGG.....................................................................................................................................................................202.000.00--------------1.00------------1.00------------------------------------
.................................................................CAAAGAGCTTACAGTGTAGGT....................................................................................................................................................................212.000.00-1.00---------------------1.00----------------------------------------
..................................................................AAAGAGCTTACAGTGCAGG.....................................................................................................................................................................192.000.002.00---------------------------------------------------------------
..................................................................AAAGAGCTTACAGTGCAG......................................................................................................................................................................182.000.001.00-1.00-------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGTA.......................................................................................................................................................................181.000.00-1.00--------------------------------------------------------------
.........GAAATCTGGATGGCCTTCTGCATTTC.......................................................................................................................................................................................................................2621.001.00------------1.00---------------------------------------------------
.................................................................CAAAGAGCTTACAGTAAA.......................................................................................................................................................................181.000.00----------------1.00-----------------------------------------------
.................................................................CAAAGAGCTTACAGTGTGTTG....................................................................................................................................................................211.000.001.00---------------------------------------------------------------
.......................................................................................................GGTTTTTCTCCCTCGGTTT................................................................................................................................191.000.00-------------1.00--------------------------------------------------
..................................................................AAAGAGCTTACAGTGTATC.....................................................................................................................................................................191.000.00-----------------1.00----------------------------------------------
.......CCGAAATCTGGATGGCCTTCT..............................................................................................................................................................................................................................2121.001.00----------------------------------0.50-------0.50---------------------
.........................TCTGCATTTCAGAAGCCAAAAGGACGTAAGT..................................................................................................................................................................................................3111.001.00-------------------------1.00--------------------------------------
...........................................................................ACAGTGTTTTACTTGTTCTTTTCCC......................................................................................................................................................251.000.00-----1.00----------------------------------------------------------
..................................................................AAAGAGCTTACAGTGAAAG.....................................................................................................................................................................191.000.001.00---------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGTAGAT....................................................................................................................................................................211.000.00------------------------1.00---------------------------------------
.......................................................................................................................................................................................................................................ATACAAAGGCGTATGGGTCCTGC231.000.00-----1.00----------------------------------------------------------
.................................................................CAAAGAGCTTACAGTACA.......................................................................................................................................................................181.000.00-1.00--------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTG.........................................................................................................................................................................1640.750.750.50-----------------0.25---------------------------------------------
.................................................................CAAAGAGCTTACAGTGAAA......................................................................................................................................................................1940.750.75-----------------------------0.250.25----------------------------0.25----
.................................................................CAAAGAGCTTACAGTGC........................................................................................................................................................................1740.750.750.25-----------------0.25--------------------------------------0.25------
.................................................................CAAAGAGCTTACAGTGCAGT.....................................................................................................................................................................2040.750.75-0.50-----------------------------------------------0.25--------------
.................................................................CAAAGAGCTTACAGTGCAA......................................................................................................................................................................1940.750.75-0.25---------------------------0.25----------------0.25-----------------
.................................................................CAAAGAGCTTACAGTGGTAG.....................................................................................................................................................................2040.500.750.50---------------------------------------------------------------
.........................TCTGCATTTCAGAAGCCAAAAGGACG.......................................................................................................................................................................................................2620.500.50-------------------------------------------0.50--------------------
........CGAAATCTGGATGGCCTTCTGCA...........................................................................................................................................................................................................................2320.500.50---------------------------------0.50------------------------------
..........AAATCTGGATGGCCTTCT..............................................................................................................................................................................................................................1820.500.50------------0.50---------------------------------------------------
.................................................................CAAAGAGCTTACAGTGAAGG.....................................................................................................................................................................2040.500.75-0.25----------------0.25---------------------------------------------
.................................................................CAAAGAGCTTACAGTGCAGC.....................................................................................................................................................................2040.500.750.25---0.25-----------------------------------------------------------
.........GAAATCTGGATGGCCTTCTGCATT.........................................................................................................................................................................................................................2420.500.50-------------------------------0.50--------------------------------
..........................................................................................TTCTTTTTCCTTAGGTTTT.............................................................................................................................................1920.500.50----------------------------------------0.50-----------------------
.................................................................CAAAGAGCTTACAGTGCAGA.....................................................................................................................................................................2040.500.75--0.50-------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGCAT......................................................................................................................................................................1940.500.750.250.25--------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGAAG......................................................................................................................................................................1940.500.750.50---------------------------------------------------------------
..........................CTGCATTTCAGAAGCCAAAAGGACG.......................................................................................................................................................................................................2520.500.50------------------------------------0.50---------------------------
.................................................................CAAAGAGCTTACAGTGCG.......................................................................................................................................................................1840.250.750.25---------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGCTAC.....................................................................................................................................................................2040.250.75-0.25--------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGCCG......................................................................................................................................................................1940.250.75---------------------0.25------------------------------------------
.................................................................CAAAGAGCTTACAGTGCAC......................................................................................................................................................................1940.250.750.25---------------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGCTA......................................................................................................................................................................1940.250.75----0.25-----------------------------------------------------------
.................................................................CAAAGAGCTTACAGTGGTTG.....................................................................................................................................................................2040.250.750.25---------------------------------------------------------------

Antisense strand
TAGTTGGCCGAAATCTGGATGGCCTTCTGCATTTCAGAAGCCAAAAGGACGTAAGTAAATATTTACAAAGAGCTTACAGTGTTTTACTTGTTCTTTTTCCTTAGGTTTTTCTCCCTCGTTCCTTTACTTTGTCATAACCTGTTTTGTAATTGTCATATAGTCACTGATATTTCATTTTTTCGATCTATTGATCAGTATTTCAGCTTCCAAAATAATCCTCTCTAGATATGTATACAAAGGCGTATGGGTC
..................................................................(((((((....((((...)))).)))))))......(((........)))......................................................................................................................................
............................................................61...............................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR189787SRR189783TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR040017(GSM532902)
G645T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR189786SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
.........................................................................................GTTCTTTTTCCTTAGTCTG.............................................................................................................................................. 192.000.00------2.00---------------------------------------------------------
.......................................................................................TTGTTCTTTTTCCTTAGCG................................................................................................................................................ 191.000.00----------------------1.00-----------------------------------------
..........................CTGCATTTCAGAAGCTCG.............................................................................................................................................................................................................. 181.000.00--------------------1.00-------------------------------------------
............................................................................................................AAAGGAACGAGGGAGAA............................................................................................................................. 1711.001.00---------------1.00------------------------------------------------
.........................................................................................................................................................................................................................CTCTCTAGATATGTAATAG.............. 191.000.001.00---------------------------------------------------------------
.........................................................................................GTTCTTTTTCCTTAGGTAAT............................................................................................................................................. 201.000.00-------1.00--------------------------------------------------------
........................................................................................TGTTCTTTTTCCTTAGGTAT.............................................................................................................................................. 201.000.00-------1.00--------------------------------------------------------
...............................................................................................................................................................................................TGGAAGCTGAAATACTGA......................................... 1820.500.50-------------------------------------0.50--------------------------
......................................................................................................................................................................................TACTGATCAATAGAT..................................................... 1540.500.50-------------0.50--------------------------------------------------