ID: uc002agn.2_intron_1_0_chr15_60641397_r.3p
GENE: (12)
chr15:60641347-60641596-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(3)
LIVER 		(2)
OTHER 		(26)
SKIN 		(1)
UTERUS

Sense strand
ATAATTTTGTGCATGAAACAGTTTGTGTTAAGTGCTGTATGTGGAATTTTTCATTGTGGCATCATGTCGGCACTGAAAAAGTTTTGGATTTTGGAGCATTTTAGATTTCAGATTTTCAGATCAGGGATGCTCAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAGGGCAAGGGGACGCGAGATAAGGTCCTGATCAGAATCATGGTCTCCCGCAG
..................................................(((.((((((.....)))).)).)))....(((((.......))))).........................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................TTTTGGATTTTGGAGCTATC.....................................................................................................................................................20022.001.0022.00---------------------------------------------------------
.................................................................................................................................CTCAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAG..................................................71116.0016.00-16.00--------------------------------------------------------
..................................................................................TTTGGATTTTGGAGCTATC.....................................................................................................................................................1912.000.0012.00---------------------------------------------------------
...................................................................................................................................CAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAG..................................................6918.008.00--8.00-------------------------------------------------------
...................................................................................................................................CAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTT.....................................................6618.008.00-8.00--------------------------------------------------------
.....................................................................................................................................ACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAG..................................................6714.004.00--4.00-------------------------------------------------------
............................................................ATCATGTCGGCACTGAAAA...........................................................................................................................................................................1912.002.00---------1.00------1.00-----------------------------------------
..................................................................................................................................TCAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAG..................................................7012.002.00--2.00-------------------------------------------------------
...................................................................................................................TCAGATCAGGGATGCTCAACCTGTC..............................................................................................................252.000.00---2.00------------------------------------------------------
......................................................................................................................................................................................................................................AGAATCATGGTCTCCC....1631.331.33----------1.33-----------------------------------------------
............................................................................AAAAGTTTTGGATTT...............................................................................................................................................................1501.001.00----1.00-----------------------------------------------------
...............................................................................................................................................................................................................................CCTGATCAGAATCATGGTCTCCCGC..2521.001.00-----------------------1.00----------------------------------
............................................................................................................................................................................................CTTGATTTTCAGGGCGCTA...........................................191.000.00-----1.00----------------------------------------------------
..............................................................................................AGCATTTTAGATTTCCTCC.........................................................................................................................................191.000.00-------------------------1.00--------------------------------
........................................................TGGCATCATGTCGGCACTGAAAAAGTT.......................................................................................................................................................................2711.001.00--------------1.00-------------------------------------------
.................................................................................TTTTGGATTTTGGAGC.........................................................................................................................................................1601.001.00----1.00-----------------------------------------------------
.......................................................................................ATTTTGGAGCATTTTAGATTTCGGAC.........................................................................................................................................261.000.00---1.00------------------------------------------------------
....................................................................................................................................AACCTGTAGACGCTTTCTTTAA................................................................................................2211.001.00------------------------1.00---------------------------------
....................................................................................................................CAGATCAGGGATGCTGGCT...................................................................................................................191.000.00------------------------------1.00---------------------------
...........................................................CATCATGTCGGCACTGAAAAAGTTTT.....................................................................................................................................................................2611.001.00----------------------1.00-----------------------------------
..................................CTGTATGTGGAATTTTTCATTGTGGC..............................................................................................................................................................................................2611.001.00----------------------------1.00-----------------------------
...........................................................................................................................................................................................................AAGGGGACGCGAGATAAGG............................1921.001.00-------------------------------0.500.50-------------------------
...............................................................................................................................TGCTCAACCTGTAGACGCTTT......................................................................................................2111.001.00-----------------1.00----------------------------------------
.................................................................................................................................CTCAACCTGTAGACGCTTTCTTTAACGA.............................................................................................2811.001.00-------1.00--------------------------------------------------
................................................................................................................................................................................AACAAATATCAACTTGATTTTCAG..................................................2411.001.00-----------------------------1.00----------------------------
............................................................................................GGAGCATTTTAGATTCTTG...........................................................................................................................................191.000.00---------------------1.00------------------------------------
....................................................ATTGTGGCATCATGTCGG....................................................................................................................................................................................1811.001.00------------1.00---------------------------------------------
..............................................................................AAGTTTTGGATTTTGGAGCACC......................................................................................................................................................221.000.00-------------1.00--------------------------------------------
...................................................................................................................................................................................AAATATCAACTTGATTTTCAG..................................................2111.001.00-----------1.00----------------------------------------------
....................................................................................................................................................................................................................CGAGATAAGGTCCTGATCAGAATCATGGT.........2921.001.00--------1.00-------------------------------------------------
..........................................................................................................................................................................................................CAAGGGGACGCGAGATAAGGT...........................2121.001.00------------------------------------------0.50--0.50------------
....................................................................................................................................AACCTGTAGACGCTTTCTTTAACGA.............................................................................................2511.001.00------1.00---------------------------------------------------
...................................................................................................................................CAACCTGTAGACGCTTTCTTTAACGATA...........................................................................................2811.001.00-------------------1.00--------------------------------------
....................................................................................................................................AACCTGTAGACGCTTTCTTTAACGATAA..........................................................................................2811.001.00-----1.00----------------------------------------------------
......................................................................................................................................................................................................................AGATAAGGTCCTGATCAGA.................1940.750.75---------------------------------------0.50----------------0.25-
..............................................................................................................................................................................................................................TCCTGATCAGAATCATG...........1730.670.67---------------------------------0.67------------------------
..............................................................................................................................................................................................................GGGACGCGAGATAAGGTCCTGATC....................2420.500.50-----------------------------------0.50----------------------
....................................................................................................................................................................................................................CGAGATAAGGTCCTGATCAGAATCATGG..........2820.500.50-----------------------------------------0.50----------------
..............................................................................................................................................................................................................GGGACGCGAGATAAGGTC..........................1820.500.50------------------------------------------------0.50---------
................................................................................................................................................................................................................GACGCGAGATAAGGTCCTGATCAGAA................2620.500.50-------------------------------------0.50--------------------
.....................................................................................................................................................................................................................................CAGAATCATGGTCTCCCGC..1920.500.50----------------------------------------------0.50-----------
.......................................................................................................................................................................................................................................GAATCATGGTCTCCCGC..1720.500.50----------------------------------------0.50-----------------
..........................................................................................................................................................................................................CAAGGGGACGCGAGATAAG.............................1920.500.50------0.50---------------------------------------------------
......................................................................................................................................................................................................AGGGCAAGGGGACGCGAGATA...............................2120.500.50--------------------0.50-------------------------------------
............................................................................................................................................................................................................AGGGGACGCGAGATAAGG............................1820.500.50-------------------------------0.50--------------------------
...................................................................................................................................................................................................................GCGAGATAAGGTCCTGATCAGAATCATGGTCTC......3320.500.50----------------------------------0.50-----------------------
...........................................................................................................................................................................................................AAGGGGACGCGAGAT................................1520.500.50------------------------------------0.50---------------------
...................................................................................................................................................................................................................GCGAGATAAGGTCCTGAT.....................1820.500.50--------------------------------------0.50-------------------
...................................................................................................................................................................................................................GCGAGATAAGGTCCTGATCAGAA................2320.500.50---------------------------0.50------------------------------
..................................................................................................................................................................................................................CGCGAGATAAGGTCCTG.......................1720.500.50--------------------------------------------0.50-------------
..................................................................................................................................................................................................................................GATCAGAATCATGGTCTCCCGC..2220.500.50-------0.50--------------------------------------------------
.........................................................................................................................................................................................................GCAAGGGGACGCGAGATA...............................1820.500.50-------------------------------------------0.50--------------
......................................................................................................................................................................................................AGGGCAAGGGGACGCGA...................................1720.500.50--------------------0.50-------------------------------------
.............................................................................................................................................................................................................GGGGACGCGAGATAAGGTCCTGATCA...................2620.500.50---------------------------0.50------------------------------
..................................................................................................................................................................................................................CGCGAGATAAGGTCCTGATCAG..................2220.500.50--------0.50-------------------------------------------------
.......................................................................................................................................................................................................................GATAAGGTCCTGATCAGAATCATGGT.........2630.330.33-----------------------------------------------------0.33----
....................................................................................................................................................................................................................CGAGATAAGGTCCTGATC....................1830.330.33--------------------------------------------------0.33-------
.........................................................................................................................................................................................................................TAAGGTCCTGATCAGAATCATGG..........2330.330.33-----------0.33----------------------------------------------
.............................................................................................................................................................................................................................GTCCTGATCAGAATCATG...........1830.330.33---------0.33------------------------------------------------
................................................................................................................................................................................................................................CTGATCAGAATCATGGT.........1730.330.33---------------------------------------------------0.33------
....................................................................................................................................................................................................................CGAGATAAGGTCCTGATCAGAA................2230.330.33-------------------------------------------------0.33--------
.....................................................................................................................................................................................................................GAGATAAGGTCCTGAT.....................1630.330.33-------------------------------------------------------0.33--
.........................................................................................................................................................................................................................TAAGGTCCTGATCAGAATCATGGT.........2430.330.33------------------------------------------------------0.33---
....................................................................................................................................................................................................................CGAGATAAGGTCCTGATCA...................1930.330.33----------------------------------------------------0.33-----
......................................................................................................................................................................................................................AGATAAGGTCCTGATCAGAATCAT............2440.250.25----0.25-----------------------------------------------------
....................................................................................................................................................................................................................CGAGATAAGGTCCTG.......................1540.250.25--------------------------------0.25-------------------------
..................................................................................................................TTCAGATCAGGGATGCTCAACCTGT...............................................................................................................2540.250.25-------------0.25--------------------------------------------
........................................................................................................................................................................................................................ATAAGGTCCTGATCAGAATC..............2040.250.25------------0.25---------------------------------------------
......................................................................................................................................................................................................................AGATAAGGTCCTGATCAGAA................2040.250.25-----------------------------------------------0.25----------
........................................................................................................................................................................................................................ATAAGGTCCTGATCAGA.................1740.250.25---------------------------------------------------------0.25
...........................................................................................................................................................................................................................AGGTCCTGATCAGAATC..............1740.250.25-----------------------------------------------0.25----------
.........................................................................................................................................................................................................................TAAGGTCCTGATCAG..................1560.170.17--------------------------------0.17-------------------------
.........................................................................TGAAAAAGTTTTGGATT................................................................................................................................................................1790.110.11-----0.11----------------------------------------------------

Antisense strand
ATAATTTTGTGCATGAAACAGTTTGTGTTAAGTGCTGTATGTGGAATTTTTCATTGTGGCATCATGTCGGCACTGAAAAAGTTTTGGATTTTGGAGCATTTTAGATTTCAGATTTTCAGATCAGGGATGCTCAACCTGTAGACGCTTTCTTTAACGATAACATTCTCAGCGAATGTAACAAATATCAACTTGATTTTCAGGGCAAGGGGACGCGAGATAAGGTCCTGATCAGAATCATGGTCTCCCGCAG
..................................................(((.((((((.....)))).)).)))....(((((.......))))).........................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................TTAAGTGCTGTATGTGAT............................................................................................................................................................................................................. 181.000.00--------------------------1.00-------------------------------
...........................................................................AAAAAGTTTTGGATTTTATC........................................................................................................................................................... 201.000.00---------------1.00------------------------------------------
........................................................................................................................................................................................................................ATAAGGTCCTGATCAATG................ 181.000.00------------------1.00---------------------------------------
.........................................................................AATCCAAAACTTTTTCA................................................................................................................................................................ 1790.110.11--------------0.11-------------------------------------------