ID: uc002afz.2_intron_1_0_chr15_59399650_f
GENE: (2)
chr15:59399600-59399805+


(1)
AGO2.ip 		(11)
B-CELL 		(5)
BREAST 		(20)
CELL-LINE 		(3)
FIBROBLAST 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TAGAAGAAATTGGAAATAGAGTTACAACCAGAGCAGCACAAGTAGCTAAGGTAACAATGATGAAGACTGAATGTGAATACAGAGGCCGATTCTGTATAGTGCTGAGTCCCACAACGCTGGCTGTCTTGCGCTATTCATGTTTCTTTTTCCTTATAGAAAGCTCAGAACACCAAAGTTCCAGTTCAACCCACCAAAACAACAAATGT
................................................................((((....(((.((((((((.....))))))))..)))..))))..................................................................................................
..................................................51.............................................................114..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343334SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
...................................................TAACAATGATGAAGACTGAAT......................................................................................................................................21116.0016.00-3.001.00-----2.00---2.001.001.00--1.00--------1.00--1.00-------1.00------1.00--1.00--------
....................................................AACAATGATGAAGACTGAAT......................................................................................................................................20114.0014.00-1.00-1.00-1.00-------1.001.00---1.00---1.00-1.00-----1.00---1.00-1.00----1.001.00---1.00---------
..........TGGAAATAGAGTTACAACCAGAGCAGC.........................................................................................................................................................................27112.0012.0012.00-------------------------------------------------------
..................................................GTAACAATGATGAAGACTGAATGTGA..................................................................................................................................2614.004.00--2.00-------2.00---------------------------------------------
...................................................TAACAATGATGAAGACTGAATGTGAATACAGAGG.........................................................................................................................3412.002.00---------------------------------------1.00--------1.00-------
.........TTGGAAATAGAGTTACAACCAGAGCAGC.........................................................................................................................................................................2812.002.002.00-------------------------------------------------------
..................................................GTAACAATGATGAAGACTGAATG.....................................................................................................................................2312.002.00-------1.00---------------------------1.00--------------------
....AGAAATTGGAAATAGAGTTA......................................................................................................................................................................................2012.002.00-2.00------------------------------------------------------
................................GCAGCACAAGTAGCTAAG............................................................................................................................................................1822.002.00-------------------------------------------1.00-----1.00------
.....................................................................................................................................................................................TTCAACCCACCAAAACAACAAATG.2412.002.00------2.00-------------------------------------------------
...........................................................................................................................................................................................CCACCAAAACAACAAATG.1821.501.50----1.00----0.50----------------------------------------------
...................................................TAACAATGATGAAGACTG.........................................................................................................................................1811.001.00-----------------------1.00--------------------------------
..................................................GTAACAATGATGAAGACTGAATGTA...................................................................................................................................2511.001.00-------------------1.00------------------------------------
.......................ACAACCAGAGCAGCACAAGCAGC................................................................................................................................................................231.000.00----------------------------------------1.00---------------
..................................................GTAACAATGATGAAGACTGAAT......................................................................................................................................2211.001.00---------------------------------------------1.00----------
..........................................................................................................................................................................................CCCACCAAAACAACAAGTG.191.000.00---------1.00----------------------------------------------
..................................................GTAACAATGATGAAGACTGAATGTAA..................................................................................................................................2611.001.00-------1.00------------------------------------------------
.........................................................TGATGAAGACTGAATGCAA..................................................................................................................................191.000.00--------------------------------1.00-----------------------
..................................................GTAACAATGATGAAGACTGAATGT....................................................................................................................................2411.001.00---1.00----------------------------------------------------
.............AAATAGAGTTACAACCAGAGCAGCACAAGCAG.................................................................................................................................................................321.000.00--------------------------------------------------1.00-----
......................................................CAATGATGAAGACTGAAT......................................................................................................................................1811.001.00-----------1.00--------------------------------------------
..................GAGTTACAACCAGAGCAGC.........................................................................................................................................................................1911.001.00----------------1.00---------------------------------------
...................................................TAACAATGATGAAGACTGAATGTGAATACAGAGGCCGATTCTGTATAGTGCTGAGT...................................................................................................5611.001.00---------------------------1.00----------------------------
..................................................GTAACAATGATGAAGACTGAA.......................................................................................................................................2111.001.00--1.00-----------------------------------------------------
......................................................CAATGATGAAGACTGAATGTG...................................................................................................................................2111.001.00-----------1.00--------------------------------------------
................................................AGGTAACAATGATGAAGACTGAATGTGA..................................................................................................................................2811.001.00--------------------1.00-----------------------------------
......................................................................................................................................................................................TCAACCCACCAAAACAACAAACAA241.000.00----1.00---------------------------------------------------
............................................................................................TGTATAGTGCTGAGTACCC...............................................................................................191.000.00---------------------------------1.00----------------------
...................................................TAACAATGATGAAGACTGAGA......................................................................................................................................211.000.00----------------------------1.00---------------------------
..................................................GTAACAATGATGAAGACTGAATGTG...................................................................................................................................2511.001.00-----1.00--------------------------------------------------
..................................................GTAACAATGATGAAGACTGAATGTGAATAC..............................................................................................................................3011.001.00-------------------------1.00------------------------------
..................................................GTAACAATGATGAAGACTGAAAA.....................................................................................................................................2311.001.00---1.00----------------------------------------------------
....................................................AACAATGATGAAGACTG.........................................................................................................................................1731.001.00---------------------1.00----------------------------------
.........................................................................................................................................................................................ACCCACCAAAACAACAAATG.2020.500.50---------0.50----------------------------------------------
...................................................TAACAATGATGAAGACT..........................................................................................................................................1720.500.50----------------------------------------------------0.50---

Antisense strand
TAGAAGAAATTGGAAATAGAGTTACAACCAGAGCAGCACAAGTAGCTAAGGTAACAATGATGAAGACTGAATGTGAATACAGAGGCCGATTCTGTATAGTGCTGAGTCCCACAACGCTGGCTGTCTTGCGCTATTCATGTTTCTTTTTCCTTATAGAAAGCTCAGAACACCAAAGTTCCAGTTCAACCCACCAAAACAACAAATGT
................................................................((((....(((.((((((((.....))))))))..)))..))))..................................................................................................
..................................................51.............................................................114..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343334SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................................TTGGTGGGTTGAACT............ 1541.001.00---------------0.25-----------------------------------0.50--0.25-
.....................................................................................CCGATTCTGTATAGTGCTGGTC................................................................................................... 221.000.00-------------------------------1.00------------------------
.........................................................................................GGGACTCAGCACTATACAGAA................................................................................................ 2111.001.00--------------------------------------1.00-----------------
................................................................................................................................ATAAGGAAAAAGAAACATGAATAGCG.................................................... 2611.001.00---------------1.00----------------------------------------
...................................................................................................................................................................................TTTGGTGGGTTGAACT........... 1620.500.50-----------------------------------------------------0.50--
....................................................................................................................................................................................TTTGGTGGGTTGAAC........... 1550.200.20-------------------------------------------------------0.20