ID: uc001zyk.1_intron_6_0_chr15_50763993_f.5p
GENE: USP8(7)
chr15:50763943-50764192+


(1)
AGO1.ip 		(2)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(3)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(13)
SKIN 		(2)
XRN.ip

Sense strand
ATTTACAGATTGGAACAACTCTCCGGAGTCTGAAAGATGCACTTTTCAAGGTTTGCAAGTTTCATTGTTAGTTTATTGTAATTGCAGGGCATCTCTGGTTGTTAGAAAGGCATGTTAACTAGTTGTTTATCTTAAATACTAAAAGATTCATCATGCCTTTTTTTTTTTTTTTTGAGACTGAGTCTCACTCTGTTGCCCAAGCTAGAGTACAGTGGCGTGATCTCAGCTCACTGCAACCTCCGCGTCCCAG
........................................................................................................((((((((((.........((...(((((.........))))).)).)))))))))).........................................................................................
........................................................................................................105........................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................TCCGGAGTCTGAAAGATGCATT...............................................................................................................................................................................................................2216.001.00--6.00-------------------------------------------
......................CCGGAGTCTGAAAGATGCA.................................................................................................................................................................................................................1914.004.00--------------1.001.00--1.00-------1.00-------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTCTGG..........................................................................243.000.002.001.00--------------------------------------------
.....CAGATTGGAACAACTCTCCGGAGT.............................................................................................................................................................................................................................2413.003.00-----3.00----------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTCGAG.............................................................................213.000.001.002.00--------------------------------------------
.......................CGGAGTCTGAAAGATGCA.................................................................................................................................................................................................................1812.002.00-----------------------1.00---1.00------------------
.............................................................................................................GCATGTTAACTAGTTACGC..........................................................................................................................192.000.00------------------------1.00-------1.00-------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTTCGG..........................................................................242.000.002.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTTGGG..........................................................................242.000.002.00---------------------------------------------
....................CTCCGGAGTCTGAAAGATGCAC................................................................................................................................................................................................................2212.002.00---------2.00------------------------------------
.....CAGATTGGAACAACTCTCCGGAGTC............................................................................................................................................................................................................................2512.002.00----2.00-----------------------------------------
....................................................................................................................................................................................AGTCTCACTCTGTTGCCCAAGCCGGC............................................262.000.002.00---------------------------------------------
....ACAGATTGGAACAACTCTCCGGAGTCTGAAAGATG...................................................................................................................................................................................................................3512.002.00------------2.00---------------------------------
.............................................................................................................GCATGTTAACTAGTTACG...........................................................................................................................182.000.00------1.00---------------------------1.00-----------
.....................................................................................................................................................................TTTTTTTTGAGACTGAGA...................................................................182.000.00-------2.00--------------------------------------
...TACAGATTGGAACAACTCTCCGGAGTC............................................................................................................................................................................................................................2711.001.00-------------------------1.00--------------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTTGAGCTGG......................................................................271.000.00-1.00--------------------------------------------
.....CAGATTGGAACAACTCTCCGGAGTCTGAA........................................................................................................................................................................................................................2911.001.00--------1.00-------------------------------------
.......................................................................................................................................................CATGCCTTTTTTTTTTTTTTAG.............................................................................221.000.001.00---------------------------------------------
........ATTGGAACAACTCTCCGGAGTCTGAAAGA.....................................................................................................................................................................................................................2911.001.00-----------1.00----------------------------------
.......................................................................................................................................................................................................................CGTGATCTCAGCTCACGTT................191.000.00-------------------1.00--------------------------
......................CCGGAGTCTGAAAGATGCACT...............................................................................................................................................................................................................2111.001.00------------------------------1.00---------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCGGGT...231.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTCGAG..............................................................................201.000.001.00---------------------------------------------
...TACAGATTGGAACAACTCT....................................................................................................................................................................................................................................1911.001.00----------------1.00-----------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTGGGC...............................................................................191.000.001.00---------------------------------------------
..TTACAGATTGGAACAACT......................................................................................................................................................................................................................................1811.001.00-------------------------------------1.00--------
....................................................................................................................................................................................AGTCTCACTCTGTTGCCCAAG.................................................2101.001.00-------------------------------1.00--------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTTGTATG........................................................................261.000.00-1.00--------------------------------------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTCCCG..........................................................................231.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTTGGGGA........................................................................261.000.001.00---------------------------------------------
.....................................................................................................................................................................................................................................ACTGCAACCTCCGCGTCCAGGG221.000.001.00---------------------------------------------
......................................................................GTTTATTGTAATTGCATTGC................................................................................................................................................................201.000.00----------------------1.00-----------------------
.................................................................................................................................................................................................................CAGTGGCGTGATCTCAGCTCTAG..................231.000.00-----------1.00----------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCGTCCAGG261.000.001.00---------------------------------------------
...........................................................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCCGCGTG....271.000.001.00---------------------------------------------
......................CCGGAGTCTGAAAGATGC..................................................................................................................................................................................................................1811.001.00---1.00------------------------------------------
......................................................................................................................................................TCATGCCTTTTTTTTTTTAGG...............................................................................211.000.00-1.00--------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTCCT...........................................................................231.000.001.00---------------------------------------------
......................................................................................................................................................TCATGCCTTTTTTTTTTTTTTTCTG...........................................................................251.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTTCTTG.........................................................................251.000.001.00---------------------------------------------
......................................................................................................................................................................................................AAGCTAGAGTACAGTGGCGAAA..............................221.000.00----1.00-----------------------------------------
.......GATTGGAACAACTCTCCGGAGTCTGAAA.......................................................................................................................................................................................................................2811.001.00-------------1.00--------------------------------
..............................................................................................CTGGTTGTTAGAAAGGCATGT.......................................................................................................................................2111.001.00-----------------------------------1.00----------
................................................................................................................................................................................................................ACAGTGGCGTGATCTCAGCTGACC..................241.000.00-1.00--------------------------------------------
.......................................................................................................................................................CATGCCTTTTTTTTTTTTTTTTGG...........................................................................241.000.001.00---------------------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCGTCCCCAG271.000.001.00---------------------------------------------
.............................................................................................................................................................................................................AGTACAGTGGCGTGATCTCAGCCG.....................241.000.00-1.00--------------------------------------------
......................CCGGAGTCTGAAAGA.....................................................................................................................................................................................................................1511.001.00----------------------------1.00-----------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTCGGC..........................................................................231.000.001.00---------------------------------------------
.................................................................................................GTTGTTAGAAAGGCATGTTAAC...................................................................................................................................2211.001.00---------------------1.00------------------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTCGG...........................................................................221.000.001.00---------------------------------------------
..............................................................................................CTGGTTGTTAGAAAGGCATGTTA.....................................................................................................................................2311.001.00--------------------------------------1.00-------
......................................................................................................................................................TCATGCCTTTTTTTTTTTTTTTGCC...........................................................................251.000.00-1.00--------------------------------------------
.....................TCCGGAGTCTGAAAGATGCA.................................................................................................................................................................................................................2011.001.00---1.00------------------------------------------
............................................................................................................GGCATGTTAACTAGTT..............................................................................................................................1631.001.00------0.33------------------------------------0.33-0.33
.................ACTCTCCGGAGTCTGAAAGATGCA.................................................................................................................................................................................................................2411.001.00---1.00------------------------------------------
...........................................................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCCGCGTCCGTG311.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTCGTG.............................................................................211.000.00-----------------------------------------1.00----
...............................................................................................................................................................................................................TACAGTGGCGTGATCTCAGCTCAGCGC................271.000.00-1.00--------------------------------------------
..............................................................................................................................................................................AGACTGAGTCTCACTATT..........................................................181.000.00------------------------------------1.00---------
....................................................................................................................................................................................................................................CACTGCAACCTCCGCGTCCCAGATAA261.000.00----------------------------------------1.00-----
..............................................................................................CTGGTTGTTAGAAAGGCA..........................................................................................................................................1811.001.00------1.00---------------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCGCTG...231.000.00-1.00--------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTCG............................................................................221.000.001.00---------------------------------------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTCGGG..........................................................................231.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTGGTG..........................................................................241.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTAGGG...........................................................................231.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTGAT................................................................................181.000.001.00---------------------------------------------
.........................................................................................................................................................TGCCTTTTTTTTTTTTTTTTGAGCCGG......................................................................271.000.001.00---------------------------------------------
.......................CGGAGTCTGAAAGATGCACTTTTCA..........................................................................................................................................................................................................2511.001.00---1.00------------------------------------------
...................TCTCCGGAGTCTGAAAGATGC..................................................................................................................................................................................................................2111.001.00--------1.00-------------------------------------
.......................................................................................................................................................................................................................CGTGATCTCAGCTCAGAC.................181.000.00---------------------------------1.00------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTTCCCC..........................................................................241.000.001.00---------------------------------------------
........................................................................................................................................................ATGCCTTTTTTTTTTTTTTAGTG...........................................................................231.000.00-1.00--------------------------------------------
...............................................................................................................ATGTTAACTAGTTGTTGGG........................................................................................................................191.000.00-----------------1.00----------------------------
......................................................................................................................................................TCATGCCTTTTTTTTTTTTTTCC.............................................................................231.000.001.00---------------------------------------------
.......................................................................................................................................................CATGCCTTTTTTTTTTTTTTTTTGC..........................................................................251.000.001.00---------------------------------------------
............................................................................................................GGCATGTTAACTAGTTACGC..........................................................................................................................2030.671.00------------------------------------------0.33-0.33-
......................................................................................................................................................TCATGCCTTTTTTTTTTTTTTTTGAG..........................................................................2620.500.500.50---------------------------------------------
............................................................................................................GGCATGTTAACTAGTTACG...........................................................................................................................1930.331.00-------------0.33--------------------------------

Antisense strand
ATTTACAGATTGGAACAACTCTCCGGAGTCTGAAAGATGCACTTTTCAAGGTTTGCAAGTTTCATTGTTAGTTTATTGTAATTGCAGGGCATCTCTGGTTGTTAGAAAGGCATGTTAACTAGTTGTTTATCTTAAATACTAAAAGATTCATCATGCCTTTTTTTTTTTTTTTTGAGACTGAGTCTCACTCTGTTGCCCAAGCTAGAGTACAGTGGCGTGATCTCAGCTCACTGCAACCTCCGCGTCCCAG
........................................................................................................((((((((((.........((...(((((.........))))).)).)))))))))).........................................................................................
........................................................................................................105........................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................................................................GCTAGAGTACAGTGGGC................................. 171.000.00---------------------------------------1.00------
............................................................................................................................................................................................................................TCTCAGCTCACTGCAACCTCCGCGTG.... 261.000.00-----------------------------1.00----------------
............................................................................................................................................................................................................................TCTCAGCTCACTGCAACCTCCGCGTCTGC. 291.000.00-1.00--------------------------------------------
...........................................TTTCAAGGTTTGCAACAG............................................................................................................................................................................................. 181.000.00-1.00--------------------------------------------
..............................................................................................................................................................................................................GTACAGTGGCGTGATCTCAGAAA..................... 231.000.00--------------------1.00-------------------------
..................................................................................................................................................................................................................................CTCACTGCAACCTCCGCGTCCG.. 221.000.001.00---------------------------------------------