ID: uc001zvf.2_intron_0_0_chr15_45695717_f.5p
GENE: (1)
chr15:45695667-45695916+


(1)
AGO3.ip
(1)
B-CELL
(3)
BRAIN
(6)
BREAST
(5)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(22)
SKIN
(2)
UTERUS

Sense strand
CGGACGCTCTAGACCCAGCGCTGCGTAGGCCCGGGAGATTTGACCGAGAGGTGAATGGGCTTGGCGGGTTTGCCCACTGTCGGTGGAACCTCGGCCGCTTCTGGCGCCATTTGGCTGCCCCGGAGGCGTTTGCCTCTTAGGTTTGAGCATCGGTGAGGTTGGAGTTGGGGCTCTTTGCAATGCAGAGAACACGTTCTCTGCCGATATATGATCTGTGAGTCAGGACCTGTATTTCCCCAGAGTCAAATTG
........................................................................(((((((...((.((((((.((((((((((((((((....))).)))..)))))))...)))....))))))..))..))))).))..(((((....)))))............................................................................
........................................................................73........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040009(GSM532894)
G727T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................TGTCGGTGGAACCTCCA............................................................................................................................................................1733.000.0012.006.005.004.00-----1.001.00------1.00----1.00--------1.00----1.00------------
.............................................................................TGTCGGTGGAACCTCCAAA..........................................................................................................................................................192.000.00---1.00-1.00-------------------------------------------
............................................................................CTGTCGGTGGAACCTCCA............................................................................................................................................................182.000.00------2.00------------------------------------------
....................................................GAATGGGCTTGGCGG.......................................................................................................................................................................................1551.801.80----------------------------------------0.40-0.200.200.200.200.200.200.20
.............................................................................TGTCGGTGGAACCTCCG............................................................................................................................................................171.000.00-----------------------------1.00-------------------
.............................................................................TGTCGGTGGAACCTCCAA...........................................................................................................................................................181.000.00-1.00-----------------------------------------------
.................................................................................................................................................................................................................GATCTGTGAGTCAGGACCTG.....................2011.001.00----------------------------------1.00--------------
.........................................................................................................................................................TGAGGTTGGAGTTGGGGCTGTT...........................................................................221.000.00-----------1.00-------------------------------------
.....................................................................................................................................................................................GCAGAGAACACGTTCTCTAGTT...............................................221.000.00--------------------------------1.00----------------
...................................................................................................................................GCCTCTTAGGTTTGAGCATCGG.................................................................................................2211.001.00----------------------------1.00--------------------
....................................................GAATGGGCTTGGCGGGATA...................................................................................................................................................................................191.000.00---------------------------1.00---------------------
.........................................................................................................................................................TGAGGTTGGAGTTGGATAT..............................................................................191.000.00-----1.00-------------------------------------------
.............................................................................TGTCGGTGGAACCTCC.............................................................................................................................................................161.000.00-----------------------------------1.00-------------
..........................................................................................................................................AGGTTTGAGCATCGGTGACTC...........................................................................................211.000.00------------1.00------------------------------------
..................................................GTGAATGGGCTTGGCGGAAT....................................................................................................................................................................................201.000.00-------------1.00-----------------------------------
..........................................ACCGAGAGGTGAATGGA...............................................................................................................................................................................................171.000.00----------------1.00--------------------------------
..................................................GTGAATGGGCTTGGCGGAA.....................................................................................................................................................................................191.000.00--------1.00----------------------------------------
..................................................................................................................................................GCATCGGTGAGGTTGATCT.....................................................................................191.000.00---------------------------------------1.00---------
...............................................................................................CGCTTCTGGCGCCATGCC.........................................................................................................................................181.000.00--------------------1.00----------------------------
...................................................TGAATGGGCTTGGCGGA......................................................................................................................................................................................171.000.00--------------1.00----------------------------------
.....................................................................................GAACCTCGGCCGCTTCTGGC.................................................................................................................................................2011.001.00-------------------------------------1.00-----------
.........................................................................................................................................................TGAGGTTGGAGTTGGGGCTG.............................................................................201.000.00---------------1.00---------------------------------
...............................................................................TCGGTGGAACCTCGGT...........................................................................................................................................................161.000.00-------------------------1.00-----------------------
..............................................................................................CCGCTTCTGGCGCCAAGC..........................................................................................................................................181.000.00--------------------------1.00----------------------
...............................................................................................CGCTTCTGGCGCCATGCGC........................................................................................................................................191.000.00------------------------1.00------------------------
................................GGGAGATTTGACCGAGAG........................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------
......................................................................TGCCCACTGTCGGTGGAACCTCGGC...........................................................................................................................................................2511.001.00----1.00--------------------------------------------
....................................................GAATGGGCTTGGCGGAATA...................................................................................................................................................................................1950.401.80-----------------------------------------0.40-------
....................................................GAATGGGCTTGGCGGAC.....................................................................................................................................................................................1750.201.80--------0.20----------------------------------------

Antisense strand
CGGACGCTCTAGACCCAGCGCTGCGTAGGCCCGGGAGATTTGACCGAGAGGTGAATGGGCTTGGCGGGTTTGCCCACTGTCGGTGGAACCTCGGCCGCTTCTGGCGCCATTTGGCTGCCCCGGAGGCGTTTGCCTCTTAGGTTTGAGCATCGGTGAGGTTGGAGTTGGGGCTCTTTGCAATGCAGAGAACACGTTCTCTGCCGATATATGATCTGTGAGTCAGGACCTGTATTTCCCCAGAGTCAAATTG
........................................................................(((((((...((.((((((.((((((((((((((((....))).)))..)))))))...)))....))))))..))..))))).))..(((((....)))))............................................................................
........................................................................73........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040041(GSM532926)
G612T. (cervix)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040009(GSM532894)
G727T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................ACGTGTTCTCTGCATTGC........................................................ 1813.003.00-2.00----------------------------1.00------------------
..............................................................................................................................................................................................TCATATATCGGCAGAGAACGT....................................... 2112.002.00-------2.00-----------------------------------------
.....................................................................................................................................CTCTTAGGTTTGAGCATCGGTGAGTCAA......................................................................................... 281.000.00---------------------1.00---------------------------
..................................................................................................................................................................AGTTGGGGCTCTTTGCAGGAA................................................................... 211.000.00---------------------------------1.00---------------
.................................................................................................................GCTGCCCCGGAGGCGGG........................................................................................................................ 171.000.00--------------------------------------1.00----------
...............................................................................................................................................................................................GATCATATATCGGCAGAGAACG..................................... 2211.001.00-----------------------1.00-------------------------
.......................................................................GCCCACTGTCGGTGGGCA................................................................................................................................................................. 181.000.00------------------1.00------------------------------
......................GCGTAGGCCCGGGAGCTG.................................................................................................................................................................................................................. 180.500.00----0.50--------------------------------------------
......................CTCCCGGGCCTACGC..................................................................................................................................................................................................................... 1520.500.50----0.50--------------------------------------------