ID: uc001ztv.2_intron_1_0_chr15_44829626_f.5p
GENE: (2)
chr15:44829576-44829825+


(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(11)
B-CELL
(9)
BRAIN
(7)
BREAST
(31)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(5)
LIVER
(2)
OTHER
(2)
RRP40.ip
(22)
SKIN
(1)
XRN.ip

Sense strand
CTGCCGGCGGGGACCGCTGGGAAGGCGAGGACGAGGACGAGGACGTCAAGGTGGGTGCGGGCTAGGGCGCCGGGCAGCGCGGAAGCGGGCTGGCGCTGTTGCCGGCCGACTCTGGGCCCCGGGTCGCTGCCGGGGCCTGCGGGCCGTGGGTCCAGGCGCGAGCATAGGGCCTGGCGGTGCTCTCTTCCCCTCCGCTTGCCGGCCATGTGTGGGCCGAAGACTGGCAGCGTGGCCTCCCGGACTCCCTCGC
.................................................................((((((.(((..(((....))).))))))))).........................................................................................................................................................
..................................................51...............................................100....................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR040040(GSM532925)
G612N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR038853(GSM458536)
MELB. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
..............................................................................GCGGAAGCGGGCTGGGCC..........................................................................................................................................................18223.000.50-1.00--3.001.00---1.00--1.001.001.00---------1.00--2.00-----1.00-1.00-----1.00----1.00--------------------1.001.001.00---1.00-1.00-----1.00----1.00--------------
..............................................................................GCGGAAGCGGGCTGGGCCC.........................................................................................................................................................19213.000.50-----2.00------1.001.001.00-----------2.00------1.001.001.00-------1.00-----1.00-1.00-------------------------------------------------
...........................AGGACGAGGACGAGGACGCGA..........................................................................................................................................................................................................214.000.00---4.00-------------------------------------------------------------------------------------------------
...............................................................................CGGAAGCGGGCTGGCCCC.........................................................................................................................................................1823.000.50----------------1.00---------------------------1.00----------------------------------1.00---------------------
...................................................TGGGTGCGGGCTAGGGCA.....................................................................................................................................................................................183.000.00--------3.00--------------------------------------------------------------------------------------------
...........................................................................................GGCGCTGTTGCCGGCCGACTCTGGG......................................................................................................................................2512.002.00----------2.00------------------------------------------------------------------------------------------
....................................................................GCCGGGCAGCGCGGAAGCG...................................................................................................................................................................1912.002.00------2.00----------------------------------------------------------------------------------------------
.............................................................................CGCGGAAGCGGGCTGGCGCTGT.......................................................................................................................................................2212.002.00---------------------2.00-------------------------------------------------------------------------------
...............GCTGGGAAGGCGAGGACGAGGACGAG.................................................................................................................................................................................................................2612.002.00--------------------1.00----------------------------------------------------------------1.00---------------
..............................................................................GCGGAAGCGGGCTGGGTC..........................................................................................................................................................1822.000.50----1.00-----------------------------1.00------------------------------------------------------------------
.........GGGACCGCTGGGAAGGCC...............................................................................................................................................................................................................................182.000.00-------------------------1.00----------------------------------1.00----------------------------------------
..............................................................................GCGGAAGCGGGCTGGGC...........................................................................................................................................................1722.000.50--------------------------------------------------------1.00---------------------1.00----------------------
...............GCTGGGAAGGCGAGGACGAGGA.....................................................................................................................................................................................................................2212.002.00-----------1.00--------------------------------------1.00--------------------------------------------------
..................GGGAAGGCGAGGACGAGGA.....................................................................................................................................................................................................................1912.002.00-----------2.00-----------------------------------------------------------------------------------------
..........................GAGGACGAGGACGAGGACGTC...........................................................................................................................................................................................................2112.002.00------------------------1.00----------------------------1.00-----------------------------------------------
................................GAGGACGAGGACGTCAAGGTGGG...................................................................................................................................................................................................2312.002.00-----------------------------2.00-----------------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGGGC..........................................................................................................................................................1822.000.50----------------1.00----------------------------------------------1.00-------------------------------------
.........GGGACCGCTGGGAAGGCGAGGAC..........................................................................................................................................................................................................................2312.002.00-------2.00---------------------------------------------------------------------------------------------
...........................AGGACGAGGACGAGGACGTCAAGCTA.....................................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------------
..........GGACCGCTGGGAAGGC................................................................................................................................................................................................................................1611.001.00---------------------------------------------1.00-------------------------------------------------------
....CGGCGGGGACCGCTGGGAAGGCGAGGACG.........................................................................................................................................................................................................................2911.001.00----------------------------------------1.00------------------------------------------------------------
.........GGGACCGCTGGGAAGGCGAGGACGAGGACGA..................................................................................................................................................................................................................3111.001.00---------------1.00-------------------------------------------------------------------------------------
..............CGCTGGGAAGGCGAGGACGAG.......................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00----------------
.TGCCGGCGGGGACCGTTGT......................................................................................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGACTGGCAGCGTGGCCTCCCGGACTCCCCG..311.000.001.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................GCGAGCATAGGGCCTGGC...........................................................................1811.001.00--------------------------------------------------------------1.00--------------------------------------
....................................................................GCCGGGCAGCGCGGAAGC....................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------1.00------------------
..........................GAGGACGAGGACGAGGAGA.............................................................................................................................................................................................................191.000.00---------1.00-------------------------------------------------------------------------------------------
......................AGGCGAGGACGAGGACGAGGACGTCAAGGACAA...................................................................................................................................................................................................331.000.001.00----------------------------------------------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGGCA..........................................................................................................................................................1821.000.50----------------------1.00------------------------------------------------------------------------------
.........GGGACCGCTGGGAAGGCT...............................................................................................................................................................................................................................181.000.00-----------------1.00-----------------------------------------------------------------------------------
.............................GACGAGGACGAGGACGTCAAG........................................................................................................................................................................................................2111.001.00-----------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................................................................AGGGCCTGGCGGTGCGG....................................................................171.000.00-------------------------------------------------------------1.00---------------------------------------
....................................................................................................GCCGGCCGACTCTGGGCCCCGGGT..............................................................................................................................2411.001.00------------------1.00----------------------------------------------------------------------------------
.................................AGGACGAGGACGTCAAGGTGGG...................................................................................................................................................................................................2211.001.00------------------------------------------------1.00----------------------------------------------------
..........................................................................................................................................................GGCGCGAGCATAGGG.................................................................................1511.001.00-----------------------------------------------------------------------------1.00-----------------------
..............................................................................GCGGAAGCGGGCTGGGGCT.........................................................................................................................................................1921.000.50-----1.00-----------------------------------------------------------------------------------------------
...............................................................................CGGAAGCGGGCTGGCCGC.........................................................................................................................................................1821.000.50-1.00---------------------------------------------------------------------------------------------------
.....................AAGGCGAGGACGAGGACGAGGACGCC...........................................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------------
.....GGCGGGGACCGCTGGGAAGG.................................................................................................................................................................................................................................2011.001.00--------------------1.00--------------------------------------------------------------------------------
...............................................................................CGGAAGCGGGCTGGCCC..........................................................................................................................................................1721.000.50----------------------1.00------------------------------------------------------------------------------
...............................................................................CGGAAGCGGGCTGGCGGGG........................................................................................................................................................191.000.00------------------------------------------1.00----------------------------------------------------------
....................................ACGAGGACGTCAAGGATA....................................................................................................................................................................................................181.000.00----------------------------------------------------1.00------------------------------------------------
......................AGGCGAGGACGAGGACGAGGA...............................................................................................................................................................................................................2111.001.00-----------------------1.00-----------------------------------------------------------------------------
................................GAGGACGAGGACGTCAAGGAT.....................................................................................................................................................................................................211.000.00----------------------------------------------------------------1.00------------------------------------
...............................................................................CGGAAGCGGGCTGGCCCG.........................................................................................................................................................1821.000.50-1.00---------------------------------------------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGGGCC.........................................................................................................................................................1921.000.50-------------1.00---------------------------------------------------------------------------------------
....CGGCGGGGACCGCTGGGAAGGCGAGGACGAGGA.....................................................................................................................................................................................................................3311.001.00-------------------------1.00---------------------------------------------------------------------------
.............................................................................CGCGGAAGCGGGCTGGG............................................................................................................................................................171.000.00----------------------------------------------------------------------------1.00------------------------
..........................GAGGACGAGGACGAGGACGTCAA.........................................................................................................................................................................................................2311.001.00--------------1.00--------------------------------------------------------------------------------------
...........................AGGACGAGGACGAGGACGT............................................................................................................................................................................................................1921.001.00---------------0.50------------------------------------------------------------------------0.50------------
.........................CGAGGACGAGGACGAGGTTT.............................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------1.00--------------------------
....................................................GGGTGCGGGCTAGGGCAA....................................................................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------------
....................................................................GCCGGGCAGCGCGGAAGCGGGCT...............................................................................................................................................................2311.001.00------------------------------------------------------1.00----------------------------------------------
.......................................................................GGGCAGCGCGGAAGCTAG.................................................................................................................................................................181.000.00--1.00--------------------------------------------------------------------------------------------------
...................................................................................AGCGGGCTGGCGCTGTTGCCGG.................................................................................................................................................2211.001.00---------------------------------------------------------1.00-------------------------------------------
.................................AGGACGAGGACGTCAAGG.......................................................................................................................................................................................................1811.001.00----------------------------------------------------------1.00------------------------------------------
...............................................................................CGGAAGCGGGCTGGCACC.........................................................................................................................................................1821.000.50-----------------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................................GGCAGCGTGGCCTCCTGCA.........191.000.00-------------------1.00---------------------------------------------------------------------------------
....................GAAGGCGAGGACGAGGGCGA..................................................................................................................................................................................................................201.000.00------------1.00----------------------------------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGGAA..........................................................................................................................................................1821.000.50----------------------------------------------------------------------1.00------------------------------
..................GGGAAGGCGAGGACGAGGACG...................................................................................................................................................................................................................2111.001.00-------------------------------------1.00---------------------------------------------------------------
....................................................GGGTGCGGGCTAGGGCGCCGGGCAGCG...........................................................................................................................................................................2711.001.00--------------------------------------1.00--------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGG............................................................................................................................................................1621.000.50------------------------------------1.00----------------------------------------------------------------
............ACCGCTGGGAAGGCGAGGACGAGG......................................................................................................................................................................................................................2411.001.001.00----------------------------------------------------------------------------------------------------
..................GGGAAGGCGAGGACGAGGACGAGGACGTCAAGG.......................................................................................................................................................................................................3311.001.00-----------------------------------------------------------------1.00-----------------------------------
...................................................................................................................GCCCCGGGTCGCTGCCACGG...................................................................................................................201.000.00------1.00----------------------------------------------------------------------------------------------
........................GCGAGGACGAGGACGAGGACGT............................................................................................................................................................................................................2211.001.00------------------1.00----------------------------------------------------------------------------------
.........GGGACCGCTGGGAAGGCGAGGAA..........................................................................................................................................................................................................................231.000.00-------1.00---------------------------------------------------------------------------------------------
.............................GACGAGGACGAGGACGTCAAGGATA....................................................................................................................................................................................................2511.001.00----------1.00------------------------------------------------------------------------------------------
..............................................................................GCGGAAGCGGGCTGGGCGC.........................................................................................................................................................1921.000.50---------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................GCGAGCATAGGGCCTGGCA..........................................................................1911.001.00-------------------------------------------------------1.00---------------------------------------------
.............................GACGAGGACGAGGACGTCAAGG.......................................................................................................................................................................................................2211.001.00-------------------------------1.00---------------------------------------------------------------------
.........GGGACCGCTGGGAAGGCCCG.............................................................................................................................................................................................................................201.000.00---------------------------------------------------------------------------------------1.00-------------
.......................................AGGACGTCAAGGTGGGTG.................................................................................................................................................................................................1811.001.00-------------------------------1.00---------------------------------------------------------------------
..........................GAGGACGAGGACGAGGACGTCAAGGAA.....................................................................................................................................................................................................271.000.00--------------------------------------------------------------------------------1.00--------------------
............ACCGCTGGGAAGGCGAGGA...........................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00-----------------------------
............................................................GCTAGGGCGCCGGGCAGCGCGGAAGCGG..................................................................................................................................................................2811.001.00----------------------------1.00------------------------------------------------------------------------
.....................AAGGCGAGGACGAGGG.....................................................................................................................................................................................................................161.000.00--1.00--------------------------------------------------------------------------------------------------
...............GCTGGGAAGGCGAGGACGAGGACG...................................................................................................................................................................................................................2411.001.00------------------------------1.00----------------------------------------------------------------------
.........GGGACCGCTGGGAAGGCGAGG............................................................................................................................................................................................................................2111.001.00---------------1.00-------------------------------------------------------------------------------------
..........GGACCGCTGGGAAGGCCCGG............................................................................................................................................................................................................................2011.001.00----------------------------1.00------------------------------------------------------------------------
................CTGGGAAGGCGAGGACGAGGACGAGGACGTCAAG........................................................................................................................................................................................................3411.001.00--1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................GGTCGCTGCCGGGGCCTG...............................................................................................................1820.500.50-------------------------------------------------------------------------------------------0.50---------
.......................GGCGAGGACGAGGACGAGGACG.............................................................................................................................................................................................................2220.500.50-------------------------------------0.50---------------------------------------------------------------
...........GACCGCTGGGAAGGC................................................................................................................................................................................................................................1520.500.50------------------------------------------------------------------------------------------0.50----------
..........................GAGGACGAGGACGAGGACGT............................................................................................................................................................................................................2020.500.50--------------------------------------------------------------------------------------------0.50--------
..............................................................................GCGGAAGCGGGCTGG.............................................................................................................................................................1520.500.50------------------------------------0.50----------------------------------------------------------------
...............................................................................CGGAAGCGGGCTGGC............................................................................................................................................................1520.500.50---------------------------------------------------------------------------------------------0.50-------
........................GCGAGGACGAGGACGAG.................................................................................................................................................................................................................1730.330.33----------------------------------------------------------------------------------------------0.33------
.................................................................................................................................................................................................................................AGCGTGGCCTCCCGG..........1540.250.25-----------------------------------------------------------------------------------------------0.25-----
..........................GAGGACGAGGACGAGGACG.............................................................................................................................................................................................................1980.250.25-----------------0.12------------------------------------------------------------------------------0.12----
.....................................................................................................................................................................AGGGCCTGGCGGTGCTTCAT.................................................................2050.200.20-------------------------------------------------------------------------------------------------0.20---
.....................................................................................................................................................................AGGGCCTGGCGGTGCT.....................................................................1650.200.200.20----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................AGGGCCTGGCGGTGCTTTGT.................................................................2050.200.20----------------0.20------------------------------------------------------------------------------------

Antisense strand
CTGCCGGCGGGGACCGCTGGGAAGGCGAGGACGAGGACGAGGACGTCAAGGTGGGTGCGGGCTAGGGCGCCGGGCAGCGCGGAAGCGGGCTGGCGCTGTTGCCGGCCGACTCTGGGCCCCGGGTCGCTGCCGGGGCCTGCGGGCCGTGGGTCCAGGCGCGAGCATAGGGCCTGGCGGTGCTCTCTTCCCCTCCGCTTGCCGGCCATGTGTGGGCCGAAGACTGGCAGCGTGGCCTCCCGGACTCCCTCGC
.................................................................((((((.(((..(((....))).))))))))).........................................................................................................................................................
..................................................51...............................................100....................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR040040(GSM532925)
G612N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR038853(GSM458536)
MELB. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................AGGGGAAGAGAGCACCGC........................................................... 1812.002.00--------------------------------2.00--------------------------------------------------------------------
..........................................................................................................................................................................GGGGAAGAGAGCACCGCCAG............................................................ 2011.001.00-------------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................GAAGAGAGCACCGCCAGG............................................................... 1811.001.00-----------------------------------------------------------1.00-----------------------------------------
...........................................................................................................GACTCTGGGCCCCGGGTTG............................................................................................................................ 191.000.00------------------------------1.00----------------------------------------------------------------------
...................................GACGAGGACGTCAAGGTTTA................................................................................................................................................................................................... 201.000.00-----------------------------------------------1.00-----------------------------------------------------
........................................................GCGGGCTAGGGCGCCGGGG............................................................................................................................................................................... 191.000.00------------------------------------------------------------------------1.00----------------------------
....................................................................GCCGGGCAGCGCGGATGGC................................................................................................................................................................... 191.000.00------------------------------------------------------------------1.00----------------------------------
.......................................................................................................................CGGGTCGCTGCCGGGCGGG................................................................................................................ 191.000.00---------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................CGGGTCGCTGCCGGGGCGGG............................................................................................................... 201.000.00-----------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................AAGCGGAGGGGAAGAGAG..................................................... 1820.500.50-----------------------------------------------------------------------------------------0.50-----------
.........................CTCGTCCTCGTCCTCG................................................................................................................................................................................................................. 1690.440.44----------------------------------------------------------------------------------------0.11-------0.11--0.110.11
.........................TCCTCGTCCTCGTCCTCG............................................................................................................................................................................................................... 1880.250.25--------------------------------------0.12-----------------------------------------------------------0.12--
.........................CCTCGTCCTCGTCCTCG................................................................................................................................................................................................................ 1780.120.12---------------------------------------0.12-------------------------------------------------------------