ID: uc001zrj.1_intron_1_0_chr15_43656581_r.5p
GENE: ZSCAN29(2)
chr15:43658108-43658357-


(2)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(9)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(11)
SKIN

Sense strand
CCCCCAGGACCCCAACTCAGCTGCACCTGTTGTGTTCAGAAGCCCAGGTGGTAAGAAGCTTTTCTTCTTGGAGTTTTGGAATTAGACTTGGGGAACAAAGAGACTGGATGTGGAGTCAGAAGGCTTAATGTCACATGCCAGCTTTGCCACTTAGGGAACAAAGAAGTGCTTCTCCATTCTTTGTGTGTATTTCATTCTCTTTTATGGGAAAATCAGTGAGATAATTGGGAATACATTTAGATTTTTAGAA
................................................................(((((.((((((.......)))))).))))).................(((((....)))))............................................................................................................................
...............................................................64..............................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787TAX577738(Rovira)
total RNA. (breast)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
......................................................................................................ACTGGATGTGGAGTCAGAAGGC..............................................................................................................................22119.0019.007.00-2.001.00--1.00--1.00----1.00---1.00--1.001.00--1.00-----1.001.00---------
......................................................................................................ACTGGATGTGGAGTCAGAAGG...............................................................................................................................2115.005.001.001.00--1.00-------1.00------1.00----------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGA..............................................................................................................................2215.005.00-1.001.00---------------------1.00-----------1.001.00----
......................................................................................................ACTGGATGTGGAGTCAGAAGGCA.............................................................................................................................2313.0019.001.001.00------------------------------------1.00---
............................................................................................GAACAAAGAGACTGGGAA............................................................................................................................................182.000.00-----2.00------------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGGA.............................................................................................................................2312.005.00-1.00--1.00-------------------------------------
....................................................................TGGAGTTTTGGAATTAGGAGT.................................................................................................................................................................211.000.00-----------1.00------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGCAA............................................................................................................................2411.0019.00----------------1.00-------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGCAG............................................................................................................................2411.0019.00--1.00---------------------------------------
.......................................................................................................CTGGATGTGGAGTCAGAAGGCT.............................................................................................................................2211.001.00---------------------------1.00--------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGT..............................................................................................................................2211.005.00---------------1.00--------------------------
.................................................................................................AAGAGACTGGATGTGGAGTCAGAAGGGT.............................................................................................................................281.000.00------------------------------1.00-----------
......................................................................................................ACTGGATGTGGAGTCAGAAGGCT.............................................................................................................................2311.001.00--------1.00---------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGGT.............................................................................................................................2311.005.00----------------------------------1.00-------
..................................................................................................................................TCACATGCCAGCTTTCAT......................................................................................................181.000.00-----------------1.00------------------------
....................................................................TGGAGTTTTGGAATTAGGAGA.................................................................................................................................................................211.000.00-----------------------1.00------------------
......................................................................................................ACTGGATGTGGAGTCAGATGGC..............................................................................................................................221.000.00-----------------------------1.00------------
......................................................................................................ACTGGATGTGGAGTCATAAG................................................................................................................................201.000.00-1.00----------------------------------------
..........CCCAACTCAGCTGCACAG..............................................................................................................................................................................................................................181.000.00-------1.00----------------------------------
..............................................................................................................TGGAGTCAGAAGGCTAT...........................................................................................................................171.000.00----------1.00-------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAGGGA..............................................................................................................................221.000.00--------------------1.00---------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGCT..............................................................................................................................221.000.001.00-----------------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAGAC..............................................................................................................................221.000.00---------------------------------1.00--------
..............................................................................................ACAAAGAGACTGGATGTGGA........................................................................................................................................2011.001.00-------------1.00----------------------------
...CCAGGACCCCAACTCAGCTGC..................................................................................................................................................................................................................................2111.001.00---1.00--------------------------------------
......................................................................................................ACTGGATGTGGAGTCAGAAACA..............................................................................................................................221.000.00------1.00-----------------------------------
........................................................................................TGGGGAACAAAGAGACTGGATGTGGAGTCAG...................................................................................................................................3111.001.00--------------------------1.00---------------
......................................................................................................ACTGGATGTGGAGTCAGAAGGCAT............................................................................................................................2411.0019.00-----------------------------------1.00------
......................................................................................................ACTGGATGTGGAGTCAGAGG................................................................................................................................201.000.001.00-----------------------------------------
...........................TGTTGTGTTCAGAAGC...............................................................................................................................................................................................................1640.250.25---------------------------------------0.25--
......................................................................................................ACTGGATGTGGAGTCAGGAG................................................................................................................................2050.200.20-0.20----------------------------------------
......................................................................................................ACTGGATGTGGAGTCAG...................................................................................................................................1750.200.20-------0.20----------------------------------

Antisense strand
CCCCCAGGACCCCAACTCAGCTGCACCTGTTGTGTTCAGAAGCCCAGGTGGTAAGAAGCTTTTCTTCTTGGAGTTTTGGAATTAGACTTGGGGAACAAAGAGACTGGATGTGGAGTCAGAAGGCTTAATGTCACATGCCAGCTTTGCCACTTAGGGAACAAAGAAGTGCTTCTCCATTCTTTGTGTGTATTTCATTCTCTTTTATGGGAAAATCAGTGAGATAATTGGGAATACATTTAGATTTTTAGAA
................................................................(((((.((((((.......)))))).))))).................(((((....)))))............................................................................................................................
...............................................................64..............................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787TAX577738(Rovira)
total RNA. (breast)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189782SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
.................................GTTCAGAAGCCCAGGTCTG...................................................................................................................................................................................................... 191.000.00----------------------------1.00-------------
.......................................................................................................CTGGATGTGGAGTCAGAGCTC.............................................................................................................................. 211.000.001.00-----------------------------------------
............................GCTTCTGAACACAAC............................................................................................................................................................................................................... 1580.120.12----------------------------------------0.12-
..........................................................................................................CTTCTGACTCCACATC................................................................................................................................ 1690.110.11-----------------------------------------0.11