ID: uc001znn.1_intron_3_0_chr15_41600823_f
GENE: (4)
chr15:41600773-41600967+


(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGAAACTTCACTTCTACACAGAGGCTTTCTTTCCCAGAAACCCAGACCAGGTCAGTTACCTGCTTTATGTGCGTGTATCCCTATGTTCCTTTACTTCAAAACCCTTACTAGCGTCATAATTTTACATATCTTTTTTTTTTTTTAGATGGAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGG

....................................................................................85..........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................TACATATCTTTTTTTTTTTTTTTG.................................................2489.000.0047.0029.005.008.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTG......................................................1926.000.0010.009.002.005.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTGG..................................................234.000.001.002.001.00---------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTCTTG................................................254.000.00-1.002.001.00--------------
...................................................................................................................................TTTTTTTTTTTTAGATGGAGTGG.........................................233.000.00------3.00-----------
..........................................................................................................................TACATATCTTTTTTTTTTTTGG...................................................223.000.002.001.00----------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTA..................................................233.000.00-1.002.00---------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTTGG................................................253.000.00-2.001.00---------------
............................................................................................................................CATATCTTTTTTTTTTTTTAATG................................................233.000.00-2.00-1.00--------------
...........................................................................................................................ACATATCTTTTTTTTTTCTTG...................................................212.000.00--1.001.00--------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTTCG.................................................232.000.00--1.001.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTGG.................................................242.000.002.00-----------------
..........................................................................................................................TACATATCTTTTTTTTTTTGG....................................................212.000.00-1.00-1.00--------------
............................................................................................................................CATATCTTTTTTTTTTTTCAAG.................................................222.000.00--2.00---------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTTTGG................................................242.000.001.00--1.00--------------
.............................................................................................................................ATATCTTTTTTTTTTTTCCG..................................................202.000.001.00--1.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTTTCTTG.................................................241.000.00--1.00---------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTTATT................................................241.000.00-1.00----------------
.........................................................................................TTTACTTCAAAACCCTTGAGG.....................................................................................211.000.00-------1.00----------
.........................................................................................................................TTACATATCTTTTTTTTTTTAAT...................................................231.000.001.00-----------------
.................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGGCACGAGTTC..321.000.00-----1.00------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTAG..................................................2311.001.00--1.00---------------
.................................................................................................................TCATAATTTTACATATCTTTTTTTTTTAG.....................................................291.000.001.00-----------------
.................................................................................................................TCATAATTTTACATATCTTTTTTTTTTTTCAG..................................................321.000.00--1.00---------------
.................................................................................................................TCATAATTTTACATATCTTTTTTTTTAT......................................................281.000.001.00-----------------
...........................................................................................................................ACATATCTTTTTTTTTTCTC....................................................201.000.001.00-----------------
...........................................................................................................................ACATATCTTTTTTTTTCG......................................................181.000.00--1.00---------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTTTTA................................................241.000.00-1.00----------------
............................................................................................................................CATATCTTTTTTTTTTTATTT..................................................211.000.00--1.00---------------
...........................................................................................................................ACATATCTTTTTTTTTTTCTTG..................................................221.000.00--1.00---------------
.................................................................................................................TCATAATTTTACATATCTTTTTTTTTTTTAG...................................................311.000.00-1.00----------------
.......................................................................................................................................................TTTCACTCTGTCGCCCAGGGAGC.....................231.000.00----1.00-------------
..............................................................................................................................TATCTTTTTTTTTTTTTATCTA...............................................221.000.00-1.00----------------
.............................................................................................................................ATATCTTTTTTTTTTTTTACATG...............................................231.000.001.00-----------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTTCG................................................251.000.001.00-----------------
........................................................TACCTGCTTTATGTGAATA........................................................................................................................191.000.00-------------1.00----
..........................................................................................................................TACATATCTTTTTTTTGG.......................................................181.000.00-1.00----------------
.............................................................................................................................ATATCTTTTTTTTTTTTCTCT.................................................211.000.00-----------------1.00
.............................................................................................................................ATATCTTTTTTTTTTTTTATCT................................................221.000.00-----1.00------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTCTTG................................................241.000.00--1.00---------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTGTTG................................................251.000.00-1.00----------------
.................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGGCACGCCT....301.000.00----1.00-------------
...............................................................................................................................ATCTTTTTTTTTTTTTAGAAGA..............................................221.000.00-----1.00------------
..........................................................................................................................TACATATCTTTTTTTTCAAG.....................................................201.000.001.00-----------------
...........................................................................................................................ACATATCTTTTTTTTTTTAG....................................................201.000.00--1.00---------------
.............................................................................................................................ATATCTTTTTTTTTTTTCCCG.................................................211.000.00--1.00---------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTTTA................................................251.000.00-1.00----------------
...........................................................................................................................ACATATCTTTTTTTTTTTCG....................................................201.000.001.00-----------------
...............................................................................................................................ATCTTTTTTTTTTTTTACGAG...............................................211.000.00----1.00-------------
...............................................................................................................................ATCTTTTTTTTTTTTTAGAAGAG.............................................231.000.00-----1.00------------
............................................................................................................................CATATCTTTTTTTTTTTTTAAAG................................................231.000.00--1.00---------------
..........................................................................................................................TACATATCTTTTTTTTTGG......................................................191.000.00-1.00----------------
..........................................................................................................................TACATATCTTTTTTTTTTGG.....................................................201.000.001.00-----------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTTCTG................................................241.000.00---1.00--------------
.........................................................................................................................TTACATATCTTTTTTTTTG.......................................................191.000.001.00-----------------
............................................................................................................................CATATCTTTTTTTTTTTTTATTG................................................231.000.00---1.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTCTT................................................251.000.00---1.00--------------
..........................................................................................................................TACATATCTTTTTTTTTTTATG...................................................221.000.00--1.00---------------
..................................................................................................................CATAATTTTACATATCTTTTTTTTTTTTTAG..................................................3111.001.00--1.00---------------
.........................................................................................................................TTACATATCTTTTTTTTTTTG.....................................................211.000.001.00-----------------
........................................................................................................................TTTACATATCTTTTTTTTTTTAATG..................................................251.000.001.00-----------------
..............................................................................................................................TATCTTTTTTTTTTTTTAGCAG...............................................221.000.00----1.00-------------
...........................................................................................................................ACATATCTTTTTTTTTTCTCG...................................................211.000.00---1.00--------------
..................................................................................................................CATAATTTTACATATCTTTTTTTTTAG......................................................271.000.001.00-----------------
..........................................................................................................................TACATATCTTTTTTTTTTTTCA...................................................221.000.001.00-----------------
............................................................................................................................CATATCTTTTTTTTTTTTTATGTG...............................................241.000.001.00-----------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTTCTA................................................251.000.00---1.00--------------
.......................................................................................................................................................................AGGCTGGAGTGCAGTGGCACGAGCCA..261.000.00----1.00-------------
.................................................................................................................TCATAATTTTACATATCTTTTTTTTTTTA.....................................................291.000.00-1.00----------------
.........................................................................................................................................................TCACTCTGTCGCCCAGGCTGGTCCC.................251.000.00----1.00-------------
................................CCCAGAAACCCAGACCAG.................................................................................................................................................1811.001.00-----------1.00------
...................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00--------1.00---------
.........................................................................................................................TTACATATCTTTTTTTTTTTTTTTG.................................................251.000.00--1.00---------------
..........................................................................................................................TACATATCTTTTTTTTTTTTTA...................................................2221.001.00---1.00--------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTAG..................................................2220.500.50---0.50--------------
...........................................................................................................................ACATATCTTTTTTTTTTTTTA...................................................2180.500.50-0.38-0.12--------------

Antisense strand
TGAAACTTCACTTCTACACAGAGGCTTTCTTTCCCAGAAACCCAGACCAGGTCAGTTACCTGCTTTATGTGCGTGTATCCCTATGTTCCTTTACTTCAAAACCCTTACTAGCGTCATAATTTTACATATCTTTTTTTTTTTTTAGATGGAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGG

....................................................................................85..........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................AGGAACATAGGGATACACGCA......................................................................................................... 2111.001.00----------------1.00-
....................................................................................................ATGTAAAATTATGACGCTAGTAAGGGT.................................................................... 2711.001.00---------------1.00--
..........................................................................................................................TACATATCTTTTTTTTTTGATA................................................... 221.000.00---------1.00--------
........................................................................................................................................................TTCACTCTGTCGCCCAGGCTGGAGGCC................ 271.000.00-----1.00------------
.......................................................................................................................................................TTTCACTCTGTCGCCCAAGA........................ 201.000.00------1.00-----------
...................................................................................................................................................GGAGTTTCACTCTGTCGCCTCTC......................... 231.000.00-----1.00------------
...................................................................................................................................................GGAGTTTCACTCTGTTGAA............................. 191.000.00-------1.00----------
........ACTGACCTGGTCTGGGTTTCTGGGAAAGAAAGCCTCTGTGTAGAAGTG........................................................................................................................................... 4811.001.00----------1.00-------
..................................................................AAAGGAACATAGGGATACACGCACAT....................................................................................................... 2611.001.00--------------1.00---
........................................................................................................................................................TTCACTCTGTCGCCCAGGCTGGAGTGGCC.............. 291.000.00----1.00-------------
.............................................................................................................AAAAAGATATGTAAAATTATGACGCT............................................................ 2611.001.00------------1.00-----
........................................................................................................................................................................GGCTGGAGTGCAGTGGCACGATCTGAA 271.000.00----1.00-------------