ID: uc001zls.3_intron_9_0_chr15_40708382_f
GENE: IVD(10)
chr15:40708332-40708538+


(2)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(5)
OTHER 		(1)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGTCTACAATGTCGCCAAGGCCTGCGATGAGGGCCATTGCACTGCTAAGGTGAGGGCCAGCCTCAGTCGGGGAGAGGCGGGGGCAGTGGACCAGCTGCTGAGACTTGCTGTCTGCGTGCCTCGCAGGGCCCTGCTGACCCCAGCTTCCTCCCGTAGGACTGTGCAGGTGTGATTCTTTACTCAGCTGAGTGTGCCACACAGGTAGC
..................................................(((((.(((..((((....))))...)))...((((((......))))))....)))))..................................................................................................
..................................................51.............................................................114...........................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783GSM532871(GSM532871)
G652N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR029131(GSM416760)
MCF7. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..................................................GTGAGGGCCAGCCTCAGTCGG........................................................................................................................................21116.0016.001.0014.00--------------------1.00-----------------
..................................................GTGAGGGCCAGCCTCAGTCGGGG......................................................................................................................................23113.0013.003.008.00----2.00---------------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGG.......................................................................................................................................22112.0012.009.00-------1.00-1.00------1.00----------------------
..................................................GTGAGGGCCAGCCTCAG............................................................................................................................................1746.006.00--5.75-----------------------------------0.25-
..................................................GTGAGGGCCAGCCTCAGTCGGGGA.....................................................................................................................................2415.005.003.002.00--------------------------------------
...........................................................................................................................................................AGGACTGTGCAGGTGTGATT................................2015.005.00---2.00---2.00-------------------------1.00------
..................................................GTGAGGGCCAGCCTCAGTCG.........................................................................................................................................2014.004.00--2.00-------------1.00--------1.00--------------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGA...................................................................................................................................2613.003.00------1.00-----------------1.00---------1.00-----
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAGG.................................................................................................................................2812.002.002.00---------------------------------------
..................................................................................................................................................TCCTCCCGTAGGACTGTGCAGGTGT....................................2512.002.00-----------2.00----------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAGGCG...............................................................................................................................3012.002.00--2.00-------------------------------------
...................................................................TCGGGGAGAGGCGGGGGCAG........................................................................................................................2012.002.002.00---------------------------------------
...........................................................................................................................................................AGGACTGTGCAGGTGTGATA................................2012.001.00---------1.00---1.00--------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAG..................................................................................................................................2711.001.001.00---------------------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAGGCGGGGGGA.........................................................................................................................3611.001.001.00---------------------------------------
....................................................................CGGGGAGAGGCGGGGGGGA........................................................................................................................191.000.00------------------1.00---------------------
............................................................................................CAGCTGCTGAGACTTGCT.................................................................................................1811.001.00---1.00------------------------------------
........................................................................................................................................................CGTAGGACTGTGCAGGTGT....................................1911.001.00------------1.00---------------------------
.................................GCCATTGCACTGCTAAGG............................................................................................................................................................1811.001.00---------1.00------------------------------
...........................................................................AGGCGGGGGCAGTGGCTCA.................................................................................................................191.000.00----1.00-----------------------------------
...........................................................................................................................................................AGGACTGTGCAGGTGTGAT.................................1911.001.00-----1.00----------------------------------
................................................................................................................................................................TGTGCAGGTGTGATTCTT.............................1811.001.00-----1.00----------------------------------
......................................................................................GTGGACCAGCTGCTGAGACTTGC..................................................................................................2311.001.001.00---------------------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGAGAA....................................................................................................................................2511.0016.00--------1.00-------------------------------
......................................................................GGGAGAGGCGGGGGCAT........................................................................................................................171.000.00------------------------------1.00---------
...........................................................................................................................................................AGGACTGTGCAGGTGTGATTCTTT............................2411.001.00---1.00------------------------------------
...........................................................................................................................................................AGGACTGTGCAGGTGGTT..................................181.000.00-----1.00----------------------------------
.........ATGTCGCCAAGGCCTGCGATGAGG..............................................................................................................................................................................2411.001.00---1.00------------------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGA.......................................................................................................................................2211.0016.00--------------------------------1.00-------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAGGCGGGGG...........................................................................................................................3411.001.00-------------------1.00--------------------
.............................................................................................................................AGGGCCCTGCTGACCCCAGCTTCCTCCGTA....................................................301.000.00----------------------------1.00-----------
.....................................................................................................................TGCCTCGCAGGGCCCTGCTGGAGA..................................................................241.000.00----1.00-----------------------------------
.....................CCTGCGATGAGGGCCATTGCACTGCT................................................................................................................................................................2611.001.00---------------------------1.00------------
.....................................................................................................................................................TCCCGTAGGACTGTGCAGGTGT....................................2211.001.00---1.00------------------------------------
..................................................GTGAGGGCCAGCCTCAGTCGGGTC.....................................................................................................................................2411.0012.00---------------------1.00------------------
..........................................................................................................................CGCAGGGCCCTGCTGACCCCAGT..............................................................231.000.00--------------1.00-------------------------
.......................................................................................................................................TGACCCCAGCTTCCTCCCGTAGA.................................................231.000.00-----------------------------1.00----------
..................................................GTGAGGGCCAGCCTCAGTCGGAT......................................................................................................................................2311.0016.00--------------------------1.00-------------
..................................................GTGAGGGCCAGCCTCAGTCGGGGAGAGGCGGGG............................................................................................................................3311.001.00--1.00-------------------------------------
..................................................GTGAGGGCCAGCCTCAGTCAG........................................................................................................................................211.000.001.00---------------------------------------
..............GCCAAGGCCTGCGATG.................................................................................................................................................................................1630.330.33------------------------------------0.33---
...................................................................TCGGGGAGAGGCGGGG............................................................................................................................1630.330.33-------------------------------------0.33--
..................................................GTGAGGGCCAGCCTCA.............................................................................................................................................1640.250.25--0.25-------------------------------------
............................................................................................................................................................................ATTCTTTACTCAGCTGA..................1770.140.14---------------------------------------0.14

Antisense strand
ATGTCTACAATGTCGCCAAGGCCTGCGATGAGGGCCATTGCACTGCTAAGGTGAGGGCCAGCCTCAGTCGGGGAGAGGCGGGGGCAGTGGACCAGCTGCTGAGACTTGCTGTCTGCGTGCCTCGCAGGGCCCTGCTGACCCCAGCTTCCTCCCGTAGGACTGTGCAGGTGTGATTCTTTACTCAGCTGAGTGTGCCACACAGGTAGC
..................................................(((((.(((..((((....))))...)))...((((((......))))))....)))))..................................................................................................
..................................................51.............................................................114...........................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783GSM532871(GSM532871)
G652N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR029131(GSM416760)
MCF7. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................GCCCTGCTGACCCCAGCTTCTG......................................................... 221.000.00----1.00-----------------------------------
.....................................................................GGGGAGAGGCGGGGGCCC........................................................................................................................ 181.000.00-------------------------------1.00--------
............................................................................................................................................CCAGCTTCCTCCCGTAGAG................................................ 191.000.00-----------------------1.00----------------
...........................................................................................................................GCAGGGCCCTGCTGACATG................................................................. 191.000.00----------1.00-----------------------------
.....................................................................GGGGAGAGGCGGGGGCAC........................................................................................................................ 181.000.00--------------------1.00-------------------
...............................................................................................................................................GCTTCCTCCCGTAGGA................................................ 161.000.00---------------1.00------------------------
..............................................................................................................................................................................ACTCAGCTGAGTAAAGA................ 1770.290.29-----------------------------------0.29----
..............................................................................................................................................................................TCTTTACTCAGCTGAGTTC.............. 190.140.00-----------------------------------0.14----
..............................................................................................................................................................................TCTTTACTCAGCTGAGTTCTA............ 210.140.00-----------------------------------0.14----