ID: uc001zki.2_intron_7_0_chr15_40056116_r.5p
GENE: (4)
chr15:40057593-40057842-


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(1)
BREAST
(17)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER

Sense strand
TTAAGAAGCAAGGTCTAGAAATGAGAATAAAGCTGTGGGAAGAAATTAAGGTAAGAATTATCTAACCTTATGCTGACATGTAAGAAATAAATTCTCCTGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGCTGAGGCAGGAGGATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGACAACATAAAGAGACCCCATCTGTACAAAAAAAACCTAAAAAATTAGCCAGGCATGGTA
....................................................................................................................((.((((...((((........))))..((.((((((.....)))))).))..)))).))..........................................................................
...................................................................................................................116.........................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................................................................................................................................GAGGATTGCTTGAGGCATC..............................................................................196.000.00--6.00----------------------------
.....................................................................................................................................................................AGGCCAGGAGTTTGAGACCAGCCGGCC..........................................................273.000.003.00------------------------------
........................................................................................................................................TAGGGAGGCTGAGGCAGGAGGAACA.........................................................................................252.000.00-2.00-----------------------------
.....................................................................................................................................................................AGGCCAGGAGTTTGAGACCAGCCGACC..........................................................272.000.002.00------------------------------
...................................................................................................................................................................TGAGGCCAGGAGTTTGAGACCAGCCGGCC..........................................................292.000.002.00------------------------------
.....................................................................................................................................................................AGGCCAGGAGTTTGAGACCAGCCGAC...........................................................262.000.002.00------------------------------
.......................................................................................................................................................AGGAGGATTGCTTGAGGCCAGGAGTCGG.......................................................................282.000.001.001.00-----------------------------
.......................................................................................................................................................AGGAGGATTGCTTGAGGCCAGTCC...........................................................................242.000.002.00------------------------------
.....................................................................................................................................................................AGGCCAGGAGTTTGAGACCAGCCGGC...........................................................262.000.002.00------------------------------
.....................................................................................................................................................................AGGCCAGGAGTTTGAGACCAGCCGAGC..........................................................272.000.001.001.00-----------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGAGGGCC..........................................................................................231.000.00-1.00-----------------------------
..........................................................................................................................................................AGGATTGCTTGAGGCCAGGAGAAA........................................................................241.000.00---------------1.00---------------
..................................................................................................................................................................TTGAGGCCAGGAGTTTGAGACCAGCCGAGC..........................................................301.000.001.00------------------------------
.......................................................................................................................................................AGGAGGATTGCTTGAGGCAT...............................................................................201.000.00---1.00---------------------------
.......................................................................................................................................................AGGAGGATTGCTTGAGGCCATCAA...........................................................................241.000.00-----------1.00-------------------
.......................................................................................................................................................................GCCAGGAGTTTGAGACCAGCCGGCC..........................................................251.000.001.00------------------------------
........CAAGGTCTAGAAATGGTTA...............................................................................................................................................................................................................................191.000.00------------------------1.00------
..............................................................................................................................................................................................................................AAACCTAAAAAATTACACA.........191.000.00---1.00---------------------------
............................................................................................................................................................................GAGTTTGAGACCAGCCTGGACATGC.....................................................251.000.00--------1.00----------------------
..................................................................................................................................................GAGGCAGGAGGATTGCTAGA....................................................................................201.000.00------------------1.00------------
...................................................................................................................................................AGGCAGGAGGATTGCTTGAGGACTC..............................................................................251.000.00-1.00-----------------------------
................................................................................................................................................CTGAGGCAGGAGGATTGCTAGT....................................................................................221.000.00--------------1.00----------------
........................................................................................................................CTGTAATCCCAGCACTTAGG..............................................................................................................2001.001.00----------------------1.00--------
.............................................................................................................................................................................................................................AAAACCTAAAAAATTATCCG.........201.000.00---------------------------1.00---
..................................................................................................................................AGCACTTAGGGAGGCTGAGGCAGGAGGACCAC........................................................................................321.000.00-1.00-----------------------------
.............................................................................................................................................AGGCTGAGGCAGGAGGATTGAAC......................................................................................231.000.00-------------1.00-----------------
........CAAGGTCTAGAAATGGTT................................................................................................................................................................................................................................181.000.00-------------------------1.00-----
...................................................................................................................................................................TGAGGCCAGGAGTTTGAGACCAGCCGGC...........................................................281.000.001.00------------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGAGGATTGCCCC.....................................................................................281.000.00-1.00-----------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGACCAC...........................................................................................221.000.001.00------------------------------
...................................................................................................................................................................TGAGGCCAGGAGTTTGAGACCAGCCGCCC..........................................................291.000.00-1.00-----------------------------
.............................................................................................................................................AGGCTGAGGCAGGAGGATTGCTTGTTGT.................................................................................281.000.00-1.00-----------------------------
..........................................................................................................................................................AGGATTGCTTGAGGCCAGGAGACCG.......................................................................251.000.00-1.00-----------------------------
...................................................................................................................................................AGGCAGGAGGATTGCTTGAGGCCAGGAGTCG........................................................................311.000.001.00------------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGCGCA............................................................................................211.000.00-----------------1.00-------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGACTA............................................................................................211.000.00--------------------1.00----------
.............................................................................................................................................AGGCTGAGGCAGGAGGATTGCATGT....................................................................................251.000.00------1.00------------------------
.........................................................................................................................................................................................GCCTGGACAACATAAAGAGAACCA.........................................241.000.00------1.00------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGAGGATTGCTGA.....................................................................................281.000.001.00------------------------------
..........................................................................................................................................GGGAGGCTGAGGCAGGAGGATTTAGC......................................................................................261.000.00----------1.00--------------------
..........................................................................................................................................................AGGATTGCTTGAGGCCAGGACTC.........................................................................231.000.00-1.00-----------------------------
.......................................................................................................................................................AGGAGGATTGCTTGAGGCCAGGTAGA.........................................................................261.000.00----------------------------1.00--
.......................................................................................................................................................AGGAGGATTGCTTGAGGCCAGGTC...........................................................................241.000.00-----------------------1.00-------
...................................................................................................................................................................TGAGGCCAGGAGTTTGAGACCAGCCGGGT..........................................................291.000.001.00------------------------------
.....................................................................................................................CACCTGTAATCCCAGCACTTAAAGA............................................................................................................251.000.00----1.00--------------------------
..........................................................................................................................................GGGAGGCTGAGGCAGGAGGATTTCA.......................................................................................251.000.00-1.00-----------------------------
.........................................................................................................................................AGGGAGGCTGAGGCAGGACAC............................................................................................211.000.00-1.00-----------------------------

Antisense strand
TTAAGAAGCAAGGTCTAGAAATGAGAATAAAGCTGTGGGAAGAAATTAAGGTAAGAATTATCTAACCTTATGCTGACATGTAAGAAATAAATTCTCCTGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGCTGAGGCAGGAGGATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGACAACATAAAGAGACCCCATCTGTACAAAAAAAACCTAAAAAATTAGCCAGGCATGGTA
....................................................................................................................((.((((...((((........))))..((.((((((.....)))))).))..)))).))..........................................................................
...................................................................................................................116.........................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................................................................................................GACCCCATCTGTACAAAAAACTC........................ 233.000.001.002.00-----------------------------
.........................................................................................................................................................GAGGATTGCTTGAGGCCAATT............................................................................ 213.000.00-----2.00--------------------1.00----
.......................................................................................................GGCATGGTGGCTCACACCTGTGCA........................................................................................................................... 242.000.002.00------------------------------
.......................................................................................................GGCATGGTGGCTCACACCTGTGTCC.......................................................................................................................... 252.000.00-2.00-----------------------------
....................................GGGAAGAAATTAAGGTATGA.................................................................................................................................................................................................. 201.000.00------------1.00------------------
..........................................................................................................................................................AGGATTGCTTGAGGCCAGGAGTATTC...................................................................... 261.000.001.00------------------------------
...........................................................................................................................................................................GGAGTTTGAGACCAGCCTGGACAAGACC................................................... 281.000.001.00------------------------------
.....................................................................................................................CACCTGTAATCCCAGCACTTAGGGCGC.......................................................................................................... 271.000.00----1.00--------------------------
...................................................................................................................................................................................................................................TAAAAAATTAGCCAGGCATGGTAAGT 261.000.00-------1.00-----------------------
...................................................................................................................................CCTCAGCCTCCCTAAGTGC.................................................................................................... 1901.001.00-------------------1.00-----------
...............TAGAAATGAGAATAAAGTAAC...................................................................................................................................................................................................................... 211.000.00------------------------------1.00
.........................................................................................................................................................GAGGATTGCTTGAGGCCAATTC........................................................................... 221.000.00---1.00---------------------------
.........................................................................................................................................................GAGGATTGCTTGAGGCCAGCT............................................................................ 211.000.00---------1.00---------------------
.........................................................................................................................................................................................................GAGACCCCATCTGTACAGCGG............................ 211.000.00-1.00-----------------------------
......................GAGAATAAAGCTGTGGTCTT................................................................................................................................................................................................................ 201.000.00-----------------------------1.00-
...........................................................................................................................................................................GGAGTTTGAGACCAGCCTGGACAGGGC.................................................... 271.000.001.00------------------------------
......................................................................................................................................................................................................................TACAAAAAAAACCTAAGTTG................ 201.000.00-------1.00-----------------------
...................................................................................................................................................................................AGACCAGCCTGGACAACATACC................................................. 221.000.00----------------1.00--------------
.........................................................................................................................................................GAGGATTGCTTGAGGCCAGTCA........................................................................... 221.000.00---1.00---------------------------
............................................................................................................................................GAGGCTGAGGCAGGAGGATGCC........................................................................................ 221.000.00-1.00-----------------------------
.......................................................................................................GGCATGGTGGCTCACACCTGTGACC.......................................................................................................................... 251.000.001.00------------------------------
.........................................................................................................................................................GAGGATTGCTTGAGGCCAATTT........................................................................... 221.000.00---1.00---------------------------
....................................................................................................................ACACCTGTAATCCCAGCACTTAGGGTAGC......................................................................................................... 291.000.00----1.00--------------------------
..........................................................................................................................................................................................................................AAAAAAACCTAAAAAATGGA............ 201.000.00---------------------1.00---------
........................................................................................................................................TAGGGAGGCTGAGGCAGGAGGATCCGC....................................................................................... 271.000.001.00------------------------------