ID: uc001zii.2_intron_12_0_chr15_34677980_r.3p
GENE: (3)
chr15:34677930-34678179-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
TTTGAGTTGTGAGGCTGTGGCTGAAAACCAACAAAGACCCAAATCCTCTGTCCTTGGGAGCTTGGGAACAGTTCCTGTTCCCATTGGGTCTGAGAACTTTGCCTTTAAAATCCATTCCTGGCCCCTGCCTGCCGCTTCCTGTCTGGGGAATAGAGTTGAGGGGGCCACCCTCCATCACTTTAATTTGACTCTCCCCACAGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGTAACGTGATT
....................................................................................(((((..(((........)))....)))))....((((((((....((...(((((.....)))))....))...))))))))...................................................................................
...........................................................................76.........................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGA.........2284.000.0084.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAA........2328.000.0028.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAAA......2515.000.0015.00-------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAAA.......3014.000.0014.00-------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGA.........2711.000.0011.00-------------------------------------
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGGGTT....................................................................................2610.000.00-10.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAA.......249.000.009.00-------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAAA.......278.000.008.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGA.......................................................................................228.000.00-6.00--1.00------------------------1.00--------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGT......................................................................................237.000.00-7.00------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGA.........287.000.006.00--------1.00----------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGA.........266.000.006.00-------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAAAA......315.000.004.00--1.00----------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAA........265.000.005.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGC.........224.000.004.00-------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGA.........304.000.001.00-2.001.00----------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGG.........................................................................................2003.003.00---------1.00-------1.001.00-------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGAA........293.000.003.00-------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGAAAA......283.000.003.00-------------------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGAA........273.000.003.00-------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGAAA.......293.000.003.00-------------------------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGAAA.......283.000.003.00-------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGAA........283.000.003.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAT........233.000.003.00-------------------------------------
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGAA........303.000.003.00-------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAGAAGCA........282.000.002.00-------------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGCAAA......282.000.002.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGAA.......................................................................................2202.003.00-----------2.00--------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGA.........252.000.002.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGCA........232.000.002.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGT.....................................................................................2402.001.00----2.00---------------------------------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGAAA.......252.000.001.00---------------------------------1.00---
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGCA........252.000.00-----2.00--------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGC.........252.000.002.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGT.......................................................................................222.000.00-2.00------------------------------------
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGAAA.......262.000.002.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGTT........232.000.002.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGAAAA......................................................................................232.000.00-2.00------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAGGA............191.000.001.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAAA............191.000.001.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAAAA...........201.000.001.00-------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAT..........271.000.00--1.00-----------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGCA........311.000.00--1.00-----------------------------------
.........................................................................................................................................................................................................................AGTGGAACATCAGCTGGAAGAAGCAA.......261.000.00-----1.00--------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGT............191.000.001.00-------------------------------------
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGT.......................................................................................231.000.00----------------------1.00---------------
................................................................................................................................................GGGGAATAGAGTTGAGGGA.......................................................................................191.000.00------------1.00-------------------------
.................................................................................CATTGGGTCTGAGAACTTTGCCTCTG...............................................................................................................................................261.000.00------------------------1.00-------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGC.........281.000.001.00-------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAG..............251.000.00-------1.00------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGTAA......................................................................................2301.003.00--------------------1.00-----------------
.................................................................................................................................................................................................................AAGAAACAAGTGGAACATCAGCTGGAAGAAGA.........321.000.00--1.00-----------------------------------
.........TGAGGCTGTGGCTGAAAACCAACAAAGACC...................................................................................................................................................................................................................3021.001.001.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGCT....................................................................................2501.001.00----------------1.00---------------------
.......................................................................................................................................................................................................................CAAGTGGAACATCAGCTGGAAGAAGC.........261.000.001.00-------------------------------------
.................................................................................................................................................................................................................AAGAAACAAGTGGAACATCAGCTGAAG..............271.000.001.00-------------------------------------
..............................................................................................................................................CTGGGGAATAGAGTTGAGGA........................................................................................201.000.00-----------------------1.00--------------
................................................................................CCATTGGGTCTGAGAACTCTG.....................................................................................................................................................211.000.00---------------1.00----------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAAGCAAA......311.000.001.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGGC.....................................................................................2401.001.00----------1.00---------------------------
..............................................................................................................................................................................................................CAGAAGAAACAAGTGGAACATCAGCTGGGAG.............311.000.00-------------------------------1.00------
............................................................................................................................................GTCTGGGGAATAGAGTTGAGGGGGT.....................................................................................251.000.00---------------------------------1.00----
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGAAA.......311.000.00--------------------------------1.00-----
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGG......................................................................................2301.001.00----------1.00---------------------------
..............................................................................................................................................CTGGGGAATAGAGTTGAGGGGGT.....................................................................................231.000.00----------------------------1.00---------
.................................................................................CATTGGGTCTGAGAACTCTG.....................................................................................................................................................201.000.00---1.00----------------------------------
..............................................................................................................................................................................TCACTTTAATTTGACATT..........................................................181.000.00-----------------------------------1.00--
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAAT.......241.000.001.00-------------------------------------
...........................................................................TGTTCCCATTGGGTCTGAGAACTCTG.....................................................................................................................................................261.000.00---1.00----------------------------------
.........................................................................................CTGAGAACTTTGCCTTC................................................................................................................................................171.000.00-------------------1.00------------------
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCTGGAAGAAGA.........291.000.00---1.00----------------------------------
........................................................................................................................................................................................................................AAGTGGAACATCAGCTGGAAGAAGTAAA......281.000.001.00-------------------------------------
..............................ACAAAGACCCAAATCCTCTGGATT....................................................................................................................................................................................................241.000.001.00-------------------------------------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGAA......................................................................................231.000.00---------------------------1.00----------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGA.........................................................................................201.000.00--------------------------1.00-----------
.............................................................................................................................................TCTGGGGAATAGAGTTGAGGGGA......................................................................................231.000.00------------------------------1.00-------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGA.........231.000.00------------1.00-------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAAGAAGAG........231.000.001.00-------------------------------------
.....................................................................................................................................................................................................................AACAAGTGGAACATCAGCTGGAAGAATT.........281.000.001.00-------------------------------------
......................................................................................................................................................................................................................ACAAGTGGAACATCAGCTGGAAA.............231.000.001.00-------------------------------------
...........................................................................................................................................................................................................................TGGAACATCAGCTGGAGGAA...........201.000.001.00-------------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGAAA.......321.000.001.00-------------------------------------
............................................................................................................................................................................................................................GGAACATCAGCTGGAAGAAGA.........211.000.001.00-------------------------------------
.......................................................................................................................................................................................TTTGACTCTCCCCACGCAC................................................191.000.00-------------1.00------------------------
............................................................................................................................................................................................CTCTCCCCACAGAAAAAG............................................181.000.00------------------------------------1.00-
...................................................................................TTGGGTCTGAGAACTCTG.....................................................................................................................................................181.000.00---------------------1.00----------------
....................................................................................................................................................................................................................AAACAAGTGGAACATCAGCGGGA...............231.000.00-------1.00------------------------------
...................................................................................................................................................................................................................GAAACAAGTGGAACATCAGCTGGAAGAAGAAAA......331.000.00--1.00-----------------------------------
..........................................................................................................................................................................................................................GTGGAACATCAGCTGGAAGAAGAAAA......261.000.00--------------1.00-----------------------
........GTGAGGCTGTGGCTGAAAACCAACAAAGAC....................................................................................................................................................................................................................3020.500.500.50-------------------------------------
.................................................GTCCTTGGGAGCTTGGGAACAGT..................................................................................................................................................................................2320.500.500.50-------------------------------------
.......TGTGAGGCTGTGGCTGAAAACCAACAAAGACC...................................................................................................................................................................................................................3220.500.500.50-------------------------------------
..........GAGGCTGTGGCTGAAAACCAACAAAGACC...................................................................................................................................................................................................................2920.500.500.50-------------------------------------
..................................................................................ATTGGGTCTGAGAACTTTGC....................................................................................................................................................2090.110.11-------------------------------------0.11

Antisense strand
TTTGAGTTGTGAGGCTGTGGCTGAAAACCAACAAAGACCCAAATCCTCTGTCCTTGGGAGCTTGGGAACAGTTCCTGTTCCCATTGGGTCTGAGAACTTTGCCTTTAAAATCCATTCCTGGCCCCTGCCTGCCGCTTCCTGTCTGGGGAATAGAGTTGAGGGGGCCACCCTCCATCACTTTAATTTGACTCTCCCCACAGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGTAACGTGATT
....................................................................................(((((..(((........)))....)))))....((((((((....((...(((((.....)))))....))...))))))))...................................................................................
...........................................................................76.........................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)
.......................................CAAATCCTCTGTCCTACC................................................................................................................................................................................................. 182.000.00------2.00-------------------------------
......................GAAAACCAACAAAGAGGAA................................................................................................................................................................................................................. 192.000.00--------2.00-----------------------------
....................................................................................TGGGTCTGAGAACTTTGCCTTTAAAATCCACA...................................................................................................................................... 321.000.001.00-------------------------------------
............................CAACAAAGACCCAAATCCTCTGTCCTA................................................................................................................................................................................................... 271.000.001.00-------------------------------------
..........................................................................................TGAGAACTTTGCCTTTAAAATAA......................................................................................................................................... 231.000.001.00-------------------------------------
...............................CAAAGACCCAAATCCTCTGTCCTTGGGAA.............................................................................................................................................................................................. 291.000.001.00-------------------------------------
........................................................................................................................................................................CCTCCATCACTTTAATTAA............................................................... 191.000.00-------------------------1.00------------
................................................................................TTTTAAAGGCAAAGTTCTCAGACCCAATGG............................................................................................................................................ 3070.710.710.71-------------------------------------
..............................................................................TTTAAAGGCAAAGTTCTCAGACCCAATGGGA............................................................................................................................................. 3160.330.330.33-------------------------------------
..........................AAGGACAGAGGATTTGGGTCTTTGTTGGT................................................................................................................................................................................................... 2960.170.170.17-------------------------------------
..............................................................................TTAAAGGCAAAGTTCTCAGACCCAATGGGA.............................................................................................................................................. 3060.170.170.17-------------------------------------
..........................CAAGGACAGAGGATTTGGGTCTTTGTTGGT.................................................................................................................................................................................................. 3060.170.170.17-------------------------------------
...................................................................................TGGATTTTAAAGGCAAAGTTCTCAGACCCAA........................................................................................................................................ 3170.140.140.14-------------------------------------
.................................................................................TTTTAAAGGCAAAGTTCTCAGACCCAATG............................................................................................................................................ 2970.140.140.14-------------------------------------
................................................................................TTAAAGGCAAAGTTCTCAGACCCAATGG.............................................................................................................................................. 2870.140.140.14-------------------------------------
................................................................................CCATTGGGTCTGAGAACTTTGCCTTTAAAAA........................................................................................................................................... 310.140.000.14-------------------------------------
.................................................................................TTTAAAGGCAAAGTTCTCAGACCCAATG............................................................................................................................................. 2870.140.140.14-------------------------------------
................................................................................TTTAAAGGCAAAGTTCTCAGACCCAATGG............................................................................................................................................. 2970.140.140.14-------------------------------------