ID: uc001zhp.2_intron_1_0_chr15_34437693_r.3p
GENE: (8)
chr15:34437643-34437892-


(1)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(3)
CERVIX 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
TGACATGTATTATTCTAAAAGTTATTTGATTTTTTTTTAATTTCTCTCCACGTTCCCAAATGTTTTATTTCAAATAGCATCATTTTCTCCTGAAAAATACCTGAAAAATTTTAGAACAGTTTTTATTATGCATATTTATGATGAAAGTTTGTATCTTAATGTATTTGCTTTCTCATTTTTCTTCCTTTTTTTTCTTTTAGAAATATTCAAATTTTAAAACAACAATTAAGTGGATTATGGGAACAGGAAA
..............................................................................................................................................................................................((((.....))))...............................................
.....................................................................................................................................................150......................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		TAX577742(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTTTAG..................................................3315.005.001.00---3.001.00---------------
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTTAAATG...............................................224.000.002.001.00---1.00---------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTTCAG..................................................334.000.002.002.00-------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTTAG..................................................2022.502.501.500.50---0.50---------------
..........................................................................................................................................................CTTAATGTATTTGCTTTCTCATT.........................................................................2312.002.00-------2.00-------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTAG.....................................................212.000.002.00--------------------
...............................................................................................................................................................................TTTTTCTTCCTTTTTTTTCTTTAC...................................................242.000.00--2.00------------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTTAG...................................................322.000.001.001.00-------------------
............................................................................................................................................................................TCATTTTTCTTCCTTTTTTTAG........................................................222.000.001.001.00-------------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTTCCAG..................................................242.000.002.00--------------------
..............................................................................................................................................................................ATTTTTCTTCCTTTTTTTTCTTTTTG..................................................262.000.002.00--------------------
..................................................................................................................AACAGTTTTTATTATGCATATTTATG..............................................................................................................2612.002.00---2.00-----------------
.........................................................................................................................................................................................................................AACAACAATTAAGTGGATTATG...........2221.501.50--------1.50------------
..................................................................................................................................CATATTTATGATGAAAGT......................................................................................................1811.001.00---1.00-----------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTCCTC......................................................291.000.00-1.00-------------------
.................................................................................................................................................................................TTTCTTCCTTTTTTTTCTTGGC...................................................221.000.00--1.00------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTTAAAG................................................221.000.001.00--------------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTATTT.........................................................261.000.00-1.00-------------------
........................................................................................................................................TATGATGAAAGTTTGGAT................................................................................................181.000.00----------------1.00----
...................................................................................................................................................................................TCTTCCTTTTTTTTCGAT.....................................................181.000.00---1.00-----------------
...................................................................................................................................................................................TCTTCCTTTTTTTTCTTTTAAATT...............................................241.000.00---1.00-----------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTCTAG..................................................331.000.00-1.00-------------------
..............................................................................................................................................................................ATTTTTCTTCCTTTTTTTTCTTTCAAG.................................................271.000.001.00--------------------
........................................................................................................................................................................................CTTTTTTTTCTTTTAGATTTG.............................................211.000.00---1.00-----------------
...................................................................................................................................................................................TCTTCCTTTTTTTTCTTTTATATG...............................................241.000.00--1.00------------------
.............................................................................................................................................................................CATTTTTCTTCCTTTTTTTTTCAG.....................................................241.000.00-1.00-------------------
...............................................................................................................................................................................TTTTTCTTCCTTTTTTTTGTTG.....................................................221.000.00--1.00------------------
............................ATTTTTTTTTAATTTCTTTAG.........................................................................................................................................................................................................211.000.001.00--------------------
.............................................................................................................................................................................CATTTTTCTTCCTTTTTTTTG........................................................211.000.001.00--------------------
...................................................................................................................................................................................TCTTCCTTTTTTTTCTTTTCTTT................................................231.000.00-----1.00---------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTAG....................................................311.000.001.00--------------------
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTTAATG................................................211.000.00---1.00-----------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTAGG......................................................201.000.00------1.00--------------
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTACTG.................................................201.000.001.00--------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTTACATG...............................................231.000.00-1.00-------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTATG..................................................201.000.00-1.00-------------------
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTTACTT................................................211.000.00----1.00----------------
.................................................................................................................................................................................TTTCTTCCTTTTTTTTCTTTGGC..................................................231.000.00--1.00------------------
.................................................................................................................................................................................TTTCTTCCTTTTTTTTCTTTTCATG................................................251.000.00----1.00----------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTGGG....................................................221.000.00--1.00------------------
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTTACG.................................................201.000.001.00--------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTTAATAG...............................................231.000.00-1.00-------------------
...............................................................................................................................................................................TTTTTCTTCCTTTTTTTTCTTTCG...................................................241.000.00-----1.00---------------
......................................................................................................GAAAAATTTTAGAACACAAC................................................................................................................................201.000.00---------1.00-----------
............................................................................................................................................................................TCATTTTTCTTCCTTGTTA...........................................................191.000.00---------------1.00-----
..................................TTTTAATTTCTCTCCACAGTT...................................................................................................................................................................................................211.000.00---1.00-----------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTTTTA...................................................2311.001.001.00--------------------
...........................................................................................................................................................................CTCATTTTTCTTCCTTTTTTTTTTG......................................................251.000.001.00--------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTTCG..................................................201.000.001.00--------------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTGTG....................................................221.000.00--1.00------------------
......................................................................................................................................................................................TCCTTTTTTTTCTTTTAAATG...............................................211.000.001.00--------------------
.......................................................................................................................................................................CTTTCTCATTTTTCTTCCTTTTTTTTCTTTGAG..................................................331.000.001.00--------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTCTCG..................................................201.000.00-1.00-------------------
....................................................................................................................................................................................CTTCCTTTTTTTTCTTTAAG..................................................201.000.00----1.00----------------
.................................................................................................................................................................................TTTCTTCCTTTTTTTTGTGG.....................................................201.000.00------1.00--------------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTTTTACA.................................................2511.001.00--1.00------------------
........................................................................................CCTGAAAAATACCTGAAAAA..............................................................................................................................................2011.001.00-------------1.00-------
................................................................................................................................................................................................................AAATTTTAAAACAACAATTAAGTGGATTATGG..........3221.001.00---1.00-----------------
........................................................................................................................................................................................................................AAACAACAATTAAGTGGATTATG...........2320.500.50-------------------0.50-
...................................................................................................................................................................................................................................AAGTGGATTATGGGAACA.....1820.500.50-----------------0.50---
...................................................................................................................................................................................TCTTCCTTTTTTTTCTTTTAG..................................................2120.500.50----0.50----------------
........................................................................................................................................................................................................AAATATTCAAATTTTAAAACA.............................2120.500.50------------------0.50--
...............................................................................................................................................................................................................................AATTAAGTGGATTATGGGAACAGGA..2520.500.50------0.50--------------
....................................................................................................................................................................................................................................AGTGGATTATGGGAACAGG...1920.500.50--------------------0.50
.....................................................................................................................................................................................TTCCTTTTTTTTCTTTTAG..................................................1950.200.200.20--------------------

Antisense strand
TGACATGTATTATTCTAAAAGTTATTTGATTTTTTTTTAATTTCTCTCCACGTTCCCAAATGTTTTATTTCAAATAGCATCATTTTCTCCTGAAAAATACCTGAAAAATTTTAGAACAGTTTTTATTATGCATATTTATGATGAAAGTTTGTATCTTAATGTATTTGCTTTCTCATTTTTCTTCCTTTTTTTTCTTTTAGAAATATTCAAATTTTAAAACAACAATTAAGTGGATTATGGGAACAGGAAA
..............................................................................................................................................................................................((((.....))))...............................................
.....................................................................................................................................................150......................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		TAX577742(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................CCTTTTTTTTCTTTTACACA............................................... 201.000.00------------1.00--------
........................................................................................................................................................................................................................AAACAACAATTAAGTGCC................ 181.000.00--------------1.00------
................................TTTTTTAATTTCTCTCTGGC...................................................................................................................................................................................................... 201.000.00-----------1.00---------
................................................................................................................................................................................TTTTCTTCCTTTTTTTTCTTTTGAAG................................................ 261.000.00----------1.00----------