ID: uc001yvp.3_intron_18_0_chr15_23317085_r.3p
GENE: (5)
chr15:23317035-23317284-


(1)
AGO1.ip
(2)
AGO2.ip
(3)
B-CELL
(5)
BRAIN
(4)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(4)
FIBROBLAST
(3)
HEART
(3)
HELA
(3)
LIVER
(1)
OTHER
(6)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CGCACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGGCACACACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGTTACGCACCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGA
................................................................................................................................(((..((((((((.((.((((.(((((.(((........)))))...))).)).)).)).)))))))).)))..................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189782SRR189786SRR189784SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577579(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038860(GSM458543)
MM426. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040008(GSM532893)
G727N. (cervix)
...............................................................................................................................TCTGCTGGGAGCCATGGAAGGACCAGGGCAGGTTACGCACCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGT.................................................749.000.00-9.00--------------------------------------------------
............ACTGAGGTCTGCTGGGAGCCACGG......................................................................................................................................................................................................................249.000.006.00-3.00-------------------------------------------------
...............................................................................................................................TCTGCTGGGAGCCATGGAAGGAT....................................................................................................236.000.00-----------3.003.00---------------------------------------
...............................................................................................................................TCTGCTGGGAGCCATGGAAGGACT...................................................................................................246.000.00--------3.003.00------------------------------------------
..................................................................................................................................................................................ATCTCTACTTTGGCTTTCTCATT.................................................235.000.00---4.00---------------1.00--------------------------------
.............................................................................................................................................................................................................................GGCCGAGTGATTGGTGAGC..........1943.253.25-----3.25----------------------------------------------
.................................................................................................................................TGCTGGGAGCCATGGAAGGACAA..................................................................................................233.000.00-------3.00--------------------------------------------
...................TCTGCTGGGAGCCATGGAAT...................................................................................................................................................................................................................203.000.00----3.00-----------------------------------------------
...................TCTGCTGGGAGCCATGGAAGGT.................................................................................................................................................................................................................223.000.00-------------3.00--------------------------------------
................................................................TAACTGAGGTCTGCTGGGAGCCACGG................................................................................................................................................................263.000.00--3.00-------------------------------------------------
...................TCTGCTGGGAGCCATGGAAAAAA................................................................................................................................................................................................................233.000.00------3.00---------------------------------------------
.........................................................................TCTGCTGGGAGCCATGGAAGGACA.........................................................................................................................................................243.000.00----------3.00-----------------------------------------
......................................................................................ATGGAAGGACCAGGGCAGGGCACACACCCCC.....................................................................................................................................312.000.001.00-1.00-------------------------------------------------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCCCAG..................................................241.000.00---------------1.00------------------------------------
.....................................AGGACCAGGGCAGGGCATGCACCCTCCC.........................................................................................................................................................................................281.000.001.00---------------------------------------------------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCTCAG..................................................2441.001.00-------------------------0.25---0.25--------0.25----0.25--------
......................................................................................................................................................................................................................................ATTGGTGAGCTGGGAGAGGT201.000.00---------------------1.00------------------------------
..................................................................................................................................................................................ATCTCTACTTTGGCTTTCTCAGT.................................................231.000.00----------------------1.00-----------------------------
.......................................................................................TGGAAGGACCAGGGCAGGGCACACACCCTCCC...................................................................................................................................321.000.001.00---------------------------------------------------
...........................................AGGGCAGGGCATGCATCTG............................................................................................................................................................................................191.000.00----------------1.00-----------------------------------
.................................TGGAAGGACCAGGGCAGGGCATGCACCCCC...........................................................................................................................................................................................301.000.001.00---------------------------------------------------
..................................................................................................................................................................................ATCTCTACTTTGGCTTTCTCATA.................................................231.000.00---1.00------------------------------------------------
.....................................................................................................................................................................................TCTACTTTGGCTTTCTCAGT.................................................201.000.00---------------1.00------------------------------------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCTCAGT.................................................2540.751.00------------------------------------------0.25-0.250.25------
............................................................................................................................................................................TAACTGATCTCTACTTTGGCTTT.......................................................2340.750.75------------------------0.25---------------0.250.25----------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCT.....................................................2140.750.75------------------------0.25--------0.25--0.25---------------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCTCA...................................................2340.500.50-------------------------0.25------0.25-------------------
............................................................................................................................................................................TAACTGATCTCTACTTTGGCTT........................................................2240.500.50----0.25-----------------------------------------0.25-----
..................................................................................AGCCATGGAAGGACCAGGGCAGGGCACACACCCT......................................................................................................................................3430.330.330.33---------------------------------------------------
.............................................................................................................................................................................AACTGATCTCTACTTTGGCTTT.......................................................2240.250.25--------------------------0.25-------------------------
............................................................................................................................................................................TAACTGATCTCTACTTTGGCT.........................................................2140.250.25----------------------------------0.25-----------------
......................................................................................................................................................................................................................AGGCCTAGGCCGAGTGATTGGTGAGCTGGGA.....3140.250.25-----------------------------------0.25----------------
...........................................................................................................................................................................................................................TAGGCCGAGTGATTGGTGAGCTGGGA.....2640.250.25---------------------------------------0.25------------
.....................................................................................................................................................................................................................CAGGCCTAGGCCGAGTGATTGGTGA............2540.250.25------------------------------------------------0.25---
............................................................................................................................................................................TAACTGATCTCTACTTTG............................................................1840.250.25-------------------------------0.25--------------------
................................................................................................................................................................................TGATCTCTACTTTGGCTTTCTTAT..................................................2440.250.75-------------------------------------0.25--------------
.......................................................................................................................................................................................................................GGCCTAGGCCGAGTGATTGG...............2040.250.25------------------------------0.25---------------------
........................................................................................................................................................................CTCCTAACTGATCTCTACTTTGGC..........................................................2440.250.25-----------------------------------------------0.25----
..................................GGAAGGACCAGGGCAGGGCAT...................................................................................................................................................................................................2140.250.25----------------------------0.25-----------------------
.................................................................................................................................................................................................................................GAGTGATTGGTGAGCTG........1740.250.25--------------------------0.25-------------------------
........................................................................................................................................................................................................................................TGGTGAGCTGGGAGAGGA1890.220.22------------------------0.11--0.11------------------------
.........................................................................................GAAGGACCAGGGCAGGGCACACACCCTCCTA..................................................................................................................................3160.170.17-------------------------------------------------0.17--
........................................................................................GGAAGGACCAGGGCAGGGCACA............................................................................................................................................2270.140.14--------------------------------------------------0.14-
....................................................................................................................................................................................................................................TGATTGGTGAGCTGGGAG....1870.140.14---------------------------------------------------0.14
......................................................................................................................................................................................................................................ATTGGTGAGCTGGGAGAG..1870.140.14---------------------------0.14------------------------

Antisense strand
CGCACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGGCATGCACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGGCACACACCCTCCTAACTGAGGTCTGCTGGGAGCCATGGAAGGACCAGGGCAGGTTACGCACCCTCCTAACTGATCTCTACTTTGGCTTTCTCAGGATGGGCCTCCTCCAGGCCTAGGCCGAGTGATTGGTGAGCTGGGAGAGGA
................................................................................................................................(((..((((((((.((.((((.(((((.(((........)))))...))).)).)).)).)))))))).)))..................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189782SRR189786SRR189784SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577579(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038860(GSM458543)
MM426. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040008(GSM532893)
G727N. (cervix)
.............................................................................................................ACACCCTCCTAACTGAATAT......................................................................................................................... 202.000.00--------------1.00--------1.00----------------------------
.................................................................................................................................................................................GATCTCTACTTTGGCGCA....................................................... 181.000.00------------------1.00---------------------------------
.....................................................ATGCACCCTCCTAACTAGGA................................................................................................................................................................................. 201.000.00--------------------1.00-------------------------------
.............................................................................................................ACACCCTCCTAACTGAATAG......................................................................................................................... 201.000.00--------------1.00-------------------------------------
.....................................................ATGCACCCTCCTAACTGACGCT............................................................................................................................................................................... 221.000.00-----------------1.00----------------------------------