ID: uc001ytv.1_intron_0_0_chr15_21122127_r.5p
GENE: NF1P2(7)
chr15:21125541-21125790-


(1)
AGO1.ip OTHER.mut 		(1)
B-CELL 		(1)
BRAIN 		(16)
BREAST 		(12)
CELL-LINE 		(15)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
OTHER 		(1)
SKIN 		(1)
TESTES 		(2)
UTERUS

Sense strand
CGGTCCAGCCTTAACCTTACCAGTTAAAAGTTTGAGGAATTTATGATGAGGTAAAGTACAACCTTGAAATGTAGATTGCTTTCTTTTTGGTTGAGAAGCAGAGTTTACCACTAGGCCACTTGTTAGATATGATAGAAGACTATGAGGAAAGATGCATCTAATAATCACATTGCCATGTTTGGGGACCCAACTTTTCTCCTATTCTATATATTATTTATTTATATATATATATATATATAGAAAGAATATG
.......................................................................(((((..((((((((.(((((.....((..(((.....)))..))...((((((....))))))..))))).))))))))....))))).........((.(((....))).)).................................................................
......................................................................71.................................................................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR040042(GSM532927)
G428N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577744(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532875(GSM532875)
G547N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................................................ATCACATTGCCATGTATTT....................................................................1922.000.001.003.007.001.00-----1.001.00-1.00-1.00--1.00-----1.001.001.00---1.00---------------------1.00----
...................................................................................................................................................................ATCACATTGCCATGTATT.....................................................................1822.000.003.003.004.001.00-2.00----2.00--1.00--------------1.00--1.00---1.00-----------1.00--1.00-1.00---
...................................................................................................................................................................ATCACATTGCCATGTGTTA....................................................................1920.000.0012.008.00------------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTATTA....................................................................1915.000.004.002.002.001.00-2.001.00-----1.00-------1.00------1.00----------------------------
...................................................................................................................................................................ATCACATTGCCATGTGTTT....................................................................1913.000.004.009.00------------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTGTT.....................................................................189.000.006.002.001.00-----------------------------------------------------
..................................................................................................................................................................AATCACATTGCCATGGATT.....................................................................195.000.00-------------------1.00-1.00------------------------1.00-1.00----1.00--
...................................................................................................................................................................ATCACATTGCCATGTTTTT....................................................................192.000.00---------2.00----------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTCG..................................................................212.000.00---------------1.00-1.00--------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTCTT.....................................................................182.000.00------1.00-------------------------1.00-----------------------
...................................................................................................................................................................ATCACATTGCCATGTAAA.....................................................................182.000.001.00-------------1.00-----------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTATAA....................................................................192.000.00--1.00-1.00---------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTTC..................................................................212.000.00---1.00-----------------------------------1.00----------------
...................................................................................................................................................................ATCACATTGCCATGTCAAC....................................................................191.000.00----1.00---------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTAAAA....................................................................191.000.001.00-------------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTCT..................................................................211.000.00-------------------------------------1.00------------------
...............................................................................................................................................................................................................ATATTATTTATTTATATATTTG.....................221.000.00-----------1.00--------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTCC..................................................................211.000.00--------------------------1.00-----------------------------
...................................................................................................................................................................ATCACATTGCCATGTCCAC....................................................................191.000.00------1.00-------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTCA..................................................................211.000.00---------------1.00----------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTAGAG....................................................................191.000.001.00-------------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTACAG....................................................................191.000.00----------------------------------1.00---------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTAA...................................................................201.000.00------------------------------------------------------1.00-
...................................................................................................................................................................ATCACATTGCCATGTATG.....................................................................181.000.00----1.00---------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTATTC....................................................................191.000.00--1.00-----------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTCTTC...................................................................201.000.00--1.00-----------------------------------------------------
....................................................................................................................................................................................................................ATTTATTTATATATATATATATATAACAG.........291.000.00--------1.00-----------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTATA..................................................................211.000.00---1.00----------------------------------------------------
...........................................................................TTGCTTTCTTTTTGGTTGATCGG........................................................................................................................................................231.000.00-----------------------------------------1.00--------------
..................................................................................................................................................................AATCACATTGCCATGTCT......................................................................181.000.00----1.00---------------------------------------------------
...........................................................................................................................................................................................................CTATATATTATTTATTTTTG...........................201.000.00--------1.00-----------------------------------------------
.............................................................................................................................................................................................ACTTTTCTCCTATTCAAG...........................................181.000.00-------1.00------------------------------------------------
...........................AAGTTTGAGGAATTTATGATGAGGC......................................................................................................................................................................................................251.000.00------------------1.00-------------------------------------
.................................................................................................................................................................................................................ATTATTTATTTATATATATTTG...................221.000.00--------1.00-----------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTATTA...................................................................201.000.00----------------------1.00---------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTC....................................................................191.000.00--------------------------------------1.00-----------------
...................................................................................................................................................................ATCACATTGCCATGTGTA.....................................................................181.000.001.00-------------------------------------------------------
....................................................................................................................................................................................................................ATTTATTTATATATATATATATATATG...........271.000.00-----------1.00--------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTT.....................................................................181.000.00-------------1.00------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTGTAA....................................................................191.000.00-1.00------------------------------------------------------
............................................................................TGCTTTCTTTTTGGTTCAGG..........................................................................................................................................................201.000.00-------------------------------------------------1.00------
.......................................................................................................................................................................................................................TATTTATATATATATATATATAAG...........241.000.00----------------1.00---------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTAT......................................................................171.000.00---------------------------------------------1.00----------
........................................................................................................................................................................................................................ATTTATATATATATATATATATACATG.......271.000.00----------------1.00---------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTGTGT....................................................................191.000.001.00-------------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTATC.....................................................................181.000.00------1.00-------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTA...................................................................201.000.00-------------------------------------------1.00------------
..................................................................................................................................................................AATCACATTGCCATGGACT.....................................................................191.000.00----------------------------------------1.00---------------
..................................................................................................................................................................AATCACATTGCCATGGAAA.....................................................................191.000.00--1.00-----------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTATGG....................................................................191.000.00--1.00-----------------------------------------------------
...................................................................................................................................................................ATCACATTGCCATGTTTTA....................................................................191.000.00------------------------------------------1.00-------------
...................................................................................................................................................................ATCACATTGCCATGTTTTTC...................................................................201.000.00--------------------------------------------1.00-----------
.........................................................................................................................GTTAGATATGATAGAC.................................................................................................................161.000.00---------------------------------1.00----------------------
...................................................................................................................................................................ATCACATTGCCATGTCAA.....................................................................181.000.00----1.00---------------------------------------------------
........................TAAAAGTTTGAGGAATTTATGATGAGGTA.....................................................................................................................................................................................................2920.500.50------------------0.50-------------------------------------
........................................................................................................................TGTTAGATATGATAGAAGACT.............................................................................................................2130.330.33-------------------------------------------------------0.33

Antisense strand
CGGTCCAGCCTTAACCTTACCAGTTAAAAGTTTGAGGAATTTATGATGAGGTAAAGTACAACCTTGAAATGTAGATTGCTTTCTTTTTGGTTGAGAAGCAGAGTTTACCACTAGGCCACTTGTTAGATATGATAGAAGACTATGAGGAAAGATGCATCTAATAATCACATTGCCATGTTTGGGGACCCAACTTTTCTCCTATTCTATATATTATTTATTTATATATATATATATATATAGAAAGAATATG
.......................................................................(((((..((((((((.(((((.....((..(((.....)))..))...((((((....))))))..))))).))))))))....))))).........((.(((....))).)).................................................................
......................................................................71.................................................................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR040042(GSM532927)
G428N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577744(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532875(GSM532875)
G547N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.........................................................................................................TACCACTAGGCCACTGAA............................................................................................................................... 182.000.00-------2.00------------------------------------------------
............................................................................................................................................................................................................................ATATATATATATATATATAGACTAG..... 251.000.00-----------1.00--------------------------------------------
.....................................................................................................................................................................................................................TTTATTTATATATATATATATACG............. 241.000.00------------------------------------1.00-------------------
..................................................................................................................................................................................................TCTCCTATTCTATATTGGA..................................... 191.000.00------------------------------1.00-------------------------