ID: uc001ytf.1_intron_1_0_chr15_20488913_f
GENE: CHEK2P2(2)
chr15:20488863-20489457+


(1)
AGO1.ip
(2)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(4)
BREAST
(19)
CELL-LINE
(3)
CERVIX
(2)
HEART
(2)
HELA
(1)
LIVER
(2)
OTHER
(15)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TATAACCGTGCTGTGGACTGCTGGAGTTTAGGAGTTATTCTTTTTATCTGGTAAGAAATATTTTCATTGCTTCACAGACTGGTAGGAGGTGATTAGATGAAGTCACAAATGTGTCTTGCTCTGTTGTCCAGGCTGGCATGCAGTGGCTTGATCTTGGCTAACTGTAGCCTCTGCCTTCTGGGTCAAGTGATCCTCCCATCTCAGCCTCCTGAGTAGCTGGGACTACATGCGCACACCACCATGCCCAGCTAATTTTTCTATTTTTTGTAGTGATGGGGTTTTGCCATGTTGCTCACGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCATTGTGCCCAGCCTAGCTCACTTTTTGACCATTGATTTAAAGAAAAATCTGACTTTTCATTATGCTGAAAAAGAAATCTTTATATCTGAATGCCACTGAGAATGCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTGGGTATCCACCTTTCTCTGAGCACAGGACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACACAA
..........................................................................................................................................................................................................................................................................................................................((((((.((((((((...((((.((....))..)).)).)))))))).....))))))...............................................................................................................................................................................................................................
..........................................................................................................................................................................................................................................................................................................................315............................................................378.......................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR343337SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................................................................................................................................................................AAGTGATCCTCCTGCCTCGGCGTCG...........................................................................................................................................................................................................................................................255.000.004.001.00-----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCGTCG...........................................................................................................................................................................................................................................................244.000.00-4.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................GATTACAAGCATGAGCATC.............................................................................................................................................................................................................................193.000.00--3.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................TGAACTCCTGGGCTCAAGTGATCCCGCC.......................................................................................................................................................................................................................................................................282.000.00-2.00-----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TGGGATTACAAGCATGAGCCAT.............................................................................................................................................................................................................................2202.002.00-----------------2.00-------------------------------------------
....................................................................................................................................................................................................................................GCGCACACCACCATGCCCAGCTACTCT....................................................................................................................................................................................................................................................................................................................................................272.000.00-----2.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCCCTC...........................................................................................................................................................................................................................................................242.000.002.00------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................ATCCTCCTGCCTCGGCCTCCCAAAGTGCCGAG...............................................................................................................................................................................................................................................322.000.002.00------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................TTGAACTCCTGGGCTCAAGTGATCCTCCTGAGG...................................................................................................................................................................................................................................................................331.000.00-----------------------1.00-------------------------------------
...........TGTGGACTGCTGGAGTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------1.00----------------------
.................................................................................................................TCTTGCTCTGTTGTCCAGGCGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00------------------------------------------------------------
..............................................................................................................................TCCAGGCTGGCATGCAGTGGCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00------------1.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTGAGCACAGCGT..........................................181.000.00---------------------------------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCGACC...........................................................................................................................................................................................................................................................241.000.00-1.00-----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................GGTCTTGAACTCCTGGGCTCACGTT...............................................................................................................................................................................................................................................................................251.000.00--------1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCGGCG...........................................................................................................................................................................................................................................................241.000.001.00------------------------------------------------------------
.................................................................................................................................AGGCTGGCATGCAGTGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTTCCTTTCTCCTG............................................................................................201.000.00-------------------------1.00-----------------------------------
........................................................................................................................................................................................................................................................................................................................................TCCTGCCTCGGCCTCCCACTTA.....................................................................................................................................................................................................................................................221.000.00----------------------------------------1.00--------------------
.............................................................................................................................................................................................ATCCTCCCATCTCAGCCTCCTGAGTAGCGGGG......................................................................................................................................................................................................................................................................................................................................................................................321.000.001.00------------------------------------------------------------
................................................................................................................................................................................................CTCCCATCTCAGCCTAAA.................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------1.00----------------------------------------
..................................................................................................................................................................................................................................ATGCGCACACCACCATGCCCGGC..........................................................................................................................................................................................................................................................................................................................................................231.000.001.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCCTGAG..........................................................................................................................................................................................................................................................251.000.001.00------------------------------------------------------------
.......................................................................................................................................................................................................................................CACACCACCATGCCCAGCTA........................................................................................................................................................................................................................................................................................................................................................2001.001.00-----------------------------------------1.00-------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGAGCACAGGACTCAAGTGTC.................................2511.001.00---------1.00---------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................ATCCTCCTGCCTCGGCCTGAA..........................................................................................................................................................................................................................................................211.000.00-------------------------------1.00-----------------------------
....................................................................................................................................................................................................................................................................TTTTTTGTAGTGATGGGGTTTGCC.......................................................................................................................................................................................................................................................................................................................241.000.001.00------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................CTGGTCTTGAACTCCTGGGCTCACGTT...............................................................................................................................................................................................................................................................................271.000.00--------1.00----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGATTTCTTTTCCTTGGTT...............................................................................................221.000.00-------------------------------------------------1.00-----------
....ACCGTGCTGTGGACTGCTGGAGTTCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00-1.00-----------------------------------------------------------
.............................................................................................................................................................................................ATCCTCCCATCTCAGCCAGGG.................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................CTCCTGCCTCGGCCTCCCACTTC.....................................................................................................................................................................................................................................................231.000.00------------------------1.00------------------------------------
................ACTGCTGGAGTTTAGGAGTTATTCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-----1.00-------------------------------------------------------
......................................................................................................................................................................................................................................................................................................ACGCTGGTCTTGAACTCCGGAC.......................................................................................................................................................................................................................................................................................221.000.001.00------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................TCAAGTGATCCTCCTGCCTCGGCCGCC...........................................................................................................................................................................................................................................................271.000.001.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TGGGATTACAAGCATGAGCCAAAAT..........................................................................................................................................................................................................................251.000.00--------------------------1.00----------------------------------
..............................................................................................................................TCCAGGCTGGCATGCAGTGGCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00------------1.00------------------------------------------------
...................................................................................................................TTGCTCTGTTGTCCAGGCTGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CTGGGATTACAAGCATGAGCAAAA............................................................................................................................................................................................................................241.000.00---------------------------------1.00---------------------------
................................................................................................................................................................................................................................................................................................................................AGTGATCCTCCTGCCTCGGCCTCCCACG.......................................................................................................................................................................................................................................................281.000.00-1.00-----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TGGGCTCAAGTGATCCTCCTGCAAT..................................................................................................................................................................................................................................................................251.000.00------------------------------------------1.00------------------
........................................................................................................................................................................................................................................................................................................................TGGGCTCAAGTGATCCTCCTGAAA...................................................................................................................................................................................................................................................................241.000.00-------------------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................GTGATCCTCCTGCCTCGGCGTCG...........................................................................................................................................................................................................................................................231.000.001.00------------------------------------------------------------
........................................................................................................................................................................................AAGTGATCCTCCCATCTCAGCCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................291.000.001.00------------------------------------------------------------
................................................................................................................................................................ACTGTAGCCTCTGCCTTCTGGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.001.00------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TGATCCTCCTGCCTCGGCGTCG...........................................................................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------------------
..............................................................................................................................TCCAGGCTGGCATGCAGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2101.001.00---------------------------------------1.00---------------------
.......................................................................................................................................................................................................................................CACACCACCATGCCCAGCTAATTTTTCAG...............................................................................................................................................................................................................................................................................................................................................291.000.00-----1.00-------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TGGGCTCAAGTGATCCTCCTGCGA...................................................................................................................................................................................................................................................................241.000.00------------------1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................ACGCTGGTCTTGAACTCCGGGC.......................................................................................................................................................................................................................................................................................221.000.001.00------------------------------------------------------------
............................................................................................................................................CAGTGGCTTGATCTTGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------1.00-----------------------------------------------
.................................................................................................................................................................................................................TGAGTAGCTGGGACTACATGCCATG.........................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00-----------------------------------------------------------
..................................................................................................................................................................................................................................................................TATTTTTTGTAGTGATGGGGTTTTTTC......................................................................................................................................................................................................................................................................................................................271.000.001.00------------------------------------------------------------
.........................................................................................................................................................................................................................................CACCACCATGCCCAGCTAATTCTCG.................................................................................................................................................................................................................................................................................................................................................251.000.00-----------------------------------------------------1.00-------
....................................................................................................................................................................................................................................GCGCACACCACCATGCCCAGCTAATTACT..................................................................................................................................................................................................................................................................................................................................................291.000.00-----1.00-------------------------------------------------------
........................................................................................................................CTGTTGTCCAGGCTGGCATGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--------------------1.00----------------------------------------
...........TGTGGACTGCTGGAGGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00-----------------------------------------
................................................................................................................................................................................................................................ACATGCGCACACCACCATGCCCGGC..........................................................................................................................................................................................................................................................................................................................................................251.000.001.00------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAATCTGACCGTC......................................................................................................................................................................191.000.00------------------------------1.00------------------------------
.....................................................................................................................GCTCTGTTGTCCAGGCTGGGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00------------------------------------------------1.00------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTCTCTCTCTACCGTC....................................................................................191.000.00--------1.00----------------------------------------------------
.......................................................................................................................................................................................................................GCTGGGACTACATGCTAG..........................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................TGATCCTCCTGCCTCGGCCTCCCACC.......................................................................................................................................................................................................................................................261.000.00-1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTTCCTTTCTCTCTCATG........................................................................................241.000.00--------------------------------------------------1.00----------
.............TGGACTGCTGGAGTTTAGGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.001.00------------------1.00------------------------------------------
........................................................................................................................................................................................................................................................................................................................TGGGCTCAAGTGATCCTCCTGAAGA..................................................................................................................................................................................................................................................................251.000.00---------------------------------------------------1.00---------
....................................................................................................................................................................................................................................................................TTTTTTGTAGTGATGGGGGGTC.........................................................................................................................................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------------------
...................................................................................................................................................................................................................AGTAGCTGGGACTACATTCTT...........................................................................................................................................................................................................................................................................................................................................................................211.000.00-1.00-----------------------------------------------------------
........................AGTTTAGGAGTTATTCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.500.50------------------------------------------------------------
................................................................................................................................................................................................................................................................................................TTGCTCACGCTGGTCTTGAACTCCTGGGC......................................................................................................................................................................................................................................................................................2920.500.50-0.50-----------------------------------------------------------
.............TGGACTGCTGGAGTTTAGGAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50-----------------------0.50-------------------------------------
.......GTGCTGTGGACTGCTGGAGTTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.500.50---------------------0.50---------------------------------------
............GTGGACTGCTGGAGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50----------------------0.50--------------------------------------
..TAACCGTGCTGTGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50------------------------------------------------------0.50------
.............TGGACTGCTGGAGTTTAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50----------------------------------------------------0.50--------
........TGCTGTGGACTGCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----------------------------------------------------0.50--------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATATCTGAATGCCACTGAGAATGC......................................................................................................................2930.330.33-------------------------------------------------------0.33-----
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATGCCACTGAGAATGCCACTT.................................................................................................................2630.330.33---------0.33---------------------------------------------------
......................................................................................................................................................................................................................AGCTGGGACTACATGCGCACACCACCATG................................................................................................................................................................................................................................................................................................................................................................2930.330.330.33------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATGCCACTGAGAATGCCAC...................................................................................................................2430.330.33---------0.33---------------------------------------------------
.................................GTTATTCTTTTTATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1740.250.25--------------------------------------------------------0.25----
...................................................................................................................................................................................................................AGTAGCTGGGACTACATGCGCACACCACC...................................................................................................................................................................................................................................................................................................................................................................2990.220.220.22------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................CTCACGCTGGTCTTGAACTCCTG.........................................................................................................................................................................................................................................................................................2370.140.14----------------------------------------------------------0.14--
........................................................................................................................................................CTTGGCTAACTGTAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1780.120.12-----------------------------------------------------------0.12-
.........................................................................ACAGACTGGTAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.120.12------------------------------------------------------------0.12
...................................................................................................................................................................................................................AGTAGCTGGGACTACATGCGCACACCACCA..................................................................................................................................................................................................................................................................................................................................................................3090.110.110.11------------------------------------------------------------

Antisense strand
TATAACCGTGCTGTGGACTGCTGGAGTTTAGGAGTTATTCTTTTTATCTGGTAAGAAATATTTTCATTGCTTCACAGACTGGTAGGAGGTGATTAGATGAAGTCACAAATGTGTCTTGCTCTGTTGTCCAGGCTGGCATGCAGTGGCTTGATCTTGGCTAACTGTAGCCTCTGCCTTCTGGGTCAAGTGATCCTCCCATCTCAGCCTCCTGAGTAGCTGGGACTACATGCGCACACCACCATGCCCAGCTAATTTTTCTATTTTTTGTAGTGATGGGGTTTTGCCATGTTGCTCACGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCATTGTGCCCAGCCTAGCTCACTTTTTGACCATTGATTTAAAGAAAAATCTGACTTTTCATTATGCTGAAAAAGAAATCTTTATATCTGAATGCCACTGAGAATGCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTGGGTATCCACCTTTCTCTGAGCACAGGACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACACAA
..........................................................................................................................................................................................................................................................................................................................((((((.((((((((...((((.((....))..)).)).)))))))).....))))))...............................................................................................................................................................................................................................
..........................................................................................................................................................................................................................................................................................................................315............................................................378.......................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR343337SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................TCATTGCTTCACAGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1717.000.00--17.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCCG................................................................................................. 186.000.00-------2.00---1.00----------------------1.00---------1.00-1.00--------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCCGA................................................................................................ 196.000.00-------2.00------2.00-2.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTTCTG................................................................................................ 195.000.00---5.00---------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCAGA................................................................................................ 194.000.00----4.00--------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATTTCTTTTCCTTAAGA............................................................................................... 214.000.00------4.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................CCTGGGCTCAAGTGATCCTCCTTTA.................................................................................................................................................................................................................................................................... 254.000.00---4.00---------------------------------------------------------
.........................................................................................................................................................................................AGTGATCCTCCCATCTCAGCCTCCTCG............................................................................................................................................................................................................................................................................................................................................................................................... 273.000.003.00------------------------------------------------------------
....................................................................................................................................................................................................................................GCGCACACCACCATGCCCAGCTGCG...................................................................................................................................................................................................................................................................................................................................................... 252.000.002.00------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................CCTGGGCTCAAGTGATCCTCCTTTAT................................................................................................................................................................................................................................................................... 262.000.00----------2.00--------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................TCCTGCCTCGGCCTCCCAAAGTGCGG................................................................................................................................................................................................................................................. 262.000.00-1.00-------------------------1.00---------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTTCAGA............................................................................................... 202.000.00-----------1.00-------------------------------1.00-----------------
.................................................................................................................................................................................CTGGGTCAAGTGATCCTCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATTTCTTTTCCTTCAG................................................................................................ 201.000.00------------------------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCAGT................................................................................................ 191.000.00----1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CCTCCTGCCTCGGCCTCCCATCGC..................................................................................................................................................................................................................................................... 241.000.00-1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................GCTGGGACTACATGCGCACACA...................................................................................................................................................................................................................................................................................................................................................................... 221.000.00----------1.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TGATCCTCCTGCCTCGGCCTGGTG......................................................................................................................................................................................................................................................... 241.000.00-1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................CGCTGGTCTTGAACTCCTGGGCTCAGGCA............................................................................................................................................................................................................................................................................... 291.000.001.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCACAGGACTTTT...................................... 181.000.00---------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TCCTGGGCTCAAGTGATCCTCCTCGCC................................................................................................................................................................................................................................................................... 271.000.001.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................ACTCCTGGGCTCAAGTGATCCTCAGG...................................................................................................................................................................................................................................................................... 261.000.001.00------------------------------------------------------------
.....................................................................................................................................................................................................................................CGCACACCACCATGCCCAGCTAATTCCG.................................................................................................................................................................................................................................................................................................................................................. 281.000.001.00------------------------------------------------------------
...........................................................................................................................................................................................................................................CCACCATGCCCAGCTAATTGAAT................................................................................................................................................................................................................................................................................................................................................. 231.000.00-----------------------------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCACAGGACTATT...................................... 181.000.00---------------1.00---------------------------------------------
..........................................................................................................................................................................................GTGATCCTCCCATCTCAGCCTCCTGAGTAGTG......................................................................................................................................................................................................................................................................................................................................................................................... 321.000.00-1.00-----------------------------------------------------------
.............................................................................................................................................................................................ATCCTCCCATCTCAGCCTCCTGAGTAGCTGGCC..................................................................................................................................................................................................................................................................................................................................................................................... 331.000.00-1.00-----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCAGG................................................................................................ 191.000.00-------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TCCTGGGCTCAAGTGATCCTCCTGCCTTCG................................................................................................................................................................................................................................................................ 301.000.00-1.00-----------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCCTCCTGCCTCGGCCTCCCAAGG...................................................................................................................................................................................................................................................... 241.000.00-1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................TGCGCACACCACCATGCCCAGCTCCTG..................................................................................................................................................................................................................................................................................................................................................... 271.000.00-1.00-----------------------------------------------------------
.....................................................................................................................................................................................................................................CGCACACCACCATGCCCAGCTTCCG..................................................................................................................................................................................................................................................................................................................................................... 251.000.00-1.00-----------------------------------------------------------
......................................................................................................................................................................TGACCCAGAAGGCAGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00-----------------------------------1.00-------------------------
..................................................................................................................................................................................................CCCATCTCAGCCTCCTCGGT............................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00----------------------1.00--------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTCAG................................................................................................. 181.000.00----1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTTCCTTCAG................................................................................................ 191.000.00-----------------------------------------------1.00-------------
..............................................................................................................................................................................................................................................................................................TGTTGCTCACGCTGGTCTTGAAG.............................................................................................................................................................................................................................................................................................. 231.000.00-1.00-----------------------------------------------------------
..................................................................................................................................................................................................................................................GCCCAGCTAATTTTTCTACCG............................................................................................................................................................................................................................................................................................................................................ 211.000.00---------------------1.00---------------------------------------
.................................................................................................................................................................................AGGCTGAGATGGGAGGATCACTTGACCCAG.................................................................................................................................................................................................................................................................................................................................................................................................... 3011.001.00-1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................CCTCCCAAAGTGCTGGGATTACAAGAC..................................................................................................................................................................................................................................... 271.000.00--------------------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................TCCTGCCTCGGCCTCCCAACTGC.................................................................................................................................................................................................................................................... 231.000.00-1.00-----------------------------------------------------------
..........................................................................................................................................................................................GTGATCCTCCCATCTCAGCCTCCTACG.............................................................................................................................................................................................................................................................................................................................................................................................. 271.000.001.00------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................CCTGGGCTCAAGTGATCCTCCTGCCTCGCAC.............................................................................................................................................................................................................................................................. 311.000.001.00------------------------------------------------------------
.....................................................................................................TGGACAACAGAGCAAGACACATTTGTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2930.670.67---------0.67---------------------------------------------------
............................................................................................................TGGACAACAGAGCAAGACACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2230.330.33---------0.33---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................CAATGGTCAAAAAGTGAGCTAGGCTGGGCAC............................................................................................................................................................................................. 3130.330.33---------0.33---------------------------------------------------
.................................................................................................................................................................................................................TGGTGTGCGCATGTAGTCCCAGCTACTCA..................................................................................................................................................................................................................................................................................................................................................................... 2940.250.25---------------------------------------------------------0.25---