ID: uc001yqf.2_intron_11_0_chr14_105615196_r
GENE: (6)
chr14:105615146-105615323-


(1)
AGO2.ip
(1)
BRAIN
(6)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(2)
HEART
(4)
HELA
(1)
LIVER
(3)
OTHER
(18)
SKIN
(1)
UTERUS

Sense strand
CTTTTCCTGCATCTGTGACAGTGGCTTTACTGGCACCTACTGCCATGAGAGTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCCCGCTCGCCTCTGCAGACATTGACGACTGCCTGGGCCAGCCCTGCCGCAATGGGGGCACATGCATC
...................................................................(((((..((((((((((.((((((((((...))))..)))))))))))).)))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCCCGCTCGCCTCTGCAG..................................................78116.0016.0016.00---------------------------------------------
...................................................TGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCCCTTT.............................................................666.000.00-6.00--------------------------------------------
.......................................................................................................TGGCTCACCCCGCTCGCCTCT......................................................2116.006.00---------1.00--1.00---1.001.00---------------1.00----1.00-------
..................................................GTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACC..................................................................6215.005.005.00---------------------------------------------
..................................................GTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTC.....................................................................5913.003.00-3.00--------------------------------------------
.......................................................................................................TGGCTCACCCCGCTCGCCTCTAAT...................................................2413.006.00--3.00-------------------------------------------
..................................................GTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCC.................................................................6312.002.002.00---------------------------------------------
.....................................................................................TGGGCTGGCCTGAGGCCCTGGCTCACC..................................................................2712.002.00----2.00-----------------------------------------
...........TCTGTGACAGTGGCTTTAC....................................................................................................................................................1912.002.00-----------------------------1.00-------1.00--------
..................................................GTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCT.................................................................6312.005.00-2.00--------------------------------------------
..........................................................................................TGGCCTGAGGCCCTGGC.......................................................................1731.671.67---0.33------0.33--------------------------------0.670.33-
...................................................................GCGGGCTGGTGGTGGGGCTGGG.........................................................................................2211.001.00-----------------------------------1.00----------
......................................................................................GGGCTGGCCTGAGGCCCAGT........................................................................201.000.00------------------------------------------1.00---
.......................................................................................................TGGCTCACCCCGCTCGCCTCTGT....................................................2311.001.00---------------------------------------1.00------
......................................................................................................................................ACGACTGCCTGGGCCAAGC.........................191.000.00--------1.00-------------------------------------
.................................CACCTACTGCCATGAGAGTGA............................................................................................................................2111.001.00-----1.00----------------------------------------
.....................................................AGTGGCCACGAACGGCGGGCTGG......................................................................................................2311.001.00------------------------------1.00---------------
.......................................................................................................TGGCTCACCCCGCTCGCCT........................................................1911.001.00-----------------------------------------1.00----
.......................................................................................................TGGCTCACCCCGCTCGCCTCTG.....................................................2211.001.00-----------------------1.00----------------------
...........................................................CACGAACGGCGGGCTGGTGGGG.................................................................................................221.000.00---------------------------1.00------------------
..............................................................GAACGGCGGGCTGGTTCCA.................................................................................................191.000.00--------------------------1.00-------------------
.............................................................CGAACGGCGGGCTGGTGGTG.................................................................................................2011.001.00----------------------------------------1.00-----
...................................................TGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGC.............................................................................................3411.001.00--------------1.00-------------------------------
.......................................................................................................TGGCTCACCCCGCTCGCCTCTGA....................................................2311.001.00---1.00------------------------------------------
............................................................................TGGTGGGGCTGGGCTGGC....................................................................................1821.001.00----------1.00-----------------------------------
.......................................................................GCTGGTGGTGGGGCTGGGCTGGCCTGAGG..............................................................................2911.001.00------------------------1.00---------------------
.......................................................................................................TGGCTCACCCCGCTCGCCTCTT.....................................................2211.006.00-------------------------1.00--------------------
....................................................GAGTGGCCACGAACGGCGGGC.........................................................................................................2111.001.00---------------------1.00------------------------
................................................................ACGGCGGGCTGGTGGTGATTT.............................................................................................211.000.00---1.00------------------------------------------
................................................................ACGGCGGGCTGGTGGTGGGGCTGG..........................................................................................2411.001.00-----1.00----------------------------------------
....................................................................CGGGCTGGTGGTGGGGCTGGG.........................................................................................2111.001.00-------------------1.00--------------------------
.......................................................................................................TGGCTCACCCCGCTCGCCTA.......................................................2011.001.00------------------1.00---------------------------
................................................................ACGGCGGGCTGGTGGTGGGGCTGGTT........................................................................................2611.001.00-------1.00--------------------------------------
.....................................................................................................................................GACGACTGCCTGGGCCAGCCCTGCCGC..................2711.001.00--------1.00-------------------------------------
...................................................................GCGGGCTGGTGGTGGGGCTGGGCAA......................................................................................251.000.00----------------------------------1.00-----------
................................................................ACGGCGGGCTGGTGGGGG................................................................................................1811.001.00-------------------------------1.00--------------
.....................................................AGTGGCCACGAACGGCGGGCTGGTGGTGGGGG.............................................................................................321.000.00------------------------------------1.00---------
................................................................ACGGCGGGCTGGTGGTGGAG..............................................................................................201.000.00------1.00---------------------------------------
...............................................................AACGGCGGGCTGGTGGTG.................................................................................................1811.001.00--------------------------------1.00-------------
.................................................................................................................................CATTGACGACTGCCTGG................................1711.001.00---------------1.00------------------------------
....................................................................CGGGCTGGTGGTGGGGCTGGGCTG......................................................................................2411.001.00----------------------1.00-----------------------
.................ACAGTGGCTTTACTGGTGCC.............................................................................................................................................201.000.00-----------1.00----------------------------------
......................................................................................................CTGGCTCACCCCGCTCGCCTCT......................................................2211.001.00----------------------------1.00-----------------
.....................................................AGTGGCCACGAACGGCGGGC.........................................................................................................2011.001.00-------------1.00--------------------------------
................................................................ACGGCGGGCTGGTGG...................................................................................................1511.001.00------1.00---------------------------------------
...............................................................AACGGCGGGCTGGTGGTGGGGCTG...........................................................................................2411.001.00-------1.00--------------------------------------
.......................................................TGGCCACGAACGGCGGGCTGGTGG...................................................................................................2411.001.00--------------------1.00-------------------------
.....................................................................................TGGGCTGGCCTGAGGC.............................................................................1690.110.11---------------------------------------------0.11

Antisense strand
CTTTTCCTGCATCTGTGACAGTGGCTTTACTGGCACCTACTGCCATGAGAGTGAGTGGCCACGAACGGCGGGCTGGTGGTGGGGCTGGGCTGGCCTGAGGCCCTGGCTCACCCCGCTCGCCTCTGCAGACATTGACGACTGCCTGGGCCAGCCCTGCCGCAATGGGGGCACATGCATC
...................................................................(((((..((((((((((.((((((((((...))))..)))))))))))).)))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................CCACCAGCCCGCCGTTC................................................................................................... 1711.001.00---------1.00------------------------------------