ID: uc001yoy.3_intron_2_0_chr14_105169558_f
GENE: (3)
chr14:105169508-105169681+


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(18)
BREAST 		(28)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(8)
HELA 		(5)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ACTCTCCCGAGGGCCACGTGCTGACCCTGGACGCCCTGGACCACTACAAGGTGGGCGGCAGGGCCTGGGCCTGGGCACATGGGGCTCCCTGCCTGGGTGTGCCCTGACCCCGCCCTCCCCACAGACGGTGTGCAGCCAGCAGTACCGCTTCAGCATTGTCATGAACGAGCTCTC
..................................................(((((...((((((....(((..((((...(((...)))))))..)))..))))))..))))).............................................................
..................................................51............................................................113...........................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040023(GSM532908)
G575T. (cervix)		GSM532882(GSM532882)
G696T. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................TGCCTGGGTGTGCCCTGACC.................................................................20127.0027.006.002.002.00--2.007.001.00----1.00-----1.00-----1.00-1.00-----------------1.00-----------1.00--------1.00------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAGT.................................................21118.007.001.003.00-1.00-----------1.001.00-------1.00-----1.00-------1.001.001.00--1.00----1.00-----------------1.00-----1.00-----1.00----1.00------------
........................................................................................................TGACCCCGCCCTCCCCACAGA.................................................21112.0012.002.00-1.001.00------2.00-----1.00--------------1.00-----1.00-------1.00---------------------1.00--------1.00-------------------
.........................................................................................TGCCTGGGTGTGCCCTGACA.................................................................20110.001.00-1.001.00----2.00-1.00--1.00-----1.00--1.00------1.00-------------------------------1.00-----------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAG..................................................2017.007.002.00---------------1.00---1.00----------1.00-1.00------------------------1.00-------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCACATGGGGCTCCCTGCCTGGGTGTGCCCTGACCCCTTTT...........................................................656.000.00-----------5.00--------------------------------------------------------------------1.00---------------
........................................................................................CTGCCTGGGTGTGCCCTGACC.................................................................2115.005.001.00-------1.00---1.00----------1.00----------------------------------------1.00-------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCACA...............................................................................................2915.005.00---2.00----------1.00--2.00------------------------------------------------------------------------------
.........................................................GCAGGGCCTGGGCCTGGGCACA...............................................................................................2214.004.00----4.00-------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGTGTG................................................................214.000.00-1.00-----------------3.00----------------------------------------------------------------------------
.......................................................................................................CTGACCCCGCCCTCCCCACAGT.................................................2213.002.00---------1.00--------------------------------------------1.00-------------1.00---------------------------
........................................................................................CTGCCTGGGTGTGCCCTGA...................................................................1913.003.001.00----1.00--------------------------------------------------------------------------------1.00---------
........................................................................................................TGACCCCGCCCTCCCCACA...................................................1913.003.00---------------2.00---------------------------------1.00----------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCGC.............................................................2413.003.001.00-2.00---------------------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGGCAT................................................................................................273.000.001.00-1.001.00--------------------------------------------------------------------------------------------
.................................................................TGGGCCTGGGCACATGGGGCTCCCTGCC.................................................................................2813.003.00-1.00---------------------2.00------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCGCA............................................................2512.003.00--------------2.00---------------------------------------------------------------------------------
.......................................................................................................CTGACCCCGCCCTCCCCACAG..................................................2112.002.001.00--------------------------------1.00--------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGGCACA...............................................................................................2812.002.00----2.00-------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGCC..................................................................192.000.00------------------------------------1.00---------------------------------1.00-------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCC................................................................2112.002.00--------------------------------------1.00-----------------------1.00---------------------------------
.......................................................................................................CTGACCCCGCCCTCCCCACAGTT................................................2312.002.00--------1.00--------------------------------------------------------------------1.00------------------
.......................................................................................................CTGACCCCGCCCTCCCCACAGA.................................................2212.002.00--------2.00---------------------------------------------------------------------------------------
.......................................................................................................CTGACCCCGCCCTCCCCACAGC.................................................2212.002.00--1.00-----------------1.00---------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCATA...............................................................................................2912.001.00---2.00--------------------------------------------------------------------------------------------
......................GACCCTGGACGCCCTGGAC.....................................................................................................................................1912.002.00--------------------------------2.00---------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCGTA............................................................2512.001.00-------------------------2.00----------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGA...................................................................1822.002.00-0.500.50------0.50--------0.50-----------------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACA.................................................................212.000.00--1.00------------1.00--------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGG....................................................................................................2412.002.00---------------------------------------------------------------------------1.00------------1.00-------
..................................................................GGGCCTGGGCACATGGGGCTCCCTGCC.................................................................................2712.002.00-1.00--------------------1.00-------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCACATGGGGC.........................................................................................3512.002.00----------2.00-------------------------------------------------------------------------------------
.................................................................TGGGCCTGGGCACATGGGGCTCCCTGC..................................................................................2712.002.00-----------------------------------2.00------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGTTCT................................................................................................271.000.00-------------1.00----------------------------------------------------------------------------------
...............ACGTGCTGACCCTGGACGCCCTGGACCACTACA..............................................................................................................................3311.001.00-----1.00------------------------------------------------------------------------------------------
.............................................................................................TGGGTGTGCCCTGACC.................................................................1611.001.00-----------------------------------------------------1.00------------------------------------------
..................................................................GGGCCTGGGCACATGGGGC.........................................................................................1911.001.00------------------------------------1.00-----------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCATT.............................................................2411.002.00-----------------------------------------1.00------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCAT................................................................................................2811.001.00----------------------------------------------1.00-------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGTT...................................................................................................2511.001.00----------------------------------------------------------------------------------1.00-------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGTTTT................................................................................................271.000.00----------------------------------1.00-------------------------------------------------------------
.................................CCCTGGACCACTACAAG............................................................................................................................1711.001.00---------------------------------------------------------------------------------------1.00--------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCA.................................................................................................2711.001.00-------------------------------------------------------------1.00----------------------------------
...................................CTGGACCACTACAAGGTGGGCGGC...................................................................................................................2411.001.00-------1.00----------------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCACATGGGGCTCCCTGCCTGGGTGTGCCCTGACCCCGCCCTCCCCACAG..................................................7411.001.00------------------1.00-----------------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACG.................................................................211.000.00-1.00----------------------------------------------------------------------------------------------
.................GTGCTGACCCTGGACGCCCTGGACCA...................................................................................................................................2611.001.00-----------------1.00------------------------------------------------------------------------------
.........................................................GCAGGGCCTGGGCCTGAAA..................................................................................................191.000.00----1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................GCATTGTCATGAACGAGCTCTC2211.001.00------------------------------------------------------------------------------------1.00-----------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCAAT............................................................251.000.00------------------------1.00-----------------------------------------------------------------------
...............................................................CCTGGGCCTGGGCACATGGGGCTCCCTGC..................................................................................2911.001.00----------------------1.00-------------------------------------------------------------------------
................................................................................................GTGTGCCCTGACCCCGCCCTCC........................................................2211.001.00------------------------------------------------------------------------------------------1.00-----
.........................................................GCAGGGCCTGGGCCTGGGCACT...............................................................................................221.000.00----1.00-------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCGCAA...........................................................2611.003.00-------------------------------------------------------------------------------------1.00----------
........................................................................................CTGCCTGGGTGTGCCCTGACCATA..............................................................2411.005.00--------1.00---------------------------------------------------------------------------------------
.....................................................................CCTGGGCACATGGGGCTCCCTGCC.................................................................................2411.001.00---------------------------------------1.00--------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACAA................................................................2111.001.00---------------------1.00--------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGC..................................................................................................2611.001.00---------------------------------------------------------1.00--------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGTA...................................................................................................2511.001.00-----------------------------------------------1.00------------------------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAGTAA...............................................2311.007.00-1.00----------------------------------------------------------------------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAGTAT...............................................2311.007.00------------------------------------------1.00-----------------------------------------------------
.....................................................................................TCCCTGCCTGGGTGTGCCCTGA...................................................................2211.001.00---------------------------------------------------------------------1.00--------------------------
.........................................................GCAGGGCCTGGGCCTGGGAA.................................................................................................201.000.00--------------------------1.00---------------------------------------------------------------------
........................CCCTGGACGCCCTGGAC.....................................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00----------------
.............................................................................................TGGGTGTGCCCTGACCCCGCCC...........................................................2211.001.001.00-----------------------------------------------------------------------------------------------
.......................................................CGGCAGGGCCTGGGCCTGGGCAC................................................................................................2311.001.00-------1.00----------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGTGT.................................................................201.000.00---------1.00--------------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGTC...................................................................................................2511.001.00-----------------------------1.00------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACCCCAA.............................................................251.000.00------------1.00-----------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGAGT.................................................................................................2711.002.00-----------------------------------------------------------------------1.00------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACCCCGC.............................................................2511.001.00----------1.00-------------------------------------------------------------------------------------
.............................................................................................................................CGGTGTGCAGCCAGCAGTAC.............................2011.001.00---1.00--------------------------------------------------------------------------------------------
..........................CTGGACGCCCTGGACCACTACAAGACG.........................................................................................................................271.000.00-----1.00------------------------------------------------------------------------------------------
..................TGCTGACCCTGGACGCCC..........................................................................................................................................1811.001.001.00-----------------------------------------------------------------------------------------------
......................GACCCTGGACGCCCTGG.......................................................................................................................................1711.001.00-----1.00------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCG..............................................................2311.001.00-----------------------------------------------------------1.00------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCA................................................................2111.0027.00---------------------1.00--------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCACT...............................................................................................2911.001.00--------------1.00---------------------------------------------------------------------------------
.............................................................................................TGGGTGTGCCCTGACCAAT..............................................................1911.001.00---------1.00--------------------------------------------------------------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAGTAG...............................................2311.007.00-------1.00----------------------------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACCCCGCCCTC.........................................................2911.001.00-------------1.00----------------------------------------------------------------------------------
.....CCCGAGGGCCACGTGCTGACCCTGGACGCCCTG........................................................................................................................................3311.001.00-----1.00------------------------------------------------------------------------------------------
..........................................................CAGGGCCTGGGCCTGGGCACAT..............................................................................................2211.001.00---------------------------------------------------1.00--------------------------------------------
.............................................................................................TGGGTGTGCCCTGACCCCG..............................................................1911.001.00------------1.00-----------------------------------------------------------------------------------
.......................................................................TGGGCACATGGGGCTCCCTGCC.................................................................................2211.001.001.00-----------------------------------------------------------------------------------------------
............................................................GGGCCTGGGCCTGGGCACATGGGGCTCCC.....................................................................................2911.001.00-----------------1.00------------------------------------------------------------------------------
..............CACGTGCTGACCCTGGACGCCCTGGACC....................................................................................................................................2811.001.00-------------------------------------1.00----------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTG.....................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGTTC.................................................................................................2711.002.00-------------1.00----------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGA..........................................................................................................171.000.001.00-----------------------------------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGAA..................................................................2011.003.00----------------------------------------------------1.00-------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCCGA.............................................................2411.001.00---------------------------------------------------------------------------------1.00--------------
.........................................................................................TGCCTGGGTGTGCCCTGACCCAAG.............................................................2411.002.00----------------------1.00-------------------------------------------------------------------------
..................TGCTGACCCTGGACGCCCTGGACCACT.................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------1.00------
..................................................GTGGGCGGCAGGGCCTGGGC........................................................................................................2021.001.00----------------------------------------0.50--------------------------------------------------0.50----
..................................................................GGGCCTGGGCACATGGGGCTCCCTGC..................................................................................2611.001.00---------------------------------------------------------------1.00--------------------------------
..................................................................................................................................TGCAGCCAGCAGTACCGCTCC.......................211.000.00----------------------------------1.00-------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGTC..................................................................................................251.000.00-------------1.00----------------------------------------------------------------------------------
........................................................................................CTGCCTGGGTGTGCCCTGACCAGA..............................................................2411.005.001.00-----------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGAC..................................................................1911.001.00---------1.00--------------------------------------------------------------------------------------
......................................................................................................CCTGACCCCGCCCTCCCCAC....................................................2011.001.00--------1.00---------------------------------------------------------------------------------------
................................................................................................GTGTGCCCTGACCCCGCCCTCT........................................................221.000.00----------------1.00-------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCCGGT...................................................................................................241.000.00-------------1.00----------------------------------------------------------------------------------
.....................................................................................TCCCTGCCTGGGTGTGCCCTGAC..................................................................2311.001.00----1.00-------------------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCCTGGGCAC................................................................................................2811.001.00--------------------------------------------------1.00---------------------------------------------
........................................................................................................TGACCCCGCCCTCCCCACAGAA................................................2211.0012.00----------------------------1.00-------------------------------------------------------------------
...............ACGTGCTGACCCTGGACGCCCTGGAC.....................................................................................................................................2611.001.00-------------------------------------------------------1.00----------------------------------------
...................................................TGGGCGGCAGGGCCTGGGCCTGGCTCT................................................................................................271.000.00--------------------1.00---------------------------------------------------------------------------
..............................................................GCCTGGGCCTGGGCACATGGGGCTCCCTGCC.................................................................................3111.001.00--------------------------------------------------------------------------1.00---------------------
.........................................................................................TGCCTGGGTGTGCCCTGACCAG...............................................................2211.0027.00-1.00----------------------------------------------------------------------------------------------
.......................................................................................................CTGACCCCGCCCTCCCCAAAGT.................................................221.000.00------------------------------1.00-----------------------------------------------------------------
.......................................................CGGCAGGGCCTGGGCCTGGGCA.................................................................................................2211.001.00-------------------------------------------------------------------------1.00----------------------
....................................................GGGCGGCAGGGCCTGGGCCTGGT...................................................................................................231.000.00-----------------------------1.00------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGAAAA................................................................2120.502.00--0.50---------------------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGGC........................................................................................................1920.500.50--0.50---------------------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGG..........................................................................................................1740.500.500.25-0.25---------------------------------------------------------------------------------------------
..................................................GTGGGCGGCAGGGCCTGGGCG.......................................................................................................2120.501.000.50-----------------------------------------------------------------------------------------------
...............ACGTGCTGACCCTGG................................................................................................................................................1520.500.50-----0.50------------------------------------------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGAAA.................................................................2020.502.00-----------------------------------------0.50------------------------------------------------------
.........................................................................................TGCCTGGGTGTGCCCTGAGG.................................................................2020.502.000.50-----------------------------------------------------------------------------------------------
...................................................TGGGCGGCAGGGCCTGGG.........................................................................................................1830.330.330.33-----------------------------------------------------------------------------------------------
........................................................................................................TGACCCCGCCCTCCCCA.....................................................1730.330.33--------------------------------------------------------------------------------------------0.33---
..................................................GTGGGCGGCAGGGCCT............................................................................................................1640.250.25---------------------------------------------------------------------------------------------0.25--
...................................................TGGGCGGCAGGGCCTGGATA.......................................................................................................2040.250.500.25-----------------------------------------------------------------------------------------------
................CGTGCTGACCCTGGA...............................................................................................................................................1550.200.20----------------------------------------------------------------------------------------------0.20-
..............................................................................................GGGTGTGCCCTGACC.................................................................1570.140.14-----------------------------------------------------------------------------------------------0.14

Antisense strand
ACTCTCCCGAGGGCCACGTGCTGACCCTGGACGCCCTGGACCACTACAAGGTGGGCGGCAGGGCCTGGGCCTGGGCACATGGGGCTCCCTGCCTGGGTGTGCCCTGACCCCGCCCTCCCCACAGACGGTGTGCAGCCAGCAGTACCGCTTCAGCATTGTCATGAACGAGCTCTC
..................................................(((((...((((((....(((..((((...(((...)))))))..)))..))))))..))))).............................................................
..................................................51............................................................113...........................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040023(GSM532908)
G575T. (cervix)		GSM532882(GSM532882)
G696T. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................ACCCCGCCCTCCCCATT................................................... 171.000.00---------------------------1.00--------------------------------------------------------------------
...........................................................................................................GTGGGGAGGGCGGGG.................................................... 1501.001.00---------------------------1.00--------------------------------------------------------------------