ID: uc001ymz.3_intron_14_0_chr14_103958372_f.3p
GENE: (15)
chr14:103964639-103964888+


(1)
BREAST
(8)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
TATTAAAAGATCACATACTCATTTAATTACCTGTAATAATTTTACTTTTTCAACAAATGTCAGCATTTCTTTGTTCATTGGCCAGAGAAGGAACCCTGCTTTGTTTTTTTTCTTTCTCTCTGTAATTGATTAGATTTTCTGTTTAATTTGTGCGAGTTATTTTTGTTAATTTTTTTTTTTTTTTACTTAATTTCTTTTAGAAACATGTCATTCAGGTTTATCAAAAGGTAGGATTTATATATACACATTT
...................................................................................(((((((((((........)))))))))))....(((.(((...((((((((.....))))))))..))))))..............................................................................................
..................................................................................83..............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTTAATTTCTTTTAG..................................................3317.007.00--3.002.002.00---------------
..........................................................................................................................................................................TTTTTTTTTTTTTTACTTAATTTCTTTTAG..................................................3013.003.00----3.00---------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTCGG...........................................................232.000.00-2.00------------------
.......................................................................................AAGGAACCCTGCTTTGTTTTTTTCT..........................................................................................................................................252.000.002.00-------------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTCATG..........................................................242.000.00---2.00----------------
........................................................................................AGGAACCCTGCTTTGTTTTTTTTCT.........................................................................................................................................2512.002.002.00-------------------
...............................................................................GGCCAGAGAAGGAACCCTGCTTCG...................................................................................................................................................242.000.002.00-------------------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTGG.............................................................222.000.00-------2.00------------
......................................................................................................................................................................TAATTTTTTTTTTTTTTTACG...............................................................211.000.00-------1.00------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTCAGG...........................................................231.000.00----1.00---------------
...............................TGTAATAATTTTACTTTGTTC......................................................................................................................................................................................................211.000.00---------1.00----------
...........................................................................CATTGGCCAGAGAAGGAACC...........................................................................................................................................................2011.001.00---------------1.00----
......................................................................................................................................................TGCGAGTTATTTTTGTTAATTTTTTTTTTTT.....................................................................3111.001.001.00-------------------
.............................................................................................................................................................................TTTTTTTTTTTACTTAATTTCTTTTAG..................................................2711.001.00----1.00---------------
...............................................................................................................................................................................TTTTTTTTTACTTAATTTCTTTTAG..................................................2511.001.00-------1.00------------
.................................................................................................................................................................................TTTTTTTACTTAATTTCTTTTAG..................................................2311.001.00--1.00-----------------
............................................................................................ACCCTGCTTTGTTTTTTTTCTTTCTCT...................................................................................................................................2711.001.00-1.00------------------
.............................................................................................................................................................................TTTTTTTTTTTACTTAATTTCTTT.....................................................2411.001.00---1.00----------------
................................................................................................................................................................................TTTTTTTTACTTAATTTCTTACG...................................................231.000.00--1.00-----------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTTTTTACTT..............................................................3211.001.001.00-------------------
.............................................................................................................................................................................TTTTTTTTTTTACTTAATTTTTA......................................................231.000.00----------------1.00---
......................................................................................................................................................................TAATTTTTTTTTTTTTTTACGG..............................................................221.000.00---1.00----------------
.............................................................................................................................................................................................ATTTCTTTTAGAAACGA............................................171.000.00-------------------1.00
....................................................................................................................................................TGTGCGAGTTATTTTTGTTAATTTTTTTTC........................................................................301.000.001.00-------------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTCTT....................................................................261.000.001.00-------------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTCAGC..........................................................241.000.00-1.00------------------
............................................................................................................................................................................TTTTTTTTTTTTACTTAATTTAG.......................................................231.000.00--1.00-----------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTCTT...................................................................271.000.001.00-------------------
................................................................................................................................ATTAGATTTTCTGTTTAATTTGTGCGAG..............................................................................................2811.001.001.00-------------------
................................................................................................TGCTTTGTTTTTTTTCTTTCTCTCTG................................................................................................................................2611.001.00-1.00------------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTCT......................................................................241.000.001.00-------------------
....................................................................................................................................GATTTTCTGTTTAATTTAG...................................................................................................191.000.00---------1.00----------
...........................................................................................................................................................................TTTTTTTTTTTTTACTTAATTTCTTTTAG..................................................2911.001.00--1.00-----------------
...........................................................................................AACCCTGCTTTGTTTTTTTTCTTTCTCTCT.................................................................................................................................3011.001.00-----1.00--------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTCTTG..........................................................241.000.00-------1.00------------
..................................................................................................................................................................................TTTTTTACTTAATTTCTTTTAG..................................................2211.001.001.00-------------------
.....................................................................................................................................................................TTAATTTTTTTTTTTTTTTATTTG.............................................................241.000.00---1.00----------------
.....................................................................................................................................................................TTAATTTTTTTTTTTTTTTACTTTAAG..........................................................271.000.00---1.00----------------
................................................................................................................................................................................................................CATTCAGGTTTATCAAAAG.......................1911.001.00-----------------1.00--
...................................................................................................................................AGATTTTCTGTTTAATTTGTGCGAG..............................................................................................2511.001.001.00-------------------
........................................................................................AGGAACCCTGCTTTGTTTTTCT............................................................................................................................................221.000.00-1.00------------------
..........................................................................................................................................................AGTTATTTTTGTTAATTTTTTTTTTTTTTAC.................................................................311.000.001.00-------------------
......................................................................................................................................................................TAATTTTTTTTTTTTTTTACTTAATTTCTTTTA...................................................3311.001.00---1.00----------------
........................................................................................AGGAACCCTGCTTTGTTTTTTTTCC.........................................................................................................................................251.000.00-1.00------------------
..............................................................................TGGCCAGAGAAGGAACCCTGCTTTGTTTTTTTT...........................................................................................................................................3311.001.00-1.00------------------
.............................................................................TTGGCCAGAGAAGGAACCC..........................................................................................................................................................1911.001.00--------1.00-----------
.....................................................................................................................................................................TTAATTTTTTTTTTTTTTTACTTAATTTTTTT.....................................................321.000.00-----1.00--------------
.....................................................................................................................................................................................................................AGGTTTATCAAAAGGTAGGA.................2011.001.00------------1.00-------
..............................................................................TGGCCAGAGAAGGAACCCTGCTTTGTT.................................................................................................................................................2711.001.00----------1.00---------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTTAACAAG........................................................271.000.00-------1.00------------
...............................................................................................................................................................TTTTTGTTAATTTTTTTTTTTTTTCTAC...............................................................281.000.001.00-------------------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTTTAAG..........................................................251.000.00---1.00----------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTACTTAATCCAG.......................................................261.000.00----1.00---------------
............ACATACTCATTTAATTTTTG..........................................................................................................................................................................................................................201.000.00-----1.00--------------
.......................................TTTTACTTTTTCAACATTC................................................................................................................................................................................................191.000.00-----1.00--------------
..........................................................................................................................................................AGTTATTTTTGTTAATTTTTTTT.........................................................................2311.001.001.00-------------------
...................................................................................................TTTGTTTTTTTTCTTTCTGCG..................................................................................................................................211.000.001.00-------------------
....................................................................CTTTGTTCATTGGCCAGAGAA.................................................................................................................................................................2111.001.00------------------1.00-
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTACT...................................................................271.000.001.00-------------------
..................................................................................................CTTTGTTTTTTTTCTTTCTCTTTTC...............................................................................................................................251.000.00-1.00------------------
.......................................................AATGTCAGCATTTCTTTGTTCATTGGCCAGAG...................................................................................................................................................................3211.001.001.00-------------------
.............................................................................................................................................................................TTTTTTTTTTTACTTAATTTCTTTT....................................................2511.001.001.00-------------------
..................................................................................................................................................................................................................TTCAGGTTTATCAAAAG.......................1711.001.00--------------1.00-----
............................................................................ATTGGCCAGAGAAGGAACCC..........................................................................................................................................................2011.001.00--------1.00-----------
.............................................................................................................................................................TATTTTTGTTAATTTTTTTTTTTTTTTTTAC..............................................................311.000.00-1.00------------------
................................................................................................................................................................................TTTTTTTTACTTAATTTCTTTTAG..................................................2411.001.00--1.00-----------------
............................................................................................ACCCTGCTTTGTTTTTTTTCTTTCTCCCTG................................................................................................................................301.000.001.00-------------------
...............................................................................................CTGCTTTGTTTTTTTTCTTCAC.....................................................................................................................................221.000.00-1.00------------------
......................................................................................................................................................TGCGAGTTATTTTTGTTAATTTTTTTTTTTC.....................................................................311.000.001.00-------------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTTCTAC.................................................................291.000.001.00-------------------
............................................................................................................................................................................TTTTTTTTTTTTACTTAATGTCT.......................................................231.000.00-----1.00--------------
........................................................ATGTCAGCATTTCTTTGTTCATTGGCCAGAG...................................................................................................................................................................3111.001.00-1.00------------------
............................................................................................................................................................................TTTTTTTTTTTTACTTAATTTCTTTTAG..................................................2811.001.00--1.00-----------------
............................................................................................ACCCTGCTTTGTTTTTTTTCTTTCTCCCT.................................................................................................................................291.000.001.00-------------------
......................................................................................................................................................................TAATTTTTTTTTTTTTTTACTTAATTTCTTTTAG..................................................3411.001.00----1.00---------------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTTAATTTCTTCTAG..................................................331.000.00--1.00-----------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTCAGG..........................................................241.000.001.00-------------------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTTTATT..........................................................251.000.00-1.00------------------
..................................................................................................CTTTGTTTTTTTTCTTTCTCTT..................................................................................................................................221.000.00-----1.00--------------
.......................................................................................................................................................................AATTTTTTTTTTTTTTTACTCG.............................................................221.000.00----1.00---------------
...................................................................................................................................................................TGTTAATTTTTTTTTTTGTT...................................................................201.000.00--1.00-----------------
..............................................................................................................................................................ATTTTTGTTAATTTTTTTTTTTTACT..................................................................261.000.001.00-------------------
........................................................................................AGGAACCCTGCTTTGTTTTTTTCCT.........................................................................................................................................251.000.001.00-------------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTTTACC.................................................................291.000.00-1.00------------------
.................................................................................................................................................................................................................ATTCAGGTTTATCAAAAGGTAGG..................2311.001.00-1.00------------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTTTTACT................................................................301.000.001.00-------------------
........................................................................................................................................................................ATTTTTTTTTTTTTTTACTTATTTA.........................................................251.000.00-----1.00--------------
............................................................................................................................................................TTATTTTTGTTAATTTTTTTTTTTTTTTACT...............................................................3111.001.001.00-------------------
......................................................................TTGTTCATTGGCCAGAGAAGGA..............................................................................................................................................................2211.001.00--------1.00-----------
.................................................................................CCAGAGAAGGAACCCTGCT......................................................................................................................................................1911.001.00--------1.00-----------
.............................................................................................................................................................TATTTTTGTTAATTTTTTTTT........................................................................2150.200.20-----0.20--------------

Antisense strand
TATTAAAAGATCACATACTCATTTAATTACCTGTAATAATTTTACTTTTTCAACAAATGTCAGCATTTCTTTGTTCATTGGCCAGAGAAGGAACCCTGCTTTGTTTTTTTTCTTTCTCTCTGTAATTGATTAGATTTTCTGTTTAATTTGTGCGAGTTATTTTTGTTAATTTTTTTTTTTTTTTACTTAATTTCTTTTAGAAACATGTCATTCAGGTTTATCAAAAGGTAGGATTTATATATACACATTT
...................................................................................(((((((((((........)))))))))))....(((.(((...((((((((.....))))))))..))))))..............................................................................................
..................................................................................83..............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
............................................................................................................................................................................................................ATGTCATTCAGGTTTAC............................. 177.000.00------7.00-------------
..................................................................................................................................................................................................TTTTAGAAACATGTCCCCC..................................... 191.000.00-------------1.00------
.................................................................................CCAGAGAAGGAACCCGTCT...................................................................................................................................................... 191.000.00-----------1.00--------