ID: uc001ykf.2_intron_1_0_chr14_102026363_r
GENE: (1)
chr14:102026313-102026638-


(3)
AGO2.ip
(2)
B-CELL
(5)
BREAST
(13)
CELL-LINE
(7)
CERVIX
(1)
LIVER
(2)
OTHER
(13)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
ACCCCGAGAGCGGCGGCGCGACTCACCGCGGAGGCGCCCGGACGCGTCAAGTGCGTACTTTCAACCGTAAATGGGTGCTGAGCGTTTAGGGGTGCGGGGCAACTCCCTAACTCGTGGGGCCCTGGCCGGCCCTGCCGCGGCGTCCGAGACCTTCTGATCCCTCGCTGCGCGCGGCGCGGGGTTGGCGACTTGGGCTCAGGGGCGGCGGGGCGGGGAGGTGCCTTGACCTAGGGACCCAGAGGCCGGGAGCAAGTCTCCTTTCGCCTTGGACTGCAGTGTCCCCCAGGGCAAGGCCTGAACCAGGTCGCGAGGGTCTGTCTCCCGTC
............................................................................(((..(((.((((((((((...)).)).))))))..)))..)))....(((..(((((((.((.((((((((.(((.((((((((.(((((....))))).))))))))......))))))..))))).)).))))))).)))...........................................................................................................
...........................................................................76...............................................................................................................................................221.......................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
.......................................................................................................................................................................................................GGGCGGCGGGGCGGGG...............................................................................................................160239.00239.00211.0016.006.00----2.00-----------1.00------1.001.00----1.00--------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGGTT.............................................................................................................1904.001.00----4.00------------------------------------------
.........GCGGCGGCGCGACTCTGG...........................................................................................................................................................................................................................................................................................................184.000.00----------1.00-1.001.00---1.00-----------------------------
.........GCGGCGGCGCGACTCTGGA..........................................................................................................................................................................................................................................................................................................192.000.00----------------------1.001.00-----------------------
.......................................................................................................................................................................................................GGGCGGCGGGGCGGGGAG.............................................................................................................1881.501.50--0.120.12-0.120.38---0.12-------------------------------0.120.120.120.120.12
.........GCGGCGGCGCGACTCTG............................................................................................................................................................................................................................................................................................................171.000.00---------------------------------1.00-------------
................................................................................................................................................................................................GGCTCAGGGGCGGCGGGGTG..................................................................................................................201.000.00-----1.00-----------------------------------------
................................................................................AGCGTTTAGGGGTGCATT....................................................................................................................................................................................................................................181.000.00--------1.00--------------------------------------
........................................................................................................................................................................................GCGACTTGGGCTCAGGGGC...........................................................................................................................1911.001.00---------------------1.00-------------------------
.............................................................................................................................CCGGCCCTGCCGCGGCTGT......................................................................................................................................................................................191.000.00----------------1.00------------------------------
.................................................................................................................................................................................................GCTCAGGGGCGGCGGGGC...................................................................................................................1811.001.00------------------------------1.00----------------
...........................................................................................................................................................................CGGCGCGGGGTTGGCTGGG........................................................................................................................................191.000.00-----------------------------1.00-----------------
.......................................................TACTTTCAACCGTAAACTG............................................................................................................................................................................................................................................................191.000.00------------------------1.00----------------------
.................GCGACTCACCGCGGAGGC...................................................................................................................................................................................................................................................................................................1811.001.00---------------1.00-------------------------------
.......................................................................................................................................................................................................GGGCGGCGGGGCGGGGAT.............................................................................................................181.000.00----------------------------1.00------------------
.......................................................................................................................................................................................................GGGCGGCGGGGCGGGGAGGT...........................................................................................................2011.001.00---1.00-------------------------------------------
....................................................................................................................................................................CTGCGCGCGGCGCGGCCGA...............................................................................................................................................191.000.00-----------------------------------1.00-----------
.......................CACCGCGGAGGCGCCCGG.............................................................................................................................................................................................................................................................................................1811.001.00-------------------------1.00---------------------
..............................................................................................................................................TCCGAGACCTTCTGATCCCTCGCTGCGC............................................................................................................................................................2811.001.00------------------1.00----------------------------
...........................................................................................................................................................GATCCCTCGCTGCGCGCGGCGCGGGGT................................................................................................................................................2711.001.00---1.00-------------------------------------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGTGGA.............................................................................................................191.000.00---1.00-------------------------------------------
.....................CTCACCGCGGAGGCGCCA...............................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGTCGG.............................................................................................................191.000.00--------------1.00--------------------------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGG...............................................................................................................1701.001.00--1.00--------------------------------------------
................................................................................AGCGTTTAGGGGTGCTCA....................................................................................................................................................................................................................................181.000.00--------1.00--------------------------------------
.......................................................................................................................................................................................................GGGCGGCGGGGCGGGGAGG............................................................................................................1950.800.80---0.20--0.20-----------------------------0.20---0.20------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGGA..............................................................................................................1840.750.75---0.50--------------------------------0.25----------
..............................................................................................................................CGGCCCTGCCGCGGCG........................................................................................................................................................................................1620.500.50------0.50----------------------------------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGGACTCT..........................................................................................................2240.250.75---0.25-------------------------------------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGGAAC............................................................................................................2040.250.75-------------------------------------0.25---------
....................................................................................................................................................................................................CAGGGGCGGCGGGGCGGG................................................................................................................1840.250.25--------------------------------------0.25--------
..........................CGCGGAGGCGCCCGG.............................................................................................................................................................................................................................................................................................1560.170.17-----------------------------------------0.17-----

Antisense strand
ACCCCGAGAGCGGCGGCGCGACTCACCGCGGAGGCGCCCGGACGCGTCAAGTGCGTACTTTCAACCGTAAATGGGTGCTGAGCGTTTAGGGGTGCGGGGCAACTCCCTAACTCGTGGGGCCCTGGCCGGCCCTGCCGCGGCGTCCGAGACCTTCTGATCCCTCGCTGCGCGCGGCGCGGGGTTGGCGACTTGGGCTCAGGGGCGGCGGGGCGGGGAGGTGCCTTGACCTAGGGACCCAGAGGCCGGGAGCAAGTCTCCTTTCGCCTTGGACTGCAGTGTCCCCCAGGGCAAGGCCTGAACCAGGTCGCGAGGGTCTGTCTCCCGTC
............................................................................(((..(((.((((((((((...)).)).))))))..)))..)))....(((..(((((((.((.((((((((.(((.((((((((.(((((....))))).))))))))......))))))..))))).)).))))))).)))...........................................................................................................
...........................................................................76...............................................................................................................................................221.......................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
........................................................................................................................................................................................................................................GACCCAGAGGCCGGGGGGG........................................................................... 193.000.00-----2.001.00----------------------------------------
................................CTTGACGCGTCCGGGCGCC................................................................................................................................................................................................................................................................................... 1911.001.00-----------1.00-----------------------------------
......................................................................................................................................................................................................GGGGCGGCGGGGCGGGGACGG........................................................................................................... 2141.000.00------1.00----------------------------------------
....................................................................................................................................TCAGAAGGTCTCGGACGCCGCGGCA......................................................................................................................................................................... 2511.001.00---------1.00-------------------------------------
...........................................................................................................................................................................................................................CCTCTGGGTCCCTAGGTCAAGGC.................................................................................... 2311.001.00--------------------1.00--------------------------
...........................................TTACGGTTGAAAGTACGCACTTGACGC................................................................................................................................................................................................................................................................ 2711.001.00---------1.00-------------------------------------
....CGAGAGCGGCGGCGCGCGAA.............................................................................................................................................................................................................................................................................................................. 201.000.00-------------------------------1.00---------------
.............................................................................................................................................................................................................................................................................CTGGGGGACACTGCAGT........................................ 1740.250.25---------------------------------------0.25-------