ID: uc001xum.1_intron_3_0_chr14_78767035_f.3p
GENE: NRXN3(4)
chr14:79111263-79111512+


(1)
B-CELL
(2)
BRAIN
(3)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(2)
OTHER

Sense strand
GTCGTTTCTCTGCAGTCACCCCTGCTGCTAGTTTCCCTGGTGTTTCGATATAGGACTTGCAGAAGAATTGAAGGGAGTGCTGTGTTGGTATCAGCACAAGAACGGGGCAGTGCCCCTGCGGTGTGTTCTCTTTGGTATTTGCATAGGTCTGACTCTTGCCAGACAAGTGCTGATTGCTTTCCTCTTTTCTTTTCCTATAGCTCGAGAGGAGAATGTGGCCACTTTCCGAGGCTCAGAGTATCTGTGCTAC
...................................................((((...((((....((..((((((..((.((((((....))))))......(((((...)))))......))..))))))..))....((((..(((((........)))))..))))...))))..))))...................................................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR343334SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR343335GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785
..................................................TAGGACTTGCAGAAGATC......................................................................................................................................................................................1849.000.0049.00-----------------
..................................................TAGGACTTGCAGAAGAAGCT....................................................................................................................................................................................20122.0013.00-9.007.006.00--------------
...................................................AGGACTTGCAGAAGAA.......................................................................................................................................................................................16619.1719.17-19.17----------------
....................................................GGACTTGCAGAAGAAGCTA...................................................................................................................................................................................1917.000.00--10.00-4.003.00------------
..................................................TAGGACTTGCAGAAGAAGCTA...................................................................................................................................................................................21115.0013.00-4.003.006.00--2.00-----------
..................................................TAGGACTTGCAGAAGAA.......................................................................................................................................................................................17113.0013.00-13.00----------------
..................................................TAGGACTTGCAGAAGAAATC....................................................................................................................................................................................2014.0013.004.00-----------------
....................................................GGACTTGCAGAAGAAGCT....................................................................................................................................................................................183.000.00--2.00-1.00-------------
..................................................TAGGACTTGCAGAAGAAGC.....................................................................................................................................................................................1912.0013.00--1.00------1.00--------
.......................................................................................................................................................................................CTTTTCTTTTCCTATTCAG................................................192.000.00-------1.00------1.00---
..................................................TAGGACTTGCAGAAGAAG......................................................................................................................................................................................1812.0013.00-1.001.00---------------
...................................................AGGACTTGCAGAAGAAATC....................................................................................................................................................................................1961.1719.171.17-----------------
.................................................................................................................................................................................TTTCCTCTTTTCTTTTCAGAG....................................................211.000.00-----------1.00------
................................................................GAATTGAAGGGAGTGGCGG.......................................................................................................................................................................191.000.00----------1.00-------
.........................................................................................................................................................................................................TCGAGAGGAGAATGTGG................................1720.500.50----------------0.50-
...................................................AGGACTTGCAGAAGAAGCT....................................................................................................................................................................................1960.5019.17--0.33-0.17-------------
..................................................TAGGACTTGCAGAAG.........................................................................................................................................................................................1560.330.33-0.33----------------

Antisense strand
GTCGTTTCTCTGCAGTCACCCCTGCTGCTAGTTTCCCTGGTGTTTCGATATAGGACTTGCAGAAGAATTGAAGGGAGTGCTGTGTTGGTATCAGCACAAGAACGGGGCAGTGCCCCTGCGGTGTGTTCTCTTTGGTATTTGCATAGGTCTGACTCTTGCCAGACAAGTGCTGATTGCTTTCCTCTTTTCTTTTCCTATAGCTCGAGAGGAGAATGTGGCCACTTTCCGAGGCTCAGAGTATCTGTGCTAC
...................................................((((...((((....((..((((((..((.((((((....))))))......(((((...)))))......))..))))))..))....((((..(((((........)))))..))))...))))..))))...................................................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR343334SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR343335GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785
...............................TTTCCCTGGTGTTTCGATA........................................................................................................................................................................................................ 191.000.00--------1.00---------
..........................................................................................................GCAGTGCCCCTGCGGTAGGG............................................................................................................................ 201.000.00---------------1.00--
.................................................................................................................................................................................................................CTCGGAAAGTGGCCACATTCT.................... 2111.001.00-------------1.00----
..........................................................................................................GCAGTGCCCCTGCGGTAGC............................................................................................................................. 191.000.00------------1.00-----
........................................................................CAACACAGCACTCCC................................................................................................................................................................... 1590.110.11-----------------0.11