ID: uc001xrk.2_intron_11_0_chr14_75576581_r
GENE: (4)
chr14:75576531-75577073-


(16)
B-CELL 		(4)
BRAIN 		(14)
BREAST 		(48)
CELL-LINE 		(12)
CERVIX 		(4)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(33)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GAGATGGAGGAAAAAGTCACTCTGCTTAATGCACCTACAAAGAGACCAAGGTAATGTTCAAGAGACTCTTAAAAACTAATATATCCGAAATTACAACCAGGGGGTTCTTTCTTGAGTGTAGGCATTATTTGATCCGAGGATACTTTGGCATCCTTTCAGGAGCCAGCATCTGCTTAAATGTCAGACAGTCATTTCTAAGAAGAAAGCTATAATTTCACCCTCACACTAAAGTGGCCATCATTACCATGATGAATGTGGAAAAGTGTAGGTGTTATGGGTCAGACTGGAATCTGATCTGGCCAAGCTGTGATGAAGCCCTGAGGCAGGAATTGCAAAGTCTGCTGTGATAGAGCACATTGAAACAAGTTGTCGAGAAAGAACATACTTTCTCATACCATAATTGGCAGTTCTTCTCAGGGAACAGACTGGAAGCATTTTTCTTTGATATTGTTTTTAATGTTAAATGTTCCTTTGTTCTGGGGGTTGTTGGCAGGTCAAGCACTGTGACTGAAGCACCCATTGCTGTAGTAACATCACGAACCA
..........................................................................................................................................................................................................................................................................................................(((((..........((((((.(((((((((((((..((((((((.(((.(((((..................(((((((......)))))))...(((....)))..)))))..))).))..))))))....)))......((((((((((....)))))))))).))))))..)).)).)))))).)))))....................................................
.........................................................................................................................................................................................................................................................................................................298................................................................................................................................................................................................493................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532873(GSM532873)
G699N. (cervix)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGG............................................................................................................................................................................................................................211229.00229.0053.0014.0020.006.0014.007.0012.002.008.007.001.001.004.005.001.00-1.004.001.00-3.003.001.003.005.003.002.00---3.002.001.00--2.00-----1.002.00-----2.00---1.002.003.00--1.00---2.00----1.00--1.002.00------1.001.001.002.00-2.00---1.00---1.00-1.00--1.00-------1.001.001.00-1.001.00-------1.00-1.00---1.00--1.00---1.00----1.00--------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGG............................................................................................................................................................................................................................221100.00100.004.0015.00-10.00-5.002.009.00-2.003.003.003.00-3.00-2.00-1.00-1.002.001.00--2.00--1.00-1.00-1.002.00-2.002.002.00--2.00-1.00------1.00-2.00---2.00----2.00--------1.00---1.002.001.00-----1.00---------1.00--------------1.00----------1.00-----1.00--------------------1.00----
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGCA..........................................................................................................................................................................................................................24135.0035.00----3.001.00-1.00--2.001.001.00-1.00-1.002.001.00----1.00----2.00--2.00-2.00--2.001.00--1.00-----------1.00----------2.00---------------1.00---1.00----------1.00-----------------------------------1.00--1.00----1.00-------1.00--
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGC...........................................................................................................................................................................................................................23122.0022.003.00-1.001.00----1.00---1.00---1.00---------2.00-1.00---1.00--------------1.00---1.00------2.00---1.00-----2.00-------2.00--------------------1.00---------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGGC...........................................................................................................................................................................................................................22120.0020.005.00-1.00--1.00---1.00------1.00---1.00-2.00------2.00------------------1.00--------1.00--------1.00------1.00---1.00---1.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGCAG.........................................................................................................................................................................................................................25115.0015.00-----1.00----1.002.00--1.00-1.00-----1.00------2.00-------------------2.00------------------------------------------------------------1.00--1.00-1.00------------------------1.00--------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGGCAG.........................................................................................................................................................................................................................2417.007.00---1.00-1.00---1.00-1.00-----------------------------------------------------------1.00---1.00-------------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGGCA..........................................................................................................................................................................................................................2317.007.00-------1.00---1.00-----------1.00-----------------------------------------------1.00---------------------------1.001.00----------------------------------1.00-------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAGC...........................................................................................................................................................................................................................197.000.00----------------------------------1.00---1.00----2.00--1.00------------------2.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGGGGTTGTTGGCA...................................................1817.007.00---------------7.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................GCTGTGATGAAGCCCTGAGG............................................................................................................................................................................................................................2026.506.500.50-------2.00----4.00---------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTG...............................................................................................................................................................................................................................1815.005.00---------------------------------------3.00-2.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGCAA.........................................................................................................................................................................................................................2514.0035.00-------1.00--2.00---------------------1.00--------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAG............................................................................................................................................................................................................................184.000.00-----------------------------------------------------------1.00--------------------------------------1.00-------------1.00-------------------1.00----------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGCAGG........................................................................................................................................................................................................................2613.003.00------------------2.00-------------------------------------------------------------------------------------------------------------1.00--------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTTGC...........................................................................................................................................................................................................................193.000.00----------------------------------1.00------------------------1.00------------------------------------------------------1.00----------------------------------
................................................................................................................................................................................................................................................TTACCATGATGAATGTGGAAAAGTGTAGGTGTTATGGGTCAGACTGGAATCTGAT........................................................................................................................................................................................................................................................5512.002.00------------------------------------------------------------------------------------2.00----------------------------------------------------------------
...................................................................CTTAAAAACTAATATACTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................202.000.00---------------------------2.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAGA...........................................................................................................................................................................................................................192.000.00--------------------------------------1.00--------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAGT...........................................................................................................................................................................................................................192.000.00--------------------------------------1.00-------------------------------------------------------------------------------------------------1.00------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAAGCACTGTGACTGA................................2012.002.00------------------------------------------------------------------------2.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAA............................................................................................................................................................................................................................182.000.00--------------------------------------------------1.00----------------------------------------------------------------------------------------------1.00---
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGGTCAAGCACTGTGACTGAAGC.............................2612.002.00---------------------------------------------2.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGGAA..........................................................................................................................................................................................................................2312.00229.00--------------2.00--------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACTGTGACTGAAGCAC...........................2012.002.00--------------------------------------------------1.00---------------------------------------------------1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGAAGCT..........................................................................................................................................................................................................................202.000.00---------------------------1.00------1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGCAGT...........................................................................................................................................................................................................................191.000.00----------------------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGTGACTGAAGCACCC.........................2011.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.......................................AAGAGACCAAGGTAATGTTCAAGAGACCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00--------------------------------------------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTAAT...........................................................................................................................................................................................................................191.000.00----------------------------------------------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGCAGA........................................................................................................................................................................................................................2611.0015.00-----------------------------------------------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGT............................................................................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTAGTAACATCAC......1811.001.00--------------------------------------------------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGAACAGACTGGAAGCATTTTCTT......................................................................................................281.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAACAGACTGGAAGCACAAA.........................................................................................................221.000.00--------------------------------------------------------------1.00--------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................AGAGCACATTGAAACTCC.................................................................................................................................................................................181.000.00-------------------------------------------------------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................ATGAAGCCCTGAGGCAGGAATCGC..................................................................................................................................................................................................................241.000.00--------------------------------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCACTGTGACTGAA...............................1811.001.00------------------1.00----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCCATTGCTGTAGTAACATCACG.....2711.001.00-------------------------------------------------------------------1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTATC...........................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------------------------------------1.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCAGGTCAAAAAC.........................................201.000.00------------------------------------------------------------------------------------------------1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACTGTGACTGAAGCACCCAT.......................2411.001.00-------------------------------------------------------------------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACTGTGACTGAAGCACC..........................2111.001.00--------------------------------------------------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCATTTTTCTTTAAG.................................................................................................191.000.00----------------------------------------------------------------------------------------------------------------------------------------------1.00------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTGTAGTAACATCACGAACC.2511.001.00---------------------------------------------------------------------------------------------------------------------------------------------1.00-------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTCG............................................................................................................................................................................................................................181.000.00-------------------------------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................CAAGCTGTGATGAAGCCCTGAGGCAG.........................................................................................................................................................................................................................2611.001.00----------1.00------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGACTGGAAGAGAA...........................................................................................................191.000.00---------------------------------------------------------------------------------------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTCGA...........................................................................................................................................................................................................................191.000.00----------------------------------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCACTGTGACTGAAG..............................1811.001.00---------------------------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAAGCACTGTGACTGAAGC.............................2311.001.00-----------------------------------------------------------------------------------------------------------------------------------------------1.00-----
................TCACTCTGCTTAATGCACCTACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------------------------------------------------------------------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGACTGAAGCACCC.........................1611.001.00-----------------------------------------------------------------------------------------------------------------------1.00-----------------------------
.....................................................................................................................................................................................................................................................................AGTGTAGGTGTTATGGGCCAG.....................................................................................................................................................................................................................................................................211.000.00--------------------------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................TTTGGCATCCTTTCAGGAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGAGC............................................................................................................................................................................................................................211.000.00--------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGGAA..........................................................................................................................................................................................................................2411.00100.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................AATTACAACCAGGGGGTTCTTTCTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTGCTGTAGTAACATCACG.....2311.001.00------------------------------------------------------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................ATTGAAACAAGTTGTCGAGAAAGAAC..................................................................................................................................................................2611.001.00-------------------------------------------------------------------1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGATGAAGCCCTGTGC............................................................................................................................................................................................................................181.000.00----------------------------------------------------1.00------------------------------------------------------------------------------------------------
................................................................................................................................................TTGGCATCCTTTCAGGAGGACT.........................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTTGGCAGGTCTTT............................................181.000.00-------------------------------------------------------------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AAGTTGTCGAGAAAGGTT..................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------1.00-------------------------------------
...............................................................................................ACCAGGGGGTTCTTTCTTGAGTGTAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
..........................TAATGCACCTACAAAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00---------------------------------------------------------------------------------------------
..........AAAAAGTCACTCTGCTTAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGCACTGTGACTGAAGC.............................2111.001.00----------------------------------------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCATTGCTGTAGTAACATCACGAAC..2811.001.00------------------------------------------------------------------------------------------------------------------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTGTAGTAACATCACGAA...2311.001.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGTAGTAACATCACG.....2011.001.00----------------------------------------------------------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCCTGAGT............................................................................................................................................................................................................................221.000.00-1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.......AGGAAAAAGTCACTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTGACTGAAGCACC..........................1811.001.00-----------------------------------------------------------------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGATG............................................................................................................................................................................................................................211.000.00------1.00----------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGCTGTGATGAAGCCCTGTGGC...........................................................................................................................................................................................................................2211.005.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGCTGTGATGAAGCCC.................................................................................................................................................................................................................................1730.330.33---------------------------------------------------------------------------------------------------------------------------------------------------0.33-
.......................................................................................................................................GAGGATACTTTGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................1550.200.20----------------------------------------------------------------------------------------------------------------------------------------------------0.20

Antisense strand
GAGATGGAGGAAAAAGTCACTCTGCTTAATGCACCTACAAAGAGACCAAGGTAATGTTCAAGAGACTCTTAAAAACTAATATATCCGAAATTACAACCAGGGGGTTCTTTCTTGAGTGTAGGCATTATTTGATCCGAGGATACTTTGGCATCCTTTCAGGAGCCAGCATCTGCTTAAATGTCAGACAGTCATTTCTAAGAAGAAAGCTATAATTTCACCCTCACACTAAAGTGGCCATCATTACCATGATGAATGTGGAAAAGTGTAGGTGTTATGGGTCAGACTGGAATCTGATCTGGCCAAGCTGTGATGAAGCCCTGAGGCAGGAATTGCAAAGTCTGCTGTGATAGAGCACATTGAAACAAGTTGTCGAGAAAGAACATACTTTCTCATACCATAATTGGCAGTTCTTCTCAGGGAACAGACTGGAAGCATTTTTCTTTGATATTGTTTTTAATGTTAAATGTTCCTTTGTTCTGGGGGTTGTTGGCAGGTCAAGCACTGTGACTGAAGCACCCATTGCTGTAGTAACATCACGAACCA
..........................................................................................................................................................................................................................................................................................................(((((..........((((((.(((((((((((((..((((((((.(((.(((((..................(((((((......)))))))...(((....)))..)))))..))).))..))))))....)))......((((((((((....)))))))))).))))))..)).)).)))))).)))))....................................................
.........................................................................................................................................................................................................................................................................................................298................................................................................................................................................................................................493................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532873(GSM532873)
G699N. (cervix)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.........................................................................................................................................................................................................................................................TGAATGTGGAAAAGTGCAG................................................................................................................................................................................................................................................................................... 192.000.00---------------------------------------------------------------------------------------1.00---------------------------------------1.00---------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGTTGTTGGCACATG............................................... 191.000.00-----------------------------------------------------------------------------------------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTTCTCAGGGACTG........................................................................................................................ 181.000.00--------------------------------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................TAAGAAGAAAGCTATCATA......................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................CAGACTGGAATCTGATCAA..................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------------------------------------------------1.00------------------------------------------------------------
.................................................................................................................GAGTGTAGGCATTATTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGGAAGCATTTATC....................................................................................................... 181.000.00----------------------------------------------------------------------------------------------------------------------------1.00------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGGCAGTTCTTA.................................................................................................................................. 171.000.00-------------------------------------------------------------------------------------------------------------------------1.00---------------------------