ID: uc001xin.2_intron_0_0_chr14_65878712_f.3p
GENE: (1)
chr14:65922139-65922388+


(4)
B-CELL
(2)
BRAIN
(3)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(1)
HELA
(5)
LIVER
(2)
OTHER
(1)
RRP40.ip
(38)
SKIN
(1)
TESTES

Sense strand
GGTATAATTTGCAAAATGAAAACCCATTTTTTGTTGACATTTGGAAAGTGCTTACAGAATAAGTCAGTGTACAAAATAAGTGAATTTGCATGTTATGACTGGCTACATAAAGAAAAGTTAAAGGTATTTAAAAAATTATATAATAATGCTAACTGAAGCTTGAGTAGGGCTGAATTTCATATATTTTTATTTTGTTTCAGGTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTT
..........................................................................................................................((((((................))))))..(((((((..((((((((...............)))))))).)))))))..................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
........................................................................................................................AAGGTATTTAAAAAACC.................................................................................................................17406.000.0074.0056.0055.0031.0030.00--19.0017.0013.00-10.008.007.007.00-5.004.004.004.004.003.003.003.003.003.003.00-3.00-2.002.002.002.002.002.002.00-2.001.002.00---2.00---1.001.00-1.00-1.001.001.001.00---1.001.001.00-1.00-1.00---1.00-1.00-1.00-1.00-----
.................................................................................................................................................................................CATATATTTTTATTTTTTTG.....................................................2060.000.00-----30.0023.00--------5.00-------------2.00----------------------------------------------------
........................................................................................................................AAGGTATTTAAAAAACCA................................................................................................................1817.000.00----------9.00------------------------------2.002.00----1.00-----------------1.00--1.00----------1.00--
........................................................................................................................AAGGTATTTAAAAAACCAT...............................................................................................................1910.000.00----------4.00--------------------------------2.00--------------1.001.00-------------1.00-1.00------
...........................................GAAAGTGCTTACAGAGGAG............................................................................................................................................................................................192.000.00---------------------------1.00----------------------1.00-------------------------------
..............................................................................................................................................................................................TTTGTTTCAGGTTGCTGCTTTTGCCC..................................261.000.00-------------------------------------1.00--------------------------------------------
........................................................................................................................AAGGTATTTAAAAAACCAC...............................................................................................................191.000.00-----------------------------------------------------------------------------1.00----
...............................................................................................................................................................................TTCATATATTTTTATTTTTTTG.....................................................221.000.00---------------1.00------------------------------------------------------------------
.................................................................................................................................................................................................................TTTGCTCAGAGGACATCC.......................1811.001.00----------------------------------------------------1.00-----------------------------
............................................AAAGTGCTTACAGAACAAT...........................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00--------------
............................................AAAGTGCTTACAGAATCCTG..........................................................................................................................................................................................201.000.00---------------------------1.00------------------------------------------------------
...........................................GAAAGTGCTTACAGATCAT............................................................................................................................................................................................191.000.00---------------------------1.00------------------------------------------------------
...............................................................................................................................................................................TTCATATATTTTTATTTAATT......................................................211.000.00------1.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................GCTTTTGCTCAGAGGACATCCATGAC..................2611.001.00---------------------------------------------------------------1.00------------------
.....................................................................................................................................................................AGGGCTGAATTTCATATATTTTTA.............................................................2411.001.00---------------------------------------------------------1.00------------------------
............................................................................................................................................................................................ATTTTGTTTCAGGTTGCTGCTTTTG.....................................2511.001.00-------------------------------------1.00--------------------------------------------
......................................................................................................................................................................................ATTTTTATTTTGTTTCAAACG...............................................211.000.00----------------------------------------------1.00-----------------------------------
....................................................................................................................................................................TAGGGCTGAATTTCATATATTTTTATCTT.........................................................291.000.00-----------------------------1.00----------------------------------------------------
...........................................................................................................................................................AAGCTTGAGTAGGGCTGAATT..........................................................................2111.001.00------------------------------------------------------------------------------1.00---
..............................................................................................................................................................................................................GCTTTTGCTCAGAGGACAT.........................1911.001.00-----------------------------------------------------------------------1.00----------
.....................................................................................................................................................................................................CAGGTTGCTGCTTTTGC....................................1720.500.50--------------------------------------------------------------------------------0.50-

Antisense strand
GGTATAATTTGCAAAATGAAAACCCATTTTTTGTTGACATTTGGAAAGTGCTTACAGAATAAGTCAGTGTACAAAATAAGTGAATTTGCATGTTATGACTGGCTACATAAAGAAAAGTTAAAGGTATTTAAAAAATTATATAATAATGCTAACTGAAGCTTGAGTAGGGCTGAATTTCATATATTTTTATTTTGTTTCAGGTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTT
..........................................................................................................................((((((................))))))..(((((((..((((((((...............)))))))).)))))))..................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
....................................................................................................................................................................................................................GCTCAGAGGACATCCATCTG.................. 201.000.00---------------------------------------------------------------------1.00------------
............................................................................................................................................................................................................CTGCTTTTGCTCAGAGGAG........................... 191.000.00---------------------------------------1.00------------------------------------------
.......................................................................................................................................................................................................................................CCCTAATGGTCTTTTTGCTGA 211.000.00---------------------------------------------1.00------------------------------------
............................................................................................................................................................................AAATAAAAATATATGAAATT.......................................................... 2030.330.33---------------------------------------------------------------------------------0.33