ID: uc001xek.1_intron_3_0_chr14_60070640_r.3p
GENE: (3)
chr14:60070590-60070839-


(1)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(1)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AGTGATCCAAATAGTTCCAAGAGAACTAAGGACTGGATCCTCTTTCATTGATTCTGTGATGAGCTTTCAACGCCTTTCATTGACTATCGAAATCATGATGTATTCTGACTCAAATTCAAATCTAGGTAAAAGTCAATGATATGAGACTCTAACTTGTCAGGAAGGGTTTTAGGAGCTCTAATAATGCTTTCGTTCTTCAGTTTGCAGTCCTGATGTGGCTCCTGACCTACGTTGGCGCTCTCTTCAATGG
......................................................................................................(((((((..............((((...((((..........))))...)))))))))))........................................................................................
.....................................................................................86...........................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577588(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)
..........................................................................................AATCATGATGTATTCTGACT............................................................................................................................................20154.0054.0017.0012.00---5.00-3.003.00--1.002.001.00--1.00--1.001.001.001.001.001.001.001.00---1.00------------
.............................................................................................................................................TGAGACTCTAACTTGTGA...........................................................................................18228.500.50--6.504.004.50-3.50--1.002.00---1.00---0.50----------1.00--0.50-0.500.500.500.500.500.500.500.50-
.........................................................................................AAATCATGATGTATTCTGACT............................................................................................................................................2113.003.00-----1.00-----1.00-1.00-----------------------------
.............................................................................................................................................TGAGACTCTAACTTGTG............................................................................................1723.000.50--1.00-------0.50----1.50---------------------------
............AGTTCCAAGAGAACTCTG............................................................................................................................................................................................................................182.000.00---------2.00---------------------------------
.............................................................................................................................................TGAGACTCTAACTTGTGAA..........................................................................................1921.500.50------------------0.50--------------0.50--------0.50
..................AAGAGAACTAAGGACTG.......................................................................................................................................................................................................................1711.001.00---------------------------1.00---------------
.................................................................................................................................................................................................................................CCTACGTTGGCGCTCTCTTCAATGG2511.001.00---1.00---------------------------------------
.........................................................................................................................................................................................................................GCTCCTGACCTACGTTGGC..............1911.001.00---1.00---------------------------------------
........................................................................................................................................................................................................................................TGGCGCTCTCTTCAATTGC191.000.00----1.00--------------------------------------
.............................................................................................................................................TGAGACTCTAACTTGTGG...........................................................................................1820.500.50--------------0.50----------------------------
.............................................................................................................................................TGAGACTCTAACTTGT.............................................................................................1620.500.50----0.50--------------------------------------
.........................................................................................AAATCATGATGTATTCT................................................................................................................................................1740.250.25--------------------------------0.25----------

Antisense strand
AGTGATCCAAATAGTTCCAAGAGAACTAAGGACTGGATCCTCTTTCATTGATTCTGTGATGAGCTTTCAACGCCTTTCATTGACTATCGAAATCATGATGTATTCTGACTCAAATTCAAATCTAGGTAAAAGTCAATGATATGAGACTCTAACTTGTCAGGAAGGGTTTTAGGAGCTCTAATAATGCTTTCGTTCTTCAGTTTGCAGTCCTGATGTGGCTCCTGACCTACGTTGGCGCTCTCTTCAATGG
......................................................................................................(((((((..............((((...((((..........))))...)))))))))))........................................................................................
.....................................................................................86...........................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577588(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)
.................................................................TTCAACGCCTTTCATTGAT...................................................................................................................................................................... 191.000.00-------------------------------1.00-----------
......................................................................................................................................................................................AATGCTTTCGTTCTTTGCC................................................. 191.000.00----------------------------1.00--------------
.........................................................................................................................................................................................GCTTTCGTTCTTCAGTTGG.............................................. 191.000.00-----------------1.00-------------------------