ID: uc001xbk.1_intron_0_0_chr14_55309773_r.3p
GENE: GCH1(5)
chr14:55309723-55309972-


(1)
AGO1.ip 		(1)
B-CELL 		(1)
BREAST 		(10)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(1)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAAAGCCATTATTTTATGAGACTTAGTACTCACACTGCAAATAACTAGTCAGCTCAGTTTTAACTTTATAGGTTTATTGAGTTTCCTTTGTGTGATCCATGTAGATGCCTCAAAATGTTTCTTCTTCTTCTTTTTTTTAATCTTATAAGATATTTTTCTAAGTATTTCCAGAAACATTTGAGAGTGCCCATCATTTTCAGGTCTGCAGAACCATAGCTTCCACGCACCTGAACGAGCACAGAATGAACTG
............................................................................................................................................(((....((((((((....))))))))..)))......((((((((.....))))))))...................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040018(GSM532903)
G701N. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................321163.00163.0077.0060.0016.0010.00---------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................31173.0073.0029.0027.007.009.00--1.00------------------------
...............................................................................................................................TTCTTTTTTTTAATCTTATAAG.....................................................................................................22143.0043.0030.0011.001.001.00---------------------------
.......................................................................................................................TCTTCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................30138.0038.0019.0013.002.004.00---------------------------
.............................................................................................................................TCTTCTTTTTTTTAATCTTATAAG.....................................................................................................24125.0025.0016.009.00-----------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTACAAG.....................................................................................................3217.000.00--7.004.00--6.00------------------------
........................................................................................................................CTTCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................29114.0014.007.006.001.00----------------------------
............................................................................................................................TTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................25112.0012.005.006.00-1.00---------------------------
.........................................................................................................................TTCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................28112.0012.005.005.001.001.00---------------------------
...........................................................................................................................CTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................26111.0011.008.003.00-----------------------------
..........................................................................................................................TCTTCTTCTTTTTTTTAATCTTATAAG.....................................................................................................2719.009.004.004.001.00----------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATAA......................................................................................................3114.004.002.001.00-1.00---------------------------
.........................................................................................................................................................................AGAAACATTTGAGAGTGCCC.............................................................2014.004.00----3.001.00-------------------------
.............................................................................................................................................................................................................................ACGCACCTGAACGAGCACAGAATGA....2513.003.00----2.00------------------------1.00-
.......................................................................................................................TCTTCTTCTTCTTTTTTTTAATCTTACAAG.....................................................................................................303.000.00---3.00---------------------------
..............................................................................................................................CTTCTTTTTTTTAATCTTATAAG.....................................................................................................2313.003.001.002.00-----------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATA.......................................................................................................3013.003.00-2.00-1.00---------------------------
.....................................CAAATAACTAGTCAGCTCAG.................................................................................................................................................................................................2013.003.00-------3.00-----------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTACAAG.....................................................................................................313.000.00---2.00--1.00------------------------
.........................................................................................................................TTCTTCTTCTTTTTTTTATACG...........................................................................................................222.000.00---------2.00---------------------
.............................................................................................................................TCTTCTTTTTTTTAATCTTATAAA.....................................................................................................242.000.00-2.00-----------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATAAT.....................................................................................................3212.004.002.00------------------------------
............................................................................................................................................................................................................................CACGCACCTGAACGAGCACAGAATG.....2512.002.00----2.00--------------------------
..................AGACTTAGTACTCACACTGCAAATAAC.............................................................................................................................................................................................................2712.002.00-----1.00----1.00--------------------
.......................................................................................................................................................................CCAGAAACATTTGAGAGTGCCC.............................................................2212.002.00----2.00--------------------------
....................................................................................................................................................................................................................................TGAACGAGCACAGAATGAACT.2112.002.00----1.001.00-------------------------
.........................................................................................................................................................................AGAAACATTTGAGAGTGCCCTTCA.........................................................2411.004.00-----1.00-------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTCATA.......................................................................................................301.000.00------1.00------------------------
............................................................................................................................TTCTTCTTTTTTTTAATCTTATATG.....................................................................................................251.000.001.00------------------------------
.....................................................................................................................................................................................................................................GAACGAGCACAGAATGAA...1811.001.00-----1.00-------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTAT........................................................................................................2811.001.00---1.00---------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATACG.....................................................................................................3211.003.00--1.00----------------------------
..................................................................................................................................................................TATTTCCAGAAACATTTGAGAGTGCCCATC..........................................................3011.001.00------1.00------------------------
.......................................................................................................................................................................CCAGAAACATTTGAGAGTG................................................................1911.001.00-------------------1.00-----------
..................AGACTTAGTACTCACACTGCA...................................................................................................................................................................................................................2111.001.00----1.00--------------------------
.................................................................................................................................................................................................................................ACCTGAACGAGCACAGAATGAA...2211.001.00-----1.00-------------------------
.........................................................................................................................................................................AGAAACATTTGAGAGTGCC..............................................................1911.001.00----1.00--------------------------
..........................................................................................................................TCTTCTTCTTTTTTTTACTAT...........................................................................................................211.000.00-1.00-----------------------------
.................................................................................................................................................................................................................................ACCTGAACGAGCACAGAATG.....2011.001.00----1.00--------------------------
..............................................................................................................................CTTCTTTTTTTTAATCTACAG.......................................................................................................211.000.00--1.00----------------------------
........................................................................................................................................................................................................................CTTCCACGCACCTGAACGAGCA............2211.001.00-------------1.00-----------------
........................................................................................................................CTTCTTCTTCTTTTTTTTAATCTTATATG.....................................................................................................291.000.00-1.00-----------------------------
.........................................................................................................................TTCTTCTTCTTTTTTTTAATCTTATTAT.....................................................................................................281.000.001.00------------------------------
....................................................................................................................................................................................................................ATAGCTTCCACGCACCTGAACGAGCACA..........2811.001.00-----1.00-------------------------
.......................................................................................................................TCTTCTTCTTCTTTTTTTTAATCATAA........................................................................................................271.000.00---1.00---------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCTTATATG.....................................................................................................3211.003.00--1.00----------------------------
..........................................................................................................................TCTTCTTCTTTTTTTTAATCTTATGAA.....................................................................................................271.000.001.00------------------------------
.................................................................................................................................CTTTTTTTTAATCTTATAAGATATTTCTAA...........................................................................................301.000.001.00------------------------------
..........................................................................................................................................................................................................................TCCACGCACCTGAACGAGCACAG.........2311.001.00-----1.00-------------------------
..........................................................................................................................................................................................................................TCCACGCACCTGAACGAGCACAGAA.......2511.001.00----1.00--------------------------
.........................................................................................................................................................................AGAAACATTTGAGAGTGCCCA............................................................2111.001.00--------------------1.00----------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTCATG.............................................................................................................241.000.00-1.00-----------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCAG..........................................................................................................261.000.00--1.00----------------------------
................................................................................................................................TCTTTTTTTTAATCTTATAAG.....................................................................................................2111.001.001.00------------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTATAA......................................................................................................3011.001.001.00------------------------------
.........................................................................................................................................................................AGAAACATTTGAGAGTGC...............................................................1811.001.00----1.00--------------------------
.......................................................................................................................TCTTCTTCTTCTTTTTTTTATTG............................................................................................................231.000.00-1.00-----------------------------
...........................................................................................................................CTTCTTCTTTTTTTTAATCTTATAA......................................................................................................2511.001.001.00------------------------------
........................................................................................................................................................................CAGAAACATTTGAGAGTGCCC.............................................................2111.001.00----1.00--------------------------
..........................................AACTAGTCAGCTCAGTTTTA............................................................................................................................................................................................2011.001.00----1.00--------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTATCTG...........................................................................................................261.000.00-1.00-----------------------------
.........................................................................................GTGTGATCCATGTAGATGCCTCAAAATGTT...................................................................................................................................3011.001.00-----1.00-------------------------
..............................................................................................................................................................................................TCATTTTCAGGTCTGCAGAACCA.....................................2311.001.00-----------------------1.00-------
..................................................................................................................................................................................................................................CCTGAACGAGCACAGAATGAACT.2311.001.00----1.00--------------------------
.......................................................................................................................TCTTCTTCTTCTTTTTTTTAATCTTATAAA.....................................................................................................301.000.00--1.00----------------------------
...........................................................................................................................................................................................................................CCACGCACCTGAACGAGCACAGAA.......2411.001.00--------------1.00----------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTATTG............................................................................................................251.000.00--1.00----------------------------
..........................................................................................................................................................................GAAACATTTGAGAGTGCC..............................................................1811.001.00-----1.00-------------------------
........................................................................................................................CTTCTTCTTCTTTTTTTTAATAAG..........................................................................................................241.000.00---1.00---------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTATA.......................................................................................................2911.001.001.00------------------------------
..........................................................................................................................................................................................CCCATCATTTTCAGGTCTGCAGAAC.......................................2511.001.00----1.00--------------------------
...................................................................................................................................................................................................................................CTGAACGAGCACAGAATGAACT.2211.001.00----1.00--------------------------
............................................................................................................................TTCTTCTTTTTTTTAATCTACTT.......................................................................................................231.000.001.00------------------------------
..............................................................................................................................CTTCTTTTTTTTAATCTTTAT.......................................................................................................211.000.00-1.00-----------------------------
......................................................................................................................TTCTTCTTCTTCTTTTTTTTAATCTTATAAA.....................................................................................................3111.001.001.00------------------------------
....................................................................................................................................................................................................................................TGAACGAGCACAGAATGAA...1911.001.00----1.00--------------------------
.................................................................................................................................................................................................................................ACCTGAACGAGCACAGAATGA....2111.001.00----------1.00--------------------
.......................................................................................................................................................................CCAGAAACATTTGAGAGTGCCG.............................................................221.000.00----1.00--------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTCCAG............................................................................................................251.000.00--1.00----------------------------
......................................................................................................................................................................................................AGGTCTGCAGAACCATAGCTTCCACGC.........................2711.001.00-----1.00-------------------------
................................................................................................................................................................................................................AACCATAGCTTCCACGCACCTG....................2211.001.00------------------------1.00------
.........................................................................................................................................................................AGAAACATTTGAGAGTGCCCATCATT.......................................................2611.001.00----1.00--------------------------
...............................................................................................................................TTCTTTTTTTTAATCTTATAAA.....................................................................................................221.000.00-1.00-----------------------------
...............................................................................................................................................................AAGTATTTCCAGAAACATT........................................................................1911.001.00----1.00--------------------------
.............................................................................................................................TCTTCTTTTTTTTAATCTTATA.......................................................................................................2211.001.00-1.00-----------------------------
....................................................................................................................................................................................................................ATAGCTTCCACGCACCTGAACGAGCAC...........2711.001.00---------------------------1.00---
...........................................................................................................................CTTCTTCTTTTTTTTAATCATTT........................................................................................................231.000.00-1.00-----------------------------
....................................................................................................GTAGATGCCTCAAAATGTA...................................................................................................................................191.000.00-------------------------1.00-----
.......................................................................................................................TCTTCTTCTTCTTTTTTTTAATTTTG.........................................................................................................261.000.00---1.00---------------------------
......................................................................................TTTGTGTGATCCATGTAGATGCCTCA..........................................................................................................................................2611.001.00-----------1.00-------------------
..........................................................................................................................................................................................................................TCCACGCACCTGAACGAGCACAGAATGA....2811.001.00-----1.00-------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTCAG.............................................................................................................241.000.00---1.00---------------------------
.................................................................................................................AATGTTTCTTCTTCTTCTTTTCTTT................................................................................................................251.000.00--------1.00----------------------
.............................................................................................................................TCTTCTTTTTTTTAATCTTATAAT.....................................................................................................241.000.001.00------------------------------
....................................................................................................................................................................................................................................TGAACGAGCACAGAATGAACTGATA251.000.00----1.00--------------------------
.................GAGACTTAGTACTCACACTGCA...................................................................................................................................................................................................................2211.001.00----1.00--------------------------
................................................................................................................................................................................................................................CACCTGAACGAGCACAGAATA.....211.000.00----1.00--------------------------
.....................................................................................................................TTTCTTCTTCTTCTTTTTTTTAATCAT..........................................................................................................271.000.00--1.00----------------------------
....................................................................................CCTTTGTGTGATCCATGTAGATG...............................................................................................................................................2311.001.00--------------------------1.00----
..................AGACTTAGTACTCACACTGCAAATAA..............................................................................................................................................................................................................2611.001.00----1.00--------------------------
..................................................................................................................ATGTTTCTTCTTCTTCTTTTTTTTAATCC...........................................................................................................291.000.00--------1.00----------------------
..........................................................................................................................TCTTCTTCTTTTTTTTATAAT...........................................................................................................211.000.00-1.00-----------------------------
.................................................................................................................AATGTTTCTTCTTCTTCTTTTTTTTAATCT...........................................................................................................3011.001.00--------1.00----------------------
........................................................................................................................................................................CAGAAACATTTGAGAGTGCCCATCA.........................................................2511.001.00-----1.00-------------------------
...........................................ACTAGTCAGCTCAGT................................................................................................................................................................................................1550.200.20------------------------------0.20

Antisense strand
AAAAGCCATTATTTTATGAGACTTAGTACTCACACTGCAAATAACTAGTCAGCTCAGTTTTAACTTTATAGGTTTATTGAGTTTCCTTTGTGTGATCCATGTAGATGCCTCAAAATGTTTCTTCTTCTTCTTTTTTTTAATCTTATAAGATATTTTTCTAAGTATTTCCAGAAACATTTGAGAGTGCCCATCATTTTCAGGTCTGCAGAACCATAGCTTCCACGCACCTGAACGAGCACAGAATGAACTG
............................................................................................................................................(((....((((((((....))))))))..)))......((((((((.....))))))))...................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040018(GSM532903)
G701N. (cervix)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................AGTTTCCTTTGTGTGATTTTG...................................................................................................................................................... 212.000.00----------------1.00-----------1.00--
...............................................................................AGTTTCCTTTGTGTGATTTT....................................................................................................................................................... 201.000.00---------------------1.00---------
.................................................................................TTTCCTTTGTGTGATGAT....................................................................................................................................................... 181.000.00----------------------1.00--------
.......................................................................................................................TCTTCTTCTTCTTTTTTTTCTAT............................................................................................................ 231.000.00-----------------1.00-------------
...........................................................................................................................CTTCTTCTTTTTTTTAGCTG........................................................................................................... 201.000.00---------------1.00---------------
................................................................................................................................................................AGTATTTCCAGAAACGTCA....................................................................... 191.000.00------------1.00------------------
................................................................................................................................................................AGTATTTCCAGAAACGTTC....................................................................... 191.000.00------------------1.00------------
...............................................................................................................AAGAAGAAGAAACATTTT......................................................................................................................... 1870.140.14----0.14--------------------------