ID: uc001xbj.1_intron_1_0_chr14_55310588_r.3p
GENE: GCH1(5)
chr14:55310538-55310787-


(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(6)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TCCGGGAGGATCCAAAGACTCGGGAAGAGTTCCTGACTCTCATTAGGAGCTGAGCTTCATTCAGTGTGTGTGCGTTGGTTGCCGATCGTACTGCCAGTAGCATTGTCTGTCTGTCCGGTCTTGTTTGTACATTCCATTTTCAATTGTTACAGATGTGAACTTTATTCCTTGTCACTAATTATATTTAAAATTATTTCTAGGAAGTCAAATAAATATAATAAAGGGTTGAGCCCTCTACTTTCTTCTTGCC
.................................................................(((.(((((((((...)))).))))))))..(((((((((..((..(((.(((......))).)))...))....)))).)))))....................................................................................................
.................................................................66..........................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................TCACTAATTATATTTAAAATTATTTCTAG..................................................29117.0017.0011.00---4.00----1.00----1.00----------------------
.........ATCCAAAGACTCGGGAAGAGTTCCTGACTCTCATTAGGAGCTGAGCTTCATTCAGTGTGTGTGCGTTGGTTGCCGATCGTACT..............................................................................................................................................................8317.007.00--7.00----------------------------------
......................................................................TGCGTTGGTTGCCGATCGTACTGC............................................................................................................................................................2412.002.00-----2.00-------------------------------
......................................................................................................................................CATTTTCAATTGTTACAGAT................................................................................................2012.002.00------------2.00------------------------
..........................................................................................CTGCCAGTAGCATTGCTTG.............................................................................................................................................192.000.00--------------------1.001.00---------------
............................................................................................................GTCTGTCCGGTCTTGTTTGT..........................................................................................................................2012.002.00-2.00-----------------------------------
...................................................................................................GCATTGTCTGTCTGTCCGGTCTT................................................................................................................................2312.002.00-----2.00-------------------------------
.............................................................................................................................................................................................ATTATTTCTAGGAAGTC............................................1712.002.00--------2.00----------------------------
.................................................................................CCGATCGTACTGCCAGTAG......................................................................................................................................................1912.002.00---------------2.00---------------------
.....GAGGATCCAAAGACTCGGGAAGAG.............................................................................................................................................................................................................................2412.002.00-2.00-----------------------------------
............................................................TCAGTGTGTGTGCGTTGGTTGC........................................................................................................................................................................2211.001.00----------------1.00--------------------
..............................................................................................................................................ATTGTTACAGATGTGAAT..........................................................................................181.000.00-1.00-----------------------------------
..............................................................................TTGCCGATCGTACTGCCA..........................................................................................................................................................1811.001.00-------------------------------1.00-----
..............AAGACTCGGGAAGAGGCT..........................................................................................................................................................................................................................1831.000.33-0.33--------------------------------0.330.33-
.............................................................................................................................................................................ACTAATTATATTTAAAATTATTTCTAG..................................................2711.001.001.00------------------------------------
.............................................................................................................TCTGTCCGGTCTTGTTTGTACA.......................................................................................................................2211.001.00-1.00-----------------------------------
............................................................................................................................................................................CACTAATTATATTTAAAATTATTTCTAG..................................................2811.001.00----1.00--------------------------------
................................................................................................................GTCCGGTCTTGTTTGTACATTCTG..................................................................................................................241.000.00----------1.00--------------------------
..................................................................TGTGTGCGTTGGTTGGGG......................................................................................................................................................................181.000.00-------------------1.00-----------------
......................................................................................................TTGTCTGTCTGTCCGGTC..................................................................................................................................1811.001.00-------------1.00-----------------------
...........................................................................................................................TTTGTACATTCCATTTTCAATTGTT......................................................................................................2511.001.00----------------------------1.00--------
.................................................................GTGTGTGCGTTGGTTGCCGATCGT.................................................................................................................................................................2411.001.00--1.00----------------------------------
...................................................................................................GCATTGTCTGTCTGTCCGGT...................................................................................................................................2011.001.00---------------------------1.00---------
........................................................................................................................................................................................................................................CTCTACTTTCTTCTTTACT191.000.00--------------1.00----------------------
................................................................................................GTAGCATTGTCTGTCTGTCCGGT...................................................................................................................................2311.001.00-1.00-----------------------------------
..............................................................................................................................GTACATTCCATTTTCAATTGTTACAGAT................................................................................................2811.001.00-------------1.00-----------------------
.............................................................CAGTGTGTGTGCGTTGGTTGCCG......................................................................................................................................................................2311.001.00-----------------------------1.00-------
......................................................................................................................................CATTTTCAATTGTTACAGATGTG.............................................................................................2311.001.00----------------------1.00--------------
...............................................................................................AGTAGCATTGTCTGTCTGTCCGGTC..................................................................................................................................2511.001.00---------------------------------1.00---
............................................................................................................................................................................CACTAATTATATTTAAAATTATTCTAG...................................................271.000.00----1.00--------------------------------
..........................................................................................CTGCCAGTAGCATTGCT...............................................................................................................................................171.000.00------------------1.00------------------
..........................................................................................................................................................................................AAAATTATTTCTAGGAAAA.............................................191.000.00-----------------------1.00-------------
...........................................................................................................................................................................TCACTAATTATATTTAAAATTATT.......................................................2411.001.00------1.00------------------------------
...................................................................................................................................................TACAGATGTGAACTTTATTCCTTG...............................................................................2411.001.00------1.00------------------------------
............................................................TCAGTGTGTGTGCGTACGT...........................................................................................................................................................................191.000.00------1.00------------------------------
............................................................................................................................................................................................AATTATTTCTAGGAAGTCA...........................................1911.001.00-1.00-----------------------------------
............................................................................................................................................................................CACTAATTATATTTAAAATTATTTCTAT..................................................281.000.001.00------------------------------------
............................................................................GGTTGCCGATCGTACTGC............................................................................................................................................................1811.001.00--------------------------------1.00----
..............................................................................................................................GTACATTCCATTTTCAATTG........................................................................................................2011.001.00-------1.00-----------------------------
.............................................................................................................................................................AACTTTATTCCTTGTCACTAA........................................................................2111.001.00-------1.00-----------------------------
...........................................................................................................................................................................TCACTAATTATATTTAAAATTATTCTAG...................................................2811.001.00---------1.00---------------------------
....................................................................................................................................................................................................CTAGGAAGTCAAATAAATATA.................................2111.001.00-------------------------1.00-----------
..............................................................................................................................................ATTGTTACAGATGTGAACTTTATTCCTTGTC.............................................................................3111.001.00----------1.00--------------------------
..CGGGAGGATCCAAAGACTCG....................................................................................................................................................................................................................................2011.001.00--------------------------1.00----------
...........................................................................................................................................................................TCACTAATTATATTTAAAATTATTCTGG...................................................2811.001.00-----------------1.00-------------------
..............AAGACTCGGGAAGAG.............................................................................................................................................................................................................................1530.330.33------------------------------------0.33

Antisense strand
TCCGGGAGGATCCAAAGACTCGGGAAGAGTTCCTGACTCTCATTAGGAGCTGAGCTTCATTCAGTGTGTGTGCGTTGGTTGCCGATCGTACTGCCAGTAGCATTGTCTGTCTGTCCGGTCTTGTTTGTACATTCCATTTTCAATTGTTACAGATGTGAACTTTATTCCTTGTCACTAATTATATTTAAAATTATTTCTAGGAAGTCAAATAAATATAATAAAGGGTTGAGCCCTCTACTTTCTTCTTGCC
.................................................................(((.(((((((((...)))).))))))))..(((((((((..((..(((.(((......))).)))...))....)))).)))))....................................................................................................
.................................................................66..........................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................................................TTATTCCTTGTCACTACTGG..................................................................... 207.000.00---7.00---------------------------------
.........................................................................................................................TGTTTGTACATTCCAGGAG.............................................................................................................. 192.000.00------------------------1.00-----1.00------
.................................................................................................................................................................TTATTCCTTGTCACTACTGC..................................................................... 202.000.00-----------2.00-------------------------
.......................................................................................................................................................................................................................................CCTCTACTTTCTTCTAGG. 181.000.00-1.00-----------------------------------
.............................................................................................................................................................AACTTTATTCCTTGTCGGAC......................................................................... 201.000.00-----1.00-------------------------------
..............................................................................................................................................................................................................CCTTTATTATATTTATTT.......................... 1830.330.33-------0.33-----------------------------