ID: uc001xad.2_intron_11_0_chr14_53360146_r.5p
GENE: (3)
chr14:53385641-53385890-


(6)
BRAIN 		(6)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(8)
LIVER 		(1)
OTHER 		(6)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TTTCTCTGATAGAGTCTTCAAAGCTGTTTCTGACATCTGTAAGACTTTTAGTAAGTATTACATAAATTCTTCTTAAAATACGAGTTATGTGATGTACAGATGACCGATGACTGACATAGCTTATCCCAAGGGATGGGGCATGGGCTGAACTATCTGTATATATGTATGTGTGTGAAATTTCTACTTCATTAAAGTTTTTATATTAAGATAAATGCTGGGTTAAGGTGGAACAGGAAGAACCTAGTAGAGA
.......................................................................................................................(((((((....)))))))(((((.((.((....)).))...))))).....................................................................................
.....................................................................................................................118...................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
......................................................................................................................................................TATCTGTATATATGTACG..................................................................................1839.000.0039.00-------------------------------------
...............................................................................................................................................................................................................................GGTGGAACAGGAAGACATC........197.000.00---7.00----------------------------------
.......GATAGAGTCTTCAAAGCT.................................................................................................................................................................................................................................1813.003.00-----2.00------1.00-------------------------
....................................................................................TTATGTGATGTACAGATGACCGATGACTGACA......................................................................................................................................3213.003.00---------2.00------------1.00---------------
............................................................................................................................................TGGGCTGAACTATCTGTA............................................................................................1812.002.00-------------2.00------------------------
.........................GTTTCTGACATCTGTAAGA..............................................................................................................................................................................................................1912.002.00-1.00--1.00---------------------------------
................................ACATCTGTAAGACTTTTA........................................................................................................................................................................................................1812.002.00------2.00-------------------------------
...........................TTCTGACATCTGTAAGACT............................................................................................................................................................................................................1912.002.00--2.00-----------------------------------
........................TGTTTCTGACATCTGTAAGACT............................................................................................................................................................................................................2212.002.00-2.00------------------------------------
............................TCTGACATCTGTAAGACTTT..........................................................................................................................................................................................................2012.002.00-1.001.00-----------------------------------
..........................................................................................................................ATCCCAAGGGATGGGGCATG............................................................................................................2012.002.00-2.00------------------------------------
......................................................................................................................................................TATCTGTATATATGTACT..................................................................................182.000.002.00-------------------------------------
.........................GTTTCTGACATCTGTAAG...............................................................................................................................................................................................................1812.002.00--1.00---------1.00-------------------------
.........................GTTTCTGACATCTGTAAGACT............................................................................................................................................................................................................2112.002.00----1.00-1.00-------------------------------
............AGTCTTCAAAGCTGTTTCTGACATCT....................................................................................................................................................................................................................2611.001.00------------------------------------1.00-
...................AAAGCTGTTTCTGACATCTGTAAGAC.............................................................................................................................................................................................................2611.001.00-----1.00--------------------------------
..TCTCTGATAGAGTCTTCAAAGCT.................................................................................................................................................................................................................................2311.001.00-----1.00--------------------------------
.........................................................................................................................................................................................................................GGTTAAGGTGGAACAGGAAGAACC.........2411.001.00-----------------------------------1.00--
..........................................................................................GATGTACAGATGACCGATGAC...........................................................................................................................................2111.001.00-1.00------------------------------------
......................................................................................................................................................TATCTGTATATATGTATGGAC...............................................................................211.000.00-----------------1.00--------------------
....................AAGCTGTTTCTGACATCTG...................................................................................................................................................................................................................1911.001.00--------1.00-----------------------------
......................GCTGTTTCTGACATCTGTAAGACTTTTA........................................................................................................................................................................................................2811.001.00-1.00------------------------------------
......................GCTGTTTCTGACATCTGTAAGAC.............................................................................................................................................................................................................2311.001.00-------1.00------------------------------
...............................................................................................................................................................................................................ATAAATGCTGGGTTAAGGTG.......................2011.001.00--1.00-----------------------------------
.....................AGCTGTTTCTGACATCTGTAAGACTT...........................................................................................................................................................................................................2611.001.00-1.00------------------------------------
.........................GTTTCTGACATCTGTAAGAC.............................................................................................................................................................................................................2011.001.00---------------1.00----------------------
...............................................................................................................................................................................................................................GGTGGAACAGGAAGAAC..........1711.001.00-----------------------------1.00--------
......................GCTGTTTCTGACATCTGTAAGACTTT..........................................................................................................................................................................................................2611.001.00----------------1.00---------------------
.............................CTGACATCTGTAAGACTT...........................................................................................................................................................................................................1811.001.00-----------------------1.00--------------
....................AAGCTGTTTCTGACATCTGTAAGACTTTT.........................................................................................................................................................................................................2911.001.00-1.00------------------------------------
............................TCTGACATCTGTAAGACTTTTAATA.....................................................................................................................................................................................................2511.001.00--------1.00-----------------------------
..................................................................................................................................................................................................................AATGCTGGGTTAAGGTGGAACAGGAAGA............2811.001.00---------------------1.00----------------
......................................................................................................................................................TATCTGTATATATGTGTT..................................................................................181.000.001.00-------------------------------------
..............................................................................................................................................................................................................................AGGTGGAACAGGAAGAAC..........1811.001.00------------------------------1.00-------
......................................................................................................................................................TATCTGTATATATGTACGT.................................................................................191.000.001.00-------------------------------------
......................................................................................................................................................TATCTGTATATATGTATGTTT...............................................................................211.000.001.00-------------------------------------
.........................GTTTCTGACATCTGTGGAT..............................................................................................................................................................................................................191.000.00------------------1.00-------------------
......................GCTGTTTCTGACATCTGTAAGAATT...........................................................................................................................................................................................................251.000.00---------------------------------1.00----
...............................GACATCTGTAAGACTTTTA........................................................................................................................................................................................................1911.001.00------1.00-------------------------------
......................................................................................................................................................TATCTGTATATATGTACGTC................................................................................201.000.001.00-------------------------------------
......................................................................................................................................................TATCTGTATATATGTACTG.................................................................................191.000.001.00-------------------------------------
....................................................................................................TGACCGATGACTGACATAGCTTA...............................................................................................................................2311.001.00--1.00-----------------------------------
.........................................................................................................................TATCCCAAGGGATGGGGCATG............................................................................................................2111.001.00--1.00-----------------------------------
........................TGTTTCTGACATCTGTAAGACTTTT.........................................................................................................................................................................................................2511.001.00-1.00------------------------------------
......................GCTGTTTCTGACATCTGTAAGACTT...........................................................................................................................................................................................................2511.001.00--------1.00-----------------------------
....................AAGCTGTTTCTGACATCTGT..................................................................................................................................................................................................................2011.001.00----------------------------1.00---------
...................AAAGCTGTTTCTGACATCTGTAAGACTC...........................................................................................................................................................................................................281.000.00--------------------------------1.00-----
..............................................................................................................................................................................................................................AGGTGGAACAGGAAGAA...........1721.001.00----------1.00---------------------------
....................AAGCTGTTTCTGACATCTGTA.................................................................................................................................................................................................................2111.001.00----------1.00---------------------------
............................TCTGACATCTGTAAGACTT...........................................................................................................................................................................................................1911.001.00-1.00------------------------------------
.............................CTGACATCTGTAAGACTTTTAATAC....................................................................................................................................................................................................251.000.00-------------------------------1.00------
.........................GTTTCTGACATCTGTAAGACTTT..........................................................................................................................................................................................................2311.001.00-1.00------------------------------------
.................................................................................................AGATGACCGATGACTGACATAGCTTAT..............................................................................................................................2711.001.00-1.00------------------------------------
.....................AGCTGTTTCTGACATCTGTAAGACT............................................................................................................................................................................................................2511.001.00----1.00---------------------------------
....................AAGCTGTTTCTGACATCTGTAAGACTTT..........................................................................................................................................................................................................2811.001.00-1.00------------------------------------
........................TGTTTCTGACATCTGTAAGAC.............................................................................................................................................................................................................2111.001.00-------------------------1.00------------
.................TCAAAGCTGTTTCTGACATCTGTAAGAC.............................................................................................................................................................................................................2811.001.00-------1.00------------------------------
.......................................................................................................................................................................................................................TGGGTTAAGGTGGAACAGGAAGA............2311.001.00---------------------------1.00----------
..............................TGACATCTGTAAGACTTTTA........................................................................................................................................................................................................2011.001.00--------------1.00-----------------------
...................................................................................GTTATGTGATGTACAGATGACCGATGACTGACA......................................................................................................................................3311.001.00------------------------1.00-------------
........................TGTTTCTGACATCTGTAAGACTTT..........................................................................................................................................................................................................2411.001.00-----------1.00--------------------------
...........................................................................................................................TCCCAAGGGATGGGGCATG............................................................................................................1911.001.00--1.00-----------------------------------
....................................CTGTAAGACTTTTAGTAAGTA.................................................................................................................................................................................................2111.001.00--------------------------1.00-----------
............................TCTGACATCTGTAAGACT............................................................................................................................................................................................................1811.001.00----1.00---------------------------------
......................................................................................................................................................TATCTGTATATATGTACTTG................................................................................201.000.001.00-------------------------------------
..........................................................................................................................................................................................................TTAAGATAAATGCTGGG...............................1711.001.00--------------------1.00-----------------
................................................................................................................................AGGGATGGGGCATGGGCTGAACTATCT...............................................................................................2711.001.00--1.00-----------------------------------
....................AAGCTGTTTCTGACATCT....................................................................................................................................................................................................................1811.001.00-----------1.00--------------------------
....................AAGCTGTTTCTGACATCTGTAAGACT............................................................................................................................................................................................................2611.001.00-1.00------------------------------------
................................................................................................CAGATGACCGATGACTGA........................................................................................................................................1811.001.00-------------------1.00------------------
..............................................................TAAATTCTTCTTAAAATGATT.......................................................................................................................................................................211.000.00-------1.00------------------------------
............................TCTGACATCTGTAAGACTTTTA........................................................................................................................................................................................................2211.001.00-------------------------------------1.00
.......................................................................................................................................................................................................................TGGGTTAAGGTGGAACAGGAAGAA...........2411.001.00-1.00------------------------------------
.................................................................................................AGATGACCGATGACTGAC.......................................................................................................................................1811.001.00--1.00-----------------------------------
................................................................................................................................AGGGATGGGGCATGGGCT........................................................................................................1820.500.50--------------0.50-----------------------
.....................AGCTGTTTCTGACATCTGT..................................................................................................................................................................................................................1920.500.50---------------0.50----------------------

Antisense strand
TTTCTCTGATAGAGTCTTCAAAGCTGTTTCTGACATCTGTAAGACTTTTAGTAAGTATTACATAAATTCTTCTTAAAATACGAGTTATGTGATGTACAGATGACCGATGACTGACATAGCTTATCCCAAGGGATGGGGCATGGGCTGAACTATCTGTATATATGTATGTGTGTGAAATTTCTACTTCATTAAAGTTTTTATATTAAGATAAATGCTGGGTTAAGGTGGAACAGGAAGAACCTAGTAGAGA
.......................................................................................................................(((((((....)))))))(((((.((.((....)).))...))))).....................................................................................
.....................................................................................................................118...................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
...............................................................................................................................................................................AATTTCTACTTCATTAGTT........................................................ 191.000.00----------------------------------1.00---
.............................................................................................................................................................ATATATGTATGTGTGTGCTAC........................................................................ 211.000.001.00-------------------------------------
........................................................................................................................................................TCTGTATATATGTATGTGCT.............................................................................. 201.000.001.00-------------------------------------