| (1) BRAIN | (7) CELL-LINE | (1) CERVIX | (6) HELA | (1) LIVER | (4) OTHER | (9) SKIN | (1) XRN.ip |
| TTGTTTTACTTCAGTGGTATGAGCCAATGCAGAAATTCATGTTGATAAAGGTATATATTATTTTGTTCACATTTTTTTCCTTTAGAAAACACTAGTGTATAACTGAAGCTAAAATTAGCAGATCCCAATACTACTATCTAGGGTCAGAACATTTATAGTTATTTGTAGTTGTTTATTTGATTTAGAGGTTTTTGTGTTCTTAGGATTTACTCTTTAACTGATAATAAACTTCCAGAACCATCAGTCATAAAGATTAATATGGCTAATTATCTAAAACACATTTTTATAGAACATTCATCCTTCTTATCATCTTAGAGGTAATCCTTTTTAGAACTAGATAAATGAAGAAGATAGGAGTCTTTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGCAGCACTTTGATTTTCCTTTGCCAAGTCCTTTGAATGTTTTTGAAATGCTGGT .......................................................................................................................................................................................................................................................................................................................................................((((((((((((((((...(((((((......))))))).......(((..(((((...)))))..)))..))))))......))))))))))...................................................... ....................................................................................................................................................................................................................................................................................................................................................341................................................................................................440................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR029124(GSM416753) HeLa. (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | GSM532874(GSM532874) G699T. (cervix) | SRR189785 | SRR330897(SRX091735) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR039637(GSM518474) THP1_total_sRNAs. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................................................................................................................................................TTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGCAG.................................................. | 80 | 1 | 9.00 | 9.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................TTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGCAGT................................................. | 81 | 1 | 9.00 | 9.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................TTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGC.................................................... | 78 | 1 | 8.00 | 8.00 | 5.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................TTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGCAGA................................................. | 81 | 1 | 5.00 | 9.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TTTTACTTCAGTGGTATGAGCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TTTGATTTAGAGGTTTTTGTGTTCTCAGG.............................................................................................................................................................................................................................................................................................. | 29 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTATTTTTTTTAGG................................................... | 19 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................TGAGCCAATGCAGAAATTCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................TATGAGCCAATGCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTTATTTTTTTTTTT................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............GGTATGAGCCAATGCAGAAATTCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TTTGATTTAGAGGTTTTTGTGTTCTT................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTATTGTTTATATG.......................................................... | 18 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................ATGCAGAAATTCATGTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCTGAATTATGGCTCTAT.................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................................................TTGATTTAGAGGTTTTTGTGTTCTTAGG.............................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCACTTTGATAACG..................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................GTTATTTGTAGTTGTATTG.......................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................TGAGCCAATGCAGAAATTCATGTTGATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGCAGCACTCGGC.......................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......ACTTCAGTGGTATGAGCCAATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................TATGAATGGGGAGATTGTTTCTGAA................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGTTTCTGAATTATGG.......................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................GGTATGAATGGGGAGATTG........................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................................................................................................................................................................................................................................CTTCTTATCATCTTATTT............................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................TATGAGCCAATGCAGAAATTCATGTTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................ATGCAGAAATTCATGTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................ATATATTATTTTGTTCACATTTTTTTCCTTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................... | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................GGGAGATTGTTTCTGAATTATGGC......................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................ATGCAGAAATTCATGTTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................ATGAGCCAATGCAGAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTTTTGAAATGCTGGT | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................ATATATTATTTTGTTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGTTTATTTTTTTTGCAG.................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................AAGAAGATAGGAGTCTTTCTGTTGAC........................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................CCAGAACCATCAGTCAT.................................................................................................................................................................................................................................................. | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| ........................CAATGCAGAAATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTATTTTTTTTGCA................................................... | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| TTGTTTTACTTCAGTGGTATGAGCCAATGCAGAAATTCATGTTGATAAAGGTATATATTATTTTGTTCACATTTTTTTCCTTTAGAAAACACTAGTGTATAACTGAAGCTAAAATTAGCAGATCCCAATACTACTATCTAGGGTCAGAACATTTATAGTTATTTGTAGTTGTTTATTTGATTTAGAGGTTTTTGTGTTCTTAGGATTTACTCTTTAACTGATAATAAACTTCCAGAACCATCAGTCATAAAGATTAATATGGCTAATTATCTAAAACACATTTTTATAGAACATTCATCCTTCTTATCATCTTAGAGGTAATCCTTTTTAGAACTAGATAAATGAAGAAGATAGGAGTCTTTCTGTTGACTTTATTCAACAGTGGTATGAATGGGGAGATTGTTTCTGAATTATGGCTCTATTGTTTATTTTTTTTGCAGCACTTTGATTTTCCTTTGCCAAGTCCTTTGAATGTTTTTGAAATGCTGGT .......................................................................................................................................................................................................................................................................................................................................................((((((((((((((((...(((((((......))))))).......(((..(((((...)))))..)))..))))))......))))))))))...................................................... ....................................................................................................................................................................................................................................................................................................................................................341................................................................................................440................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR029124(GSM416753) HeLa. (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | GSM532874(GSM532874) G699T. (cervix) | SRR189785 | SRR330897(SRX091735) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR039637(GSM518474) THP1_total_sRNAs. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................................................................................................................GAAGAAGATAGGAGTTGCA................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TATTTGATTTAGAGGCG............................................................................................................................................................................................................................................................................................................ | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTGATTTTCCTTCTGT.............................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................GTTTTTGTGTTCTTAATAG............................................................................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................TGTTCACATTTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |