ID: uc001wtk.1_intron_7_0_chr14_36192471_r.5p
GENE: RALGAPA1(9)
chr14:36194030-36194279-


(1)
AGO2.ip 		(3)
BREAST 		(7)
CELL-LINE 		(6)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(16)
SKIN

Sense strand
GGAAAAAAAATATGACCTTGGCAGGTCGACTTGCAGGACCACTTTTCCAGGCAATAAAAATAAATAAATAGATGAATAGCTGGATAGATATGGGTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTTTTTAAAATTCATTGAACCCTGAACTTGTTACCAGAAAAAAAAGTTTTAAATTAGAGATTATTTCTTATTTATTAAGGGATCTTTTGTAGAGCTAACTTAAAAGTTGCTCATCTAAATAAGCTAT
..........................................................................................................((((....(((((...((((....))))....)))))...))))....................................................................................................
......................................................................................................103....................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR189785SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
........................................................................................................................................ATTGAACCCTGAACTCTG................................................................................................1812.000.00----2.00-1.002.00--2.00--2.00----1.00---1.00-------1.00--------
.......................................................................................................................................CATTGAACCCTGAACTCTG................................................................................................1910.000.00----2.00----2.00----2.00--------1.001.00---1.00---1.00------
......................................................................................................................................TCATTGAACCCTGAACTCTG................................................................................................205.000.00----1.00-2.00---------1.00--------------1.00-------
....................................................................................................TGTTTTGTTTTGTTGTTTGTTTGTTTTCT.........................................................................................................................295.000.005.00--------------------------------------
...........................................................................ATAGCTGGATAGATATGGGTTGTTTG.....................................................................................................................................................262.000.002.00--------------------------------------
...............................................................................................TGTTTTGTTTTGTTTTGTTGTTAAGC.................................................................................................................................262.000.002.00--------------------------------------
...................................................................................................TTGTTTTGTTTTGTTGTTTGTTTGTTC............................................................................................................................272.000.002.00--------------------------------------
........................................................................................................TTGTTTTGTTGTTTGTTTGTTTTTGAGG......................................................................................................................282.000.001.001.00-------------------------------------
...............................................................................................TGTTTTGTTTTGTTTTGTTGTTTCTTG................................................................................................................................272.000.00-2.00-------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTTGTTGT......................................................................................................................................2612.002.001.001.00-------------------------------------
...........................................................................................................TTTTGTTGTTTGTTTGTTTTACC........................................................................................................................232.000.00-2.00-------------------------------------
.......................................................................................ATATGGGTTGTTTTGTTTTGTTTG...........................................................................................................................................242.000.00-2.00-------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTTTC..........................................................................................................................312.000.00-2.00-------------------------------------
.........................................................................................................TGTTTTGTTGTTTGTTTGTTTTTGG........................................................................................................................252.000.00-2.00-------------------------------------
.........................................................................................................TGTTTTGTTGTTTGTTTGTTTTTCG........................................................................................................................252.000.002.00--------------------------------------
...........................................................................................................................................................................................................................................ATCTAAATAAGCTATCGGG192.000.00-----------------------------1.00---1.00-----
.......................................................................................................TTTGTTTTGTTGTTTGTTTGTCTTT..........................................................................................................................252.000.002.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTTTTC.........................................................................................................................322.000.002.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTCC..................................................................................................................................231.000.001.00--------------------------------------
.....................................................................................AGATATGGGTTGTTTTGTTTTGTTTTGTCG.......................................................................................................................................301.000.001.00--------------------------------------
............................................................................................................TTTGTTGTTTGTTTGTTTTAGGA.......................................................................................................................231.000.00-1.00-------------------------------------
...........................................................................................................TTTTGTTGTTTGTTTGTTTTTTTGCT.....................................................................................................................261.000.001.00--------------------------------------
........................................................................TGAATAGCTGGATAGATATGG.............................................................................................................................................................2111.001.00--------------------------1.00------------
..................................................................................................TTTGTTTTGTTTTGTTGTTTGTTTGTTCT...........................................................................................................................291.000.00-1.00-------------------------------------
.........................................................................................ATGGGTTGTTTTGTTTTGTTTC...........................................................................................................................................221.000.00-1.00-------------------------------------
..................................................................................................TTTGTTTTGTTTTGTTGTTTGTTTGAT.............................................................................................................................271.000.001.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTTCTT.........................................................................................................................321.000.00-1.00-------------------------------------
....................................................................................................TGTTTTGTTTTGTTGTTTGTTTGCCGG...........................................................................................................................271.000.00-1.00-------------------------------------
......................................................................................................TTTTGTTTTGTTGTTTGTTCTGT.............................................................................................................................231.000.001.00--------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTTGTTGAAG....................................................................................................................................281.000.00-1.00-------------------------------------
.........................................................................................................TGTTTTGTTGTTTGTTTGTTTTCTGA.......................................................................................................................261.000.001.00--------------------------------------
...............................................................................................TGTTTTGTTTTGTTTTGTTGGTC....................................................................................................................................231.000.001.00--------------------------------------
...............................................................................CTGGATAGATATGGGCTGA........................................................................................................................................................191.000.00------------1.00--------------------------
....................................................................................................TGTTTTGTTTTGTTGTTTGGAG................................................................................................................................221.000.001.00--------------------------------------
....................................................................................................TGTTTTGTTTTGTTGTTTGGGCT...............................................................................................................................231.000.00------------1.00--------------------------
.......................................................................................ATATGGGTTGTTTTGTTTTGCTT............................................................................................................................................231.000.00-1.00-------------------------------------
.......................................................................................................TTTGTTTTGTTGTTTGTTTGTTTTTG.........................................................................................................................261.000.00-1.00-------------------------------------
.........................................................................................................TGTTTTGTTGTTTGTTTGTTTGGAG........................................................................................................................251.000.001.00--------------------------------------
..................................................................................................TTTGTTTTGTTTTGTTGTTCTGG.................................................................................................................................231.000.001.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTCTTT.........................................................................................................................321.000.001.00--------------------------------------
...................................................................................................TTGTTTTGTTTTGTTGTTTGTCGAG..............................................................................................................................251.000.00-1.00-------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTGGTT..........................................................................................................................................221.000.00----------------------------------1.00----
.................TTGGCAGGTCGACTTGCAGGAC...................................................................................................................................................................................................................2221.001.00--------------------1.00------------------
........................................................................................................TTGTTTTGTTGTTTGTTTGTTTTACC........................................................................................................................261.000.00-1.00-------------------------------------
.........................................................................................ATGGGTTGTTTTGTTTTGTTTTGC.........................................................................................................................................241.000.001.00--------------------------------------
..........................................................................AATAGCTGGATAGATATGGGTTTTG.......................................................................................................................................................251.000.001.00--------------------------------------
.........................................................................................ATGGGTTGTTTTGTTTTGTTTCGC.........................................................................................................................................241.000.001.00--------------------------------------
....................................................................................................TGTTTTGTTTTGTTGTTTGTTTGTTTTC..........................................................................................................................281.000.001.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGGTTC...............................................................................................................................261.000.00-1.00-------------------------------------
............................................................................................................TTTGTTGTTTGTTTGTTTTTTTGCC.....................................................................................................................251.000.001.00--------------------------------------
......................................................................................................TTTTGTTTTGTTGTTTGTTTGTTTTTCGAG......................................................................................................................301.000.001.00--------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTCGAG........................................................................................................................................241.000.00-1.00-------------------------------------
...............................................................................................TGTTTTGTTTTGTTTTGTTGTTTCC..................................................................................................................................251.000.001.00--------------------------------------
........................................................................................................TTGTTTTGTTGTTTGTTTGTTTTCT.........................................................................................................................251.000.00-1.00-------------------------------------
..............................................................................................TTGTTTTGTTTTGTTTTGTTGGACC...................................................................................................................................251.000.00-1.00-------------------------------------
....................................................................................................................................................................................................ATTAAGGGATCTTTTGTAGAGCTAACTT..........................2811.001.00-------------------1.00-------------------
............................................................................................GGTTGTTTTGTTTTGTTTTGCTTC......................................................................................................................................241.000.00-1.00-------------------------------------
.....................................................................................AGATATGGGTTGTTTTGTTTTGTC.............................................................................................................................................241.000.00-1.00-------------------------------------
............................................................................................GGTTGTTTTGTTTTGTTTTGTTGTTGTGG.................................................................................................................................291.000.001.00--------------------------------------
.........................................................................................................TGTTTTGTTGTTTGTTTGTTTTCC.........................................................................................................................241.000.001.00--------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTGGAG........................................................................................................................................241.000.00-1.00-------------------------------------
........................................................................................................TTGTTTTGTTGTTTGTTTGTCATG..........................................................................................................................241.000.001.00--------------------------------------
..........................................................................................................GTTTTGTTGTTTGTTTGTTTTACC........................................................................................................................241.000.001.00--------------------------------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTTTCTT.......................................................................................................................................251.000.001.00--------------------------------------
..........................................................................................................................................................................................................................................CATCTAAATAAGCTATCG181.000.00---------------------------1.00-----------
.......................................................................ATGAATAGCTGGATAGATATGG.............................................................................................................................................................2211.001.00-------------------------1.00-------------
..........................................................................................TGGGTTGTTTTGTTTTGTTTTGTTCT......................................................................................................................................261.000.00-1.00-------------------------------------
..................................................................................................TTTGTTTTGTTTTGTTGTTATTC.................................................................................................................................231.000.00-1.00-------------------------------------
........................................................................................TATGGGTTGTTTTGTTTTGTTTTGTTA.......................................................................................................................................271.000.001.00--------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTTCT..........................................................................................................................311.000.00-1.00-------------------------------------
............................................................................................................TTTGTTGTTTGTTTGTTTTTTTGC......................................................................................................................241.000.001.00--------------------------------------
........................................................................................TATGGGTTGTTTTGTTTTGTTTTGTTGC......................................................................................................................................281.000.001.00--------------------------------------
.......................................................................................ATATGGGTTGTTTTGTTTTGTTTTGC.........................................................................................................................................261.000.001.00--------------------------------------
......................................................................................................TTTTGTTTTGTTGTTTGTTTGTTTTTGAG.......................................................................................................................291.000.00---------------1.00-----------------------
...........................................................................................................TTTTGTTGTTTGTTTGTTCTTG.........................................................................................................................221.000.001.00--------------------------------------
...........................................................................................................TTTTGTTGTTTGTTTGTTTTTCCC.......................................................................................................................241.000.00-1.00-------------------------------------
.......................................................................................ATATGGGTTGTTTTGTTTTGTTTTGTTTT......................................................................................................................................291.000.00-1.00-------------------------------------
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGGTGA...............................................................................................................................261.000.00-1.00-------------------------------------
........................................................................................................TTGTTTTGTTGTTTGTTTGTTTAACC........................................................................................................................261.000.001.00--------------------------------------
.......................................................................................ATATGGGTTGTTTTGTTTTGTTTTGTTG.......................................................................................................................................2811.001.00-1.00-------------------------------------
......................................................................................................................................................................................................TAAGGGATCTTTTGTAGA..................................1811.001.00-------1.00-------------------------------
......................AGGTCGACTTGCAGG.....................................................................................................................................................................................................................1520.500.50---------------------0.50-----------------
..................................................................................GATAGATATGGGTTGTT.......................................................................................................................................................1720.500.50-----------------------------------0.50---
..........................CGACTTGCAGGACCACTTTTCCAG........................................................................................................................................................................................................2420.500.50------------------------------------0.50--
........................................................................................TATGGGTTGTTTTGTTTTGTTTTG..........................................................................................................................................2420.500.50-0.50-------------------------------------
........................................................................................TATGGGTTGTTTTGTTTTGTTT............................................................................................................................................2220.500.500.50--------------------------------------
.....................CAGGTCGACTTGCAG......................................................................................................................................................................................................................1520.500.50---------------------0.50-----------------
...............................TGCAGGACCACTTTT............................................................................................................................................................................................................1560.330.33-----------------------------------0.17--0.17
.................................................................................................TTTTGTTTTGTTTTGTTGTTTGTTTGTTTTTT.........................................................................................................................3260.330.33-0.33-------------------------------------
........................................................................................................................................................................................................AGGGATCTTTTGTAGA..................................1640.250.25-------------------------------------0.25-
...................................................................................................TTGTTTTGTTTTGTTGTTTGTTTGTTTTTT.........................................................................................................................3060.170.170.17--------------------------------------

Antisense strand
GGAAAAAAAATATGACCTTGGCAGGTCGACTTGCAGGACCACTTTTCCAGGCAATAAAAATAAATAAATAGATGAATAGCTGGATAGATATGGGTTGTTTTGTTTTGTTTTGTTGTTTGTTTGTTTTTTAAAATTCATTGAACCCTGAACTTGTTACCAGAAAAAAAAGTTTTAAATTAGAGATTATTTCTTATTTATTAAGGGATCTTTTGTAGAGCTAACTTAAAAGTTGCTCATCTAAATAAGCTAT
..........................................................................................................((((....(((((...((((....))))....)))))...))))....................................................................................................
......................................................................................................103....................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR189785SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.....................................................ATAAAAATAAATAAATAGATG................................................................................................................................................................................ 213.000.00--1.00-----2.00------------------------------
.......................................................AAAAATAAATAAATAGATGCAG............................................................................................................................................................................. 223.000.00--2.00--1.00---------------------------------
.........................................................AAATAAATAAATAGATGCAAG............................................................................................................................................................................ 212.000.00--1.001.00-----------------------------------
.......................................................AAAAATAAATAAATAGACCCA.............................................................................................................................................................................. 212.000.00-----------2.00---------------------------
...................................................CATCTATTTATTTATTTTTATTG................................................................................................................................................................................ 2321.501.50---1.50-----------------------------------
....................................................AATAAAAATAAATAAATAGATGAATATAG......................................................................................................................................................................... 291.000.00---1.00-----------------------------------
.......................................................AAAAATAAATAAATAGATGAATATCAG........................................................................................................................................................................ 271.000.00--1.00------------------------------------
.......................................................AAAAATAAATAAATAGATCTTG............................................................................................................................................................................. 221.000.00--1.00------------------------------------
...........................................................................................................................................................ACCAGAAAAAAAAGTTCAGG........................................................................... 201.000.001.00--------------------------------------
.......................................................AAAAATAAATAAATAGATGAATAAG.......................................................................................................................................................................... 251.000.00---1.00-----------------------------------
....................................................AATAAAAATAAATAAATAGATTCT.............................................................................................................................................................................. 241.000.00---------------1.00-----------------------
......................................................TAAAAATAAATAAATAGATGATAG............................................................................................................................................................................ 241.000.00---1.00-----------------------------------
....................................................AATAAAAATAAATAAATAGATGAATATA.......................................................................................................................................................................... 281.000.00-----1.00---------------------------------
.........................................................AAATAAATAAATAGATGCTTG............................................................................................................................................................................ 211.000.00---1.00-----------------------------------
.............................................................AAATAAATAGATGAATTAAG......................................................................................................................................................................... 201.000.00---1.00-----------------------------------
.......................................................AAAAATAAATAAATAGATTTTC............................................................................................................................................................................. 221.000.001.00--------------------------------------
...........................................................................................GGGTTGTTTTGTTTTGTTTTGTTGCAAG................................................................................................................................... 281.000.00-----------------1.00---------------------
..........................................................AATAAATAAATAGATCCTT............................................................................................................................................................................. 191.000.00--1.00------------------------------------
.............................................................AAATAAATAGATGAATAGTTG........................................................................................................................................................................ 211.000.00--1.00------------------------------------
.......................................................AAAAATAAATAAATAGATGTATT............................................................................................................................................................................ 231.000.00-----1.00---------------------------------
.......................................................AAAAATAAATAAATAGATTATG............................................................................................................................................................................. 221.000.00--1.00------------------------------------
........................................................AAAATAAATAAATAGATGCCAG............................................................................................................................................................................ 221.000.00--1.00------------------------------------
.........................................................AAATAAATAAATAGATGCAAT............................................................................................................................................................................ 211.000.00--1.00------------------------------------
...........................................................ATAAATAAATAGATGACTAG........................................................................................................................................................................... 201.000.00-----1.00---------------------------------
....................................................AATAAAAATAAATAAATAGATGAATATG.......................................................................................................................................................................... 281.000.00---1.00-----------------------------------
....................................................AATAAAAATAAATAAATAGATGTTA............................................................................................................................................................................. 250.330.00---0.33-----------------------------------
....................................................AATAAAAATAAATAAATAGATGATAG............................................................................................................................................................................ 260.330.00--------0.33------------------------------
....................................................CATCTATTTATTTATTTTTATT................................................................................................................................................................................ 2230.330.33--------0.33------------------------------