ID: uc001wtk.1_intron_5_0_chr14_36169509_r.3p
GENE: RALGAPA1(11)
chr14:36169459-36169708-


(9)
CELL-LINE
(3)
HEART
(1)
HELA
(1)
LIVER
(3)
OTHER
(4)
SKIN

Sense strand
TATTCAAAATGTTGTGTGTGTTCTCTGATTTCTTTTCTTACAGCTTGCCAGTATTTGCCGTGCTGAAATGTTTTAATTTATAATTTCCTTCCTTTGTACCTTTTAGTTTTCTCTGTTGCTGCTTTTTCTGTGACACGAGCCTTTCATTATAGTCACTCTTCTTTTTTCCTTCCCCACTTCTTTCTTTTCCTTTTTTAAAGCCATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATA
...........................................................((((((.((((........(((((..........)))))............(((((((((..........)))))).))).....)))).))).)))..............................................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................................................................CTTTCTTTTCCTTTTTTCCAG..................................................2167.000.0022.0019.0014.0010.00----------1.00--1.00---
.............................................................................................................................................................CTTCTTTTTTCCTTCCCCACTTCTTTCTTTT..............................................................3112.002.00-------2.00-------------
................................................................................................................................................................................................................................AATGTGCTCTGCCATTCAC.......192.000.00-----2.00---------------
...................................................................................................................................................................................CTTTCTTTTCCTTTTTTCCAT..................................................212.000.00--2.00------------------
...................................................................................................................................................................................CTTTCTTTTCCTTTTTTATAG..................................................212.000.002.00--------------------
.................................................................................................................................................................................TTCTTTCTTTTCCTTTTTTCTG...................................................221.000.001.00--------------------
...............................................................................................................................................................................ACTTCTTTCTTTTCCTTG.........................................................181.000.00----1.00----------------
...............................................................................................................................................................................ACTTCTTTCTTTTCCTTTTTTCAGG..................................................251.000.00----1.00----------------
.................................................................................................................................................................................TTCTTTCTTTTCCTTTTTTAG....................................................211.000.00-1.00-------------------
................................................................................................................................................................................CTTCTTTCTTTTCCTTTGTG......................................................201.000.00----1.00----------------
...............................................................................................................................................................................ACTTCTTTCTTTTCCTTTCTTT.....................................................221.000.00-1.00-------------------
......................................................................................................................................................................................TCTTTTCCTTTTTTAAACTAG...............................................211.000.00-1.00-------------------
........................................................GCCGTGCTGAAATGTCTGC...............................................................................................................................................................................191.000.00--------1.00------------
.................................................................................................................................................................................TTCTTTCTTTTCCTTTGGTT.....................................................201.000.00----1.00----------------
.....................................................................................TCCTTCCTTTGTACCTTTTAGTT..............................................................................................................................................2311.001.00------------1.00--------
..................................................................................................................................................................................TCTTTCTTTTCCTTTTTTAG....................................................201.000.00-1.00-------------------
........................................................................................................................................................................................................................CATTGGTGAATGTGCTCTGCCATCGGC.......2711.001.00-----------1.00---------
..................................................................................................................................................................................TCTTTCTTTTCCTTTTTTATG...................................................211.000.001.00--------------------
................................................................................................................................................................................CTTCTTTCTTTTCCTTTTAG......................................................201.000.001.00--------------------
...............................................................................................................TCTGTTGCTGCTTTTCTA.........................................................................................................................181.000.00---------------1.00-----
............................................................................................................................................................................................................................GGTGAATGTGCTCTGCCATCGGCC......2411.001.00----------------1.00----
................................................................................................................................................................................CTTCTTTCTTTTCCTTTTTTCCG...................................................231.000.00-1.00-------------------
...................................................................................................................................................................................CTTTCTTTTCCTTTTTTCCA...................................................201.000.00-1.00-------------------
.............................................................................................................................................................................................................................GTGAATGTGCTCTGCC.............1630.330.33-------------------0.33-
.......................................................................................................................................................................................CTTTTCCTTTTTTAAAGC.................................................1830.330.33------------------0.33--
.............................................................................................................................................................CTTCTTTTTTCCTTCCCC...........................................................................1850.200.20--------------------0.20
............................................................................................................................................................................................................................GGTGAATGTGCTCTG...............1560.170.17-----0.17---------------

Antisense strand
TATTCAAAATGTTGTGTGTGTTCTCTGATTTCTTTTCTTACAGCTTGCCAGTATTTGCCGTGCTGAAATGTTTTAATTTATAATTTCCTTCCTTTGTACCTTTTAGTTTTCTCTGTTGCTGCTTTTTCTGTGACACGAGCCTTTCATTATAGTCACTCTTCTTTTTTCCTTCCCCACTTCTTTCTTTTCCTTTTTTAAAGCCATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATA
...........................................................((((((.((((........(((((..........)))))............(((((((((..........)))))).))).....)))).))).)))..............................................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................GAAATGTTTTAATTTATCT....................................................................................................................................................................... 191.000.00---------1.00-----------
....................................................ATTTGCCGTGCTGAAATTG................................................................................................................................................................................... 191.000.00------1.00--------------
.....................................................TTTGCCGTGCTGAAAATTT.................................................................................................................................................................................. 191.000.00------1.00--------------
..................................................................................................................................................................................TCTTTCTTTTCCTTTTTTAAG................................................... 211.000.00----------1.00----------
...................................................................................................................................................................................CTTTCTTTTCCTTTTTTTCGG.................................................. 211.000.00-------------1.00-------