ID: uc001wrz.2_intron_4_0_chr14_34419959_r
GENE: (1)
chr14:34419909-34420178-


(2)
AGO2.ip 		(3)
BRAIN 		(5)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(7)
HEART 		(4)
HELA 		(3)
OTHER 		(1)
RRP40.ip 		(25)
SKIN 		(1)
XRN.ip

Sense strand
GCTCCGCACCACTCCCGCTGGTTCCCGAAGGCAGATCCCTTCTCCCGAGAGTTGCGAGAAACTTTCCCTTGTCCCCGACGCTGCAGCGGCTCGGGTACCGTGGCAGCCGCAGGTTTCTGAACCCCGGGCCACGCTCCCCGCGCCTCGGCTTCGCGCTCGTGTAGATCGTTCCCTCTCTGGTTGCACGCTGGGGATCCCGGACCTCGATTCTGCGGGCGAGATGCCCCTGGGACACATCATGAGGCTGGACCTGGAGAAAATTGCCCTGGA
.........................................................................................................................................................(((((((...(((((.(((.((((..((.....))..))))....)))...)))))..)))))))....................................................
..................................................................................................................................................147......................................................................220................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................................................................GACCTCGATTCTGCGGGCGAGA.................................................2218.008.00-8.00---------------------------------------------------------------
.......................................................................................................................................................CGCGCTCGTGTAGATCG......................................................................................................1715.005.004.00----------------1.00-----------------------------------------------
..........................................................................................................................................................................CCCTCTCTGGTTGCACGCTGGGGATCCCGGACCTCGATTCTGCGGGCGAGATGCCCCTGGGA......................................6213.003.00-------3.00---------------------------------------------------------
................................................................................................................................................................................CTGGTTGCACGCTGGGGA............................................................................1813.003.003.00----------------------------------------------------------------
....................................................................................................................................................................ATCGTTCCCTCTCTGGTTGCACG...................................................................................2312.002.00------------------2.00----------------------------------------------
..................................................................................................................................................................................................................................CTGGGACACATCATGAGGCTGGAC....................2412.002.00--------2.00--------------------------------------------------------
.......................................................................................................................................................................................................................................ACACATCATGAGGCTGGACCTGG................2312.002.00---------------------------1.00------------------------1.00------------
...............................................................................................................................................................TGTAGATCGTTCCCTCTCTGGTTGCA.....................................................................................2612.002.00------2.00----------------------------------------------------------
...........................................................AACTTTCCCTTGTCCCCGACGCTGC..........................................................................................................................................................................................2512.002.00---2.00-------------------------------------------------------------
................................................................................................................................................TCGGCTTCGCGCTCGTGTAGATC.......................................................................................................2312.002.00---1.00-------------------------------------------1.00-----------------
............................................................................................................................................................................................................................................TCATGAGGCTGGACCTGG................1821.501.501.50----------------------------------------------------------------
..............................................................................................................................................................................................................................................ATGAGGCTGGACCTGG................1651.401.40--------0.20------------------------------------------------0.40---0.200.200.200.20
..........ACTCCCGCTGGTTCCCGAAGGCAGAT..........................................................................................................................................................................................................................................2611.001.00----------------------------------------1.00------------------------
...................................................................................................................................................................................................................................................GCTGGACCTGGAGAAAATTGCCC....2311.001.00-----------------1.00-----------------------------------------------
.........................................CTCCCGAGAGTTGCGAGAA..................................................................................................................................................................................................................1911.001.00---------------------------------1.00-------------------------------
......................................................................GTCCCCGACGCTGCAGCGGCTCTGGG..............................................................................................................................................................................261.000.00----------------------------------1.00------------------------------
....................................................................................AGCGGCTCGGGTACCGTGGCAG....................................................................................................................................................................2211.001.00------------------------------------1.00----------------------------
..............................................................................................................................................................GTGTAGATCGTTCCCTCTCTG...........................................................................................2111.001.00--------------1.00--------------------------------------------------
.........................................................................................................................................................CGCTCGTGTAGATCGTTCC..................................................................................................1911.001.00----------------------1.00------------------------------------------
.....................................................................TGTCCCCGACGCTGCCGTC......................................................................................................................................................................................191.000.00-------------1.00---------------------------------------------------
...........................................CCCGAGAGTTGCGAGAAA.................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00----------------
...............................................................................................................................................................................TCTGGTTGCACGCTGGGGA............................................................................1911.001.00----------------1.00------------------------------------------------
...........................................................................................................................................................................................................TCGATTCTGCGGGCGAGA.................................................1811.001.00-------------------------------------------1.00---------------------
..................................................................................................................................................................................GGTTGCACGCTGGGGATCCCGGACCCCG................................................................281.000.00------------------------------------------1.00----------------------
...............................................................................................................................GCCACGCTCCCCGCGCCTCGGC.........................................................................................................................2211.001.00------------1.00----------------------------------------------------
................................................................................................................................................TCGGCTTCGCGCTCGTGTAGATCGTTCC..................................................................................................2811.001.00----1.00------------------------------------------------------------
..............................................................................................................................................................................................................................................ATGAGGCTGGACCTGGAGAAAAA.........231.000.00--------------------------------1.00--------------------------------
..............................................................................................................................................................................CTCTGGTTGCACGCTGGGGTT...........................................................................211.000.00------------------------------1.00----------------------------------
...................................................................................................................................................................................................CCCGGACCTCGATTCTGC.........................................................1811.001.00------1.00----------------------------------------------------------
................................................................................................................................................................GTAGATCGTTCCCTCTCTGGTTG.......................................................................................2311.001.00-----------1.00-----------------------------------------------------
.....................................................................................................................................................................TCGTTCCCTCTCTGGTTGC......................................................................................1911.001.00--------------------------------------------1.00--------------------
......................................................................................CGGCTCGGGTACCGTGGCAGCCGTT...............................................................................................................................................................251.000.00--------------------------------------------------------1.00--------
....................................................................................................................................................................................TTGCACGCTGGGGATCCCGGACCCCG................................................................261.000.00---------------------------------------1.00-------------------------
.................................................................................................................................................................................................................................................AGGCTGGACCTGGAGAAAATTGCCC....2511.001.00---------1.00-------------------------------------------------------
................................................................................................................GTTTCTGAACCCCGGGCCAC..........................................................................................................................................2011.001.00-----------------------------------------------------1.00-----------
...............................................................................................................................................................................................................................................TGAGGCTGGACCTGGAGA.............1821.001.00--1.00--------------------------------------------------------------
............................................................................................................................................................................................................CGATTCTGCGGGCGAGATGCCCCTGGGA......................................2811.001.00---------------------1.00-------------------------------------------
...............................................................................................................................................................................................................................................TGAGGCTGGACCTGGAGAAAATTGCC.....2611.001.00-----1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................GCTGGACCTGGAGAAAATTGCCCT...2411.001.00---------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................ATCATGAGGCTGGACCTGGA...............2011.001.00----------------1.00------------------------------------------------
.............CCCGCTGGTTCCCGAAGGCAGATCC........................................................................................................................................................................................................................................2511.001.00-----------------------------------1.00-----------------------------
...........................................................................................................................................................................................................................................ATCATGAGGCTGGACCTGGAGAAAATTGCCCT...3211.001.00-------------------------------------1.00---------------------------
...............................................................................................................................GCCACGCTCCCCGCGCCTCGGCTTCG.....................................................................................................................2611.001.00-----1.00-----------------------------------------------------------
....................................................................................AGCGGCTCGGGTACCGTGGCAGCCCA................................................................................................................................................................261.000.00-------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................................GGCTGGACCTGGAGAAAATTGC......2211.001.00---------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................................CATGAGGCTGGACCTGGAGAAAATTGC......2711.001.00--1.00--------------------------------------------------------------
......CACCACTCCCGCTGGTTCCCGAAGG...............................................................................................................................................................................................................................................2511.001.00--1.00--------------------------------------------------------------
..........................................................................................................................................................................CCCTCTCTGGTTGCACGCTGGGG.............................................................................2311.001.00------------------------------------------------------1.00----------
...............................................................................................................................................................TGTAGATCGTTCCCTCTCTGGTTGCACGC..................................................................................2911.001.00--1.00--------------------------------------------------------------
................................................................................................................GTTTCTGAACCCCGGGC.............................................................................................................................................1711.001.00-------------------1.00---------------------------------------------
.........................................................................................................GCCGCAGGTTTCTGAACCCCGGGC.............................................................................................................................................2411.001.00---------------------------------------------1.00-------------------
...........................................................................................................................................................................................................TCGATTCTGCGGGCGAG..................................................1711.001.00-------------------------------------------------------1.00---------
......................................................................................................................................................................................................GGACCTCGATTCTGCGGGCGAGATG...............................................2511.001.00---------1.00-------------------------------------------------------
..................................................................................................................................ACGCTCCCCGCGCCTCG...........................................................................................................................1711.001.00----1.00------------------------------------------------------------
...........................................................................................................................................................CTCGTGTAGATCGTTCCCTC...............................................................................................2011.001.00----------------------------------------------1.00------------------
.........................................................................................CTCGGGTACCGTGGCAGCCGCAG..............................................................................................................................................................2311.001.00--1.00--------------------------------------------------------------
..........................................TCCCGAGAGTTGCGAGAAACT...............................................................................................................................................................................................................2111.001.00----1.00------------------------------------------------------------
....................................................................................................................................................................................................................................................CTGGACCTGGAGAAAATTGCCCTGG.2511.001.00---------------------------------------------------1.00-------------
...........................................................................................................................................................................................................................................ATCATGAGGCTGGACCTGGAGAAAATTGC......2911.001.00--------------------1.00--------------------------------------------
..........................................................................................................................................................................................................................AGATGCCCCTGGGACACATCATGAGG..........................2611.001.00--------------------------1.00--------------------------------------
.......................................................................................................................AACCCCGGGCCACGCTCCCCGCGC...............................................................................................................................2411.001.00-----------1.00-----------------------------------------------------
.............................................................................................................................................................................................GGGGATCCCGGACCTCGA...............................................................1811.001.00------------------------1.00----------------------------------------
................................................................................................................................................................GTAGATCGTTCCCTCTCTGGT.........................................................................................2111.001.00-----------------------------------------1.00-----------------------
....................................................................................................................................GCTCCCCGCGCCTCGCGT........................................................................................................................181.000.00-----------------------------1.00-----------------------------------
...................................................................................................................................................................................................................................................GCTGGACCTGGAGAAAATTGC......2111.001.00----------1.00------------------------------------------------------
..............................................................................................................................................................................................................................................ATGAGGCTGGACCTGGAGAAA...........2111.001.00--1.00--------------------------------------------------------------
.............................................................................................................................................................................TCTCTGGTTGCACGCTGGGGATCCCGTACC...................................................................301.000.00--1.00--------------------------------------------------------------
.................................................................................................................................................................TAGATCGTTCCCTCTCTGGTTGCACGC..................................................................................2711.001.00------------1.00----------------------------------------------------
...................................................................................................................................................................................................................................................GCTGGACCTGGAGAAAATTGCC.....2211.001.00----------1.00------------------------------------------------------
........................................................................................................................................CCCGCGCCTCGGCTTCGCGCTCGTGT............................................................................................................2611.001.00-------------------------1.00---------------------------------------
.............................GGCAGATCCCTTCTCCCG...............................................................................................................................................................................................................................1811.001.00-----1.00-----------------------------------------------------------
.................................................................................................................................................................................................................................................AGGCTGGACCTGGAGAAAAT.........2011.001.00--------------1.00--------------------------------------------------
...................................................................................................................................................................................................................................TGGGACACATCATGAGGC.........................1830.330.33----------------------------------------------------------0.33------
.......................................................................................................................................................................................................................................ACACATCATGAGGCTG.......................1630.330.33-----------------------------------------------------------0.33-----
..................................................................................................................................................................................................................................................GGCTGGACCTGGAGAA............1640.250.25-------------------0.25---------------------------------------------
...................................................................................................GTGGCAGCCGCAGGT............................................................................................................................................................1540.250.25------------------------------------------------------------0.25----
.........................................................................................................................................................................................................................GAGATGCCCCTGGGAC.....................................1670.140.14---0.14-------------------------------------------------------------

Antisense strand
GCTCCGCACCACTCCCGCTGGTTCCCGAAGGCAGATCCCTTCTCCCGAGAGTTGCGAGAAACTTTCCCTTGTCCCCGACGCTGCAGCGGCTCGGGTACCGTGGCAGCCGCAGGTTTCTGAACCCCGGGCCACGCTCCCCGCGCCTCGGCTTCGCGCTCGTGTAGATCGTTCCCTCTCTGGTTGCACGCTGGGGATCCCGGACCTCGATTCTGCGGGCGAGATGCCCCTGGGACACATCATGAGGCTGGACCTGGAGAAAATTGCCCTGGA
.........................................................................................................................................................(((((((...(((((.(((.((((..((.....))..))))....)))...)))))..)))))))....................................................
..................................................................................................................................................147......................................................................220................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
.........................................................................CCCGACGCTGCAGCGCC.................................................................................................................................................................................... 172.000.00----------------------------1.00---------1.00--------------------------
.....................................................................................................................................................................................GGATCCCCAGCGTGCA......................................................................... 1611.001.00-----------------------1.00-----------------------------------------
...........................................................................................................................CCGGGCCACGCTCCCCGT................................................................................................................................. 181.000.00--------------------------------------------------1.00--------------
.................................................................................................CCTGCGGCTGCCACGG............................................................................................................................................................. 1621.001.00-------------------------------------------------1.00---------------
.............................................................CTTTCCCTTGTCCCCGGT............................................................................................................................................................................................... 181.000.00-------------------------------1.00---------------------------------