ID: uc001wov.2_intron_1_0_chr14_24787985_r
GENE: (23)
chr14:24787935-24788353-


(7)
B-CELL 		(5)
BRAIN 		(7)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
UTERUS

Sense strand
GCTGGACGTCATCAACAAGCATTCATTCAACAACTTCCGCCTGCGAGTGGGTGAGAGACTTCCCCTGCTGCAGCAGTCTGGTACCTCCTCACCTTCCTGAGCTTGCCCCACTCCAAGTCCTTTGTTAGCTGCTCCCAGTTCATCCTGAAGCCCCTTTCCTGACTCACTCCCTGGGATGGGGTGTGAAGGTGCTGGGCAAGGAGGTACGAGGCTCTCCCACTCTTTTTCTTAAGCTACATTCCTCCAGCCCTTAGAGACCCCTCCTCTCCTCTAGGGCCCCCCAGGCTCTTCTCCCTTCCTTCCAGTTCCTTGTGGCTTCCTCTTCCCCTCTTCCTTCTCCAAGTCTGTCATTACCACATCCCTCATTAGGGTTGAACCATGGACCCGTAGTAGCTGGAGTTATTGGGGCCCAGAAGCCG
................................................................((((....))))...(((((((.((((......))))...((((((..(((........(((((..(((..(((......))).))).......)))))........)))..))))))....)))))))..................................................................................................................................................................................................................................
...............................................................64................................................................................................................................194...............................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532873(GSM532873)
G699N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...........................................................................................................................................................................TGGGATGGGGTGTGATAGG.....................................................................................................................................................................................................................................1944.000.005.002.00-2.003.00-2.00-1.002.002.00---2.00--2.00--1.00-2.001.002.001.001.001.002.001.001.001.001.001.00--------1.00------1.00--1.00----1.00--1.00---------
...........................................................................................................................................................................TGGGATGGGGTGTGATAA......................................................................................................................................................................................................................................183.000.00-------------------------1.00--------------1.00------------1.00----------------
...........................................................................................................................................................................TGGGATGGGGTGTGATAAA.....................................................................................................................................................................................................................................192.000.00-----------------------1.00-------------------1.00--------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGATATC.....................................................................................................................................................................................................................................192.000.00----------------2.00-----------------------------------------------------
.................................................................................................................................................................................................GGGCAAGGAGGTACGAGGC...............................................................................................................................................................................................................1911.001.00-------------------------------------------------------------1.00--------
...........................................................................................................................................................................TGGGATGGGGTGTGAACA......................................................................................................................................................................................................................................181.000.00------------------------------------1.00---------------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGAAGGGGG...................................................................................................................................................................................................................................211.000.00-------------1.00--------------------------------------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGATCTG.....................................................................................................................................................................................................................................191.000.00---------------------------------------1.00------------------------------
....................................................................TGCAGCAGTCTGGTACGTG............................................................................................................................................................................................................................................................................................................................................191.000.00-------1.00--------------------------------------------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGATAGC.....................................................................................................................................................................................................................................191.000.00----1.00-----------------------------------------------------------------
.............................................................................................................................................................................GGATGGGGTGTGAAGGTGGC..................................................................................................................................................................................................................................201.000.00-----------------------------------1.00----------------------------------
..........................................................................................................................................................................CTGGGATGGGGTGTGAGCTT.....................................................................................................................................................................................................................................201.000.00---------------------------1.00------------------------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGAGAGG.....................................................................................................................................................................................................................................191.000.00--------------------------------------1.00-------------------------------
...........................................................................................................................................................................TGGGATGGGGTGTGATAGA.....................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00----------
................................................................................................................................................................................................................AGGCTCTCCCACTCTAAA.................................................................................................................................................................................................181.000.00------------------------------------------------1.00---------------------
............................................................................................................................................................................................................................................................................................GCTCTTCTCCCTTCCTGCT....................................................................................................................191.000.00-----------------------------------------------1.00----------------------
................................................................................................................................................................................................TGGGCAAGGAGGTACTGTT................................................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------------------
........................................................................................................................................................................................GAAGGTGCTGGGCAAGGACG.......................................................................................................................................................................................................................201.000.00-------------------------------------1.00--------------------------------
........................................................................................................................................................................................GAAGGTGCTGGGCAAGGGCC.......................................................................................................................................................................................................................201.000.00---------1.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................TTGAACCATGGACCC.................................1540.250.25----------0.25-----------------------------------------------------------

Antisense strand
GCTGGACGTCATCAACAAGCATTCATTCAACAACTTCCGCCTGCGAGTGGGTGAGAGACTTCCCCTGCTGCAGCAGTCTGGTACCTCCTCACCTTCCTGAGCTTGCCCCACTCCAAGTCCTTTGTTAGCTGCTCCCAGTTCATCCTGAAGCCCCTTTCCTGACTCACTCCCTGGGATGGGGTGTGAAGGTGCTGGGCAAGGAGGTACGAGGCTCTCCCACTCTTTTTCTTAAGCTACATTCCTCCAGCCCTTAGAGACCCCTCCTCTCCTCTAGGGCCCCCCAGGCTCTTCTCCCTTCCTTCCAGTTCCTTGTGGCTTCCTCTTCCCCTCTTCCTTCTCCAAGTCTGTCATTACCACATCCCTCATTAGGGTTGAACCATGGACCCGTAGTAGCTGGAGTTATTGGGGCCCAGAAGCCG
................................................................((((....))))...(((((((.((((......))))...((((((..(((........(((((..(((..(((......))).))).......)))))........)))..))))))....)))))))..................................................................................................................................................................................................................................
...............................................................64................................................................................................................................194...............................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532873(GSM532873)
G699N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...........................................................................................................................................................................................................................................ACATTCCTCCAGCCCGGCA..................................................................................................................................................................... 194.000.00-2.00-2.00------------------------------------------------------------------
...........................................................................................................AACAAAGGACTTGGAGTGG..................................................................................................................................................................................................................................................................................................... 1913.003.00-----------2.00---------------------------------1.00------------------------
...........................................................................................................................................................................................................................................ACATTCCTCCAGCCCTTGGC.................................................................................................................................................................... 202.000.00------------------1.00-----------------------------------1.00---------------
........................................................................................................................................................................................................................................................................................................................................................................................CCAGCTACTACGGGTCCATGG...................... 2112.002.00--------2.00-------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................TGGACCCGTAGTAGCTAA...................... 182.000.00---------------2.00------------------------------------------------------
...............................................................................................................................................................................................................................................AGAGGAGAGGAGGGGTCTCTAAGGGCTGGAGGA................................................................................................................................................... 3311.001.00-------------------1.00--------------------------------------------------
..................................................................GTACCAGACTGCTGCAGC............................................................................................................................................................................................................................................................................................................................................... 1811.001.00--------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................................................................................................................................TTCCTTCTCCAAGTCTGTAA..................................................................... 201.000.00----------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................................................................................................................GCCACAAGGAACTGGAAGG....................................................................................................... 1911.001.00-------------------------------------------------------1.00--------------
..............................................................................................................................CAGGATGAACTGGGAGCAGCT................................................................................................................................................................................................................................................................................ 2111.001.00-----1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................GCCACAAGGAACTGGAAGGAAG....................................................................................................... 2211.001.00--1.00-------------------------------------------------------------------
......................................................................................................................................................AGGGAGTGAGTCAGGAAAGGGG....................................................................................................................................................................................................................................................... 2211.001.00--------------------1.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TTCCCCTCTTCCTTCTTTT.............................................................................. 191.000.00---------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................................CTAAGGGCTGGAGGAATGT..................................................................................................................................................................... 1911.001.00--------------------------1.00-------------------------------------------
...................................................................................................................................CTTCAGGATGAACTGGGAG............................................................................................................................................................................................................................................................................. 1911.001.00--1.00-------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................TTCCTCTTCCCCTCTTTGG.................................................................................... 191.000.00-------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................CTTAAGCTACATTCCCGGG............................................................................................................................................................................. 191.000.00----------------------------------1.00-----------------------------------
........................................................................................................................................................................................................................................GCTACATTCCTCCAGCCAC........................................................................................................................................................................ 191.000.00-------1.00--------------------------------------------------------------
.............................CTCGCAGGCGGAAGTTGT.................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00------1.00---------------------------------------------------------------
.........................................................................................................................................................................................CTCCTTGCCCAGCACCTT........................................................................................................................................................................................................................ 1811.001.00----------------------------------------------------------1.00-----------
...............................................................................................................................CTTCAGGATGAACTGGGAGCAGC............................................................................................................................................................................................................................................................................. 2311.001.00--1.00-------------------------------------------------------------------
.....................................................................................................................CTTCAGGATGAACTGGGAGCAGCTAACAAAGGA............................................................................................................................................................................................................................................................................. 3311.001.00-----1.00----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CTTCCTCTTCCCCTCTGCGA.................................................................................... 201.000.00--------------------------------------------------------1.00-------------
............................................................................................................................CTTCAGGATGAACTGGGAGCAGCTAA............................................................................................................................................................................................................................................................................. 2611.001.00------------1.00---------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CCCCTCTTCCTTCTCCAAC............................................................................ 191.000.00------------1.00---------------------------------------------------------
...................................................................................CCTCCTCACCTTCCTGAGCTTGCCCCACTC.................................................................................................................................................................................................................................................................................................................. 301.000.00-------------------1.00--------------------------------------------------
.....................................................................................................................................................................................................................................TAAGGGCTGGAGGAATGTAGCTTA...................................................................................................................................................................... 2411.001.00---------------------1.00------------------------------------------------
.................................................................................................................................CAGGATGAACTGGGAGCA................................................................................................................................................................................................................................................................................ 1811.001.00-----1.00----------------------------------------------------------------
..................................................................................................GAGCTTGCCCCACTCCATGGG............................................................................................................................................................................................................................................................................................................ 211.000.00--------------------------------------------1.00-------------------------
.CTTGTTGATGACGTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................ 1811.001.00--1.00-------------------------------------------------------------------
...........................................................................................................................................................................................................................................ACATTCCTCCAGCCCTTGGCA................................................................................................................................................................... 211.000.00------------------1.00---------------------------------------------------
........................................................................................................................................................................................................................................TCTCTAAGGGCTGGAGGAATGTAGC.................................................................................................................................................................. 2511.001.00---------------------------------------------------1.00------------------
.......................................................................................................................................................................................................................................AGCTACATTCCTCCAGCCCT........................................................................................................................................................................ 201.000.00-----------------------------------------1.00----------------------------
..............................................................................................................................................AGGAAAGGGGCTTCAGGA................................................................................................................................................................................................................................................................... 1820.500.50-----0.50----------------------------------------------------------------
...................................................................................................................................................................................................................................................CCAGCCCTTAGAGACGT............................................................................................................................................................... 170.400.00-----------------------------------------------------------------0.20-0.20--
...................................................................................................................................................................................................................................................CCAGCCCTTAGAGACGTCG............................................................................................................................................................. 190.400.00----------------------------------------------------------------0.20---0.20-
...............................................................................................................CTAACAAAGGACTTGGA................................................................................................................................................................................................................................................................................................... 1730.330.33--------------------------------------------------------------0.33-------
...................................................................................................................................................................................................................................................CCAGCCCTTAGAGACGTC.............................................................................................................................................................. 180.200.00------------------------------------------------------------------0.20---
...................................................................................................................................................................................................................................................GTCTCTAAGGGCTGG................................................................................................................................................................. 1550.200.20---------------------------------------------------------------0.20------
...............................................................................................................................TGAACTGGGAGCAGC..................................................................................................................................................................................................................................................................................... 1570.140.14---------------------------------------------------------------------0.14