ID: uc001wmr.2_intron_3_0_chr14_24642251_f
GENE: (4)
chr14:24642201-24642384+


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(3)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(16)
SKIN 		(1)
XRN.ip

Sense strand
TCAGATCGGTGTGATCCGCGTCTATTCTCAACAATGCCAGTACCTCGTGGGTAAGGCTGGGAACCCTCAAAGGTGGGGCGGGCTGAGCAGCTGTCTGCTAAGCTGGCTGTCTACCTCGTCCTCCCTGCCCACAGAGGACATCCAGCACATCTTGGAGCGCCTCCACCGTGCCCAGCTGCAGATC
......................................................(((.((....))....(((((((((.((((.(((((....))))).)))).)))..)))))).)))................................................................
..................................................51.......................................................................124..........................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...................................................TAAGGCTGGGAACCCTCAAAGGTGGGGC.........................................................................................................28150.0050.0047.00-----2.00-----------------------1.00----------------
.................................ATGCCAGTACCTCGTGG......................................................................................................................................17139.0039.00--9.008.00---1.00-2.002.00-2.001.00---1.001.00--1.001.001.001.00---1.001.00-1.00---1.001.00--1.00--1.00--1.00-
...................................................TAAGGCTGGGAACCCTCAAAGGTGG............................................................................................................25125.0025.0022.00----2.00-----------------------------------1.00-----
..................................................GTAAGGCTGGGAACCCTCAAAG................................................................................................................22110.0010.00-10.00---------------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAGGTGGGGC.........................................................................................................29110.0010.0010.00----------------------------------------------
................................AATGCCAGTACCTCGTGG......................................................................................................................................1819.009.00--2.002.00---1.00-----1.002.00----------------------------1.00---
...................................................TAAGGCTGGGAACCCTCAAAG................................................................................................................2118.008.00-6.00--1.00-----------1.00------------------------------
..................................TGCCAGTACCTCGTGG......................................................................................................................................1618.008.00--2.002.00---1.00------------------1.00------1.00---1.00---------
...................................................TAAGGCTGGGAACCCTCAAAGGT..............................................................................................................2316.006.002.00-----2.00-------------------------------1.00-----1.00--
...................................................TAAGGCTGGGAACCCTCAAAGGTGGGGCGGGCTG...................................................................................................3415.005.00-1.00--4.00------------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAGGTGGGGCG........................................................................................................3014.004.00-4.00---------------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAGGTGG............................................................................................................2613.003.003.00----------------------------------------------
...................................................TAAGGCTGGGAACCCTCAAAGGTGGGGCGGG......................................................................................................3113.003.002.00--------------1.00-------------------------------
...................................................TAAGGCTGGGAACCCTCAAAGGTGGG...........................................................................................................2613.003.001.00------------------1.00-----1.00---------------------
........................................................................GTGGGGCGGGCTGAGCAGCTTT..........................................................................................222.000.00-----2.00-----------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAA................................................................................................................222.000.00-2.00---------------------------------------------
....................TCTATTCTCAACAATGCCAGTACCTC..........................................................................................................................................2612.002.00-2.00---------------------------------------------
................................................................................................GCTAAGCTGGCTGTCTACCTCGTCC...............................................................2511.001.001.00----------------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAGGTGGGG..........................................................................................................2811.001.001.00----------------------------------------------
...................................................TAAGGCTGGGAACCCTCAAAGGTGGGGCG........................................................................................................2911.001.00-1.00---------------------------------------------
.....................................................................AAGGTGGGGCGGGCTGAGCAGC.............................................................................................2211.001.00----------------------------------1.00------------
..................................................GTAAGGCTGGGAACCCTCAA..................................................................................................................2011.001.00-1.00---------------------------------------------
...................................................TAAGGCTGGGAACCCTCAAAGGTGGCGCA........................................................................................................2911.0025.00-1.00---------------------------------------------
.................................ATGCCAGTACCTCGTG.......................................................................................................................................1611.001.00---1.00-------------------------------------------
....................TCTATTCTCAACAATGCCAGTACCTCG.........................................................................................................................................2711.001.00-1.00---------------------------------------------
...................................................TAAGGCTGGGAACCCTCAAAGG...............................................................................................................2211.001.001.00----------------------------------------------
.....................................................................AAGGTGGGGCGGGCTGAA.................................................................................................181.000.001.00----------------------------------------------
..................................................GTAAGGCTGGGAACCCTCGAAG................................................................................................................221.000.00-1.00---------------------------------------------
.............................................................................................................................................CCAGCACATCTTGGAGCGGTTA.....................221.000.00---------------------------1.00-------------------
..................................................GTAAGGCTGGGAACCCTCAAAGGT..............................................................................................................2411.001.00--------------------1.00--------------------------
...................................................TAAGGCTGGGAACCCTCAAAGGTGGGGCGG.......................................................................................................3011.001.001.00----------------------------------------------
..................................................GTAAGGCTGGGAACCCTCAAAT................................................................................................................221.000.00-1.00---------------------------------------------
...................................................TAAGGCTGGGAACCCTCAGAG................................................................................................................211.000.00-1.00---------------------------------------------
...................................GCCAGTACCTCGTGG......................................................................................................................................1511.001.00--1.00--------------------------------------------
..................................................GTAAGGCTGGGAACCCTCA...................................................................................................................1920.500.50---------------0.50-------------------------------

Antisense strand
TCAGATCGGTGTGATCCGCGTCTATTCTCAACAATGCCAGTACCTCGTGGGTAAGGCTGGGAACCCTCAAAGGTGGGGCGGGCTGAGCAGCTGTCTGCTAAGCTGGCTGTCTACCTCGTCCTCCCTGCCCACAGAGGACATCCAGCACATCTTGGAGCGCCTCCACCGTGCCCAGCTGCAGATC
......................................................(((.((....))....(((((((((.((((.(((((....))))).)))).)))..)))))).)))................................................................
..................................................51.......................................................................124..........................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................................GCGCCTCCACCGTGCCCAGCTGCAGACCC 292.000.00-----------2.00-----------------------------------
................................................................................................................................................................CTCCACCGTGCCCAGCTTGCG... 211.000.00--------1.00--------------------------------------
............................................................................................................................................................GCGCCTCCACCGTGCCCAGCTCCC.... 241.000.00--------1.00--------------------------------------
..........GGCATTGTTGAGAATAGACGCGGATCAC.................................................................................................................................................. 2811.001.00--------------------------------1.00--------------
................TTGTTGAGAATAGACGCG...................................................................................................................................................... 1811.001.00----------------------------------------1.00------
............................................................................................................................................................GCGCCTCCACCGTGCCCAGCTGCAGATCCC 301.000.00--------1.00--------------------------------------
..........................................................................................................AGGACGAGGTAGACAG.............................................................. 1630.330.33----------------------------------------------0.33
...........................................................................................................AGGACGAGGTAGACA.............................................................. 1570.140.14----------------------------------------------0.14