ID: uc001wav.1_intron_10_0_chr14_21875192_r.3p
GENE: CHD8(3)
chr14:21875142-21875391-


(10)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(13)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
LIVER 		(4)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTGAATATGTTGAGGAAGCAATGTATCTTACATTCAGTGATATGGCACTATTTTTCAGGAAGATAAACAGCGGTGGAGGTGGGTGGTGGTGCAGTTTGTATTGCCTATTAAACATGCCTTAATATAGGCAAGTAATTCAGAAAAGCTCCTCATTTAGGTACATTTTTGGTTTTTTCTGACTTTACTGCCTTCATGCTTAGGGACGCCTCATCCCAGGCGCATACAAGTTTGACGCTCTGATCACCACTTT
...........................................................................((((.((..((..((((.....))))..))......((.(((((......))))).))............))))))...................................................................................................
........................................................................73.............................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189784SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR343334SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................GGTGGGTGGTGGTGCATGGC.........................................................................................................................................................2015.000.00-3.00---1.002.001.00-1.00--1.00--2.001.00-1.00-------------1.00----------1.00--------
..............................................................................GTGGGTGGTGGTGCATGGT.........................................................................................................................................................1905.004.002.00---3.00-----------------------------------------------
..............................................................................GTGGGTGGTGGTGCA.............................................................................................................................................................1504.004.00--------1.00-------------1.00-----------1.00-1.00---------------
..............................................................................GTGGGTGGTGGTGCACGGC.........................................................................................................................................................1904.004.00--------------1.00-1.00----------------1.00---1.00--------------
...............................................................................TGGGTGGTGGTGCAGGGCC........................................................................................................................................................193.000.00-----1.00--------1.00--------------------------------1.00----
..............................................................................GTGGGTGGTGGTGCATC...........................................................................................................................................................1703.004.00---3.00------------------------------------------------
..............................................................................GTGGGTGGTGGTGCACGG..........................................................................................................................................................1802.004.00-------1.00----1.00---------------------------------------
..............................................................................GTGGGTGGTGGTGCATTGC.........................................................................................................................................................1902.004.00-------------------------1.00---------1.00----------------
.................................................................................................................................AAGTAATTCAGAAAAGGGT......................................................................................................192.000.00-----------------1.00-----------1.00----------------------
..............................................................................................................................................................................................................CTCATCCCAGGCGCATACAAGTTTGAC.................2711.001.00----------------------------------------------1.00-----
........................................TATGGCACTATTTTTCTG................................................................................................................................................................................................181.000.00--1.00-------------------------------------------------
...................................................................................................................................................................TTTTGGTTTTTTCTGTGTT....................................................................191.000.00----------1.00-----------------------------------------
.....................................................................................................................................................................................................................................TGACGCTCTGATCACCACT..1911.001.00--------------------------1.00-------------------------
......................................................................................................................TTAATATAGGCAAGTAATTCAGAA............................................................................................................2411.001.001.00---------------------------------------------------
...........................................................................................................................................................................................................................CATACAAGTTTGACGCTCTGATCACCA....2711.001.00-------------------------------1.00--------------------
..............................................................................................................................GGCAAGTAATTCAGACTCT.........................................................................................................191.000.00----------------------------1.00-----------------------
..............................................................................GTGGGTGGTGGTGCATGGG.........................................................................................................................................................1901.004.00---------1.00------------------------------------------
.............................................................................................................................................................................................................................TACAAGTTTGACGCTCTGATCACCA....2511.001.00--------------------1.00-------------------------------
...........................................................................................................................ATAGGCAAGTAATTCAGAAAA..........................................................................................................2111.001.00------------------------1.00---------------------------
.............................................................................GGTGGGTGGTGGTGC..............................................................................................................................................................1501.001.00--------1.00-------------------------------------------
........................................................................GTGGAGGTGGGTGGTGGTGA..............................................................................................................................................................201.000.00---------------------------------------------1.00------
..........................................................................................................................................................................................................................GCATACAAGTTTGACGCTCTGAT.........2311.001.00---------------------------------------1.00------------
.................................................................................................................................................................................................................................AGTTTGACGCTCTGATC........1711.001.00--------------------------------------------1.00-------
....................ATGTATCTTACATTCTTG....................................................................................................................................................................................................................181.000.00--1.00-------------------------------------------------
.........................................................................................................................................................................................................................CGCATACAAGTTTGACGCTCTGATC........2511.001.00----------------------------------------1.00-----------
..................................................................................................................................................................TTTTTGGTTTTTTCTGGC......................................................................181.000.00-----------1.00----------------------------------------
...................................................................................................................................................................TTTTGGTTTTTTCTGCC......................................................................171.000.00-----------1.00----------------------------------------
..............................................................................GTGGGTGGTGGTGCATCGC.........................................................................................................................................................1901.004.001.00---------------------------------------------------
.............................................................................GGTGGGTGGTGGTGCGGGC..........................................................................................................................................................1901.001.00---------------------1.00------------------------------
...................................................................................................................................................................................................................................TTTGACGCTCTGATCACCACTTTCGAG271.000.00----------1.00-----------------------------------------
..........................................................................................................................................................................TTTTTCTGACTTTACTGCCTTCATGC......................................................2611.001.00--------------------------------------1.00-------------
..............................................................................GTGGGTGGTGGTGCACCC..........................................................................................................................................................1801.004.00-----------------------1.00----------------------------
.................................................................................................................................................................................................................................AGTTTGACGCTCTGATCAC......1911.001.00------------------------------1.00---------------------
..............................................................................GTGGGTGGTGGTGCATAG..........................................................................................................................................................1801.004.00---------------------------1.00------------------------
..................................................................................GTGGTGGTGCAGTTTTTTT.....................................................................................................................................................191.000.00-------------1.00--------------------------------------
.....................................................................................................................................................................................................................CAGGCGCATACAAGTTTGACGCT..............2311.001.00-------------1.00--------------------------------------
.......................................................................GGTGGAGGTGGGTGGTGGAGTT.............................................................................................................................................................221.000.00-----------------------------------------1.00----------
..........................................................................................................................TATAGGCAAGTAATTCAG..............................................................................................................1811.001.00--1.00-------------------------------------------------
..............................................................................GTGGGTGGTGGTGCAGGGCC........................................................................................................................................................2090.560.11-----0.22-----------0.11-------------------------------0.110.11-
..............................................................................GTGGGTGGTGGTGCAGGTCC........................................................................................................................................................2090.110.11------------------0.11---------------------------------
..............................................................................GTGGGTGGTGGTGCAGGGC.........................................................................................................................................................1990.110.11---------------------------------------------------0.11
..............................................................................GTGGGTGGTGGTGCAG............................................................................................................................................................1690.110.11------------------------------------------------0.11---

Antisense strand
CTGAATATGTTGAGGAAGCAATGTATCTTACATTCAGTGATATGGCACTATTTTTCAGGAAGATAAACAGCGGTGGAGGTGGGTGGTGGTGCAGTTTGTATTGCCTATTAAACATGCCTTAATATAGGCAAGTAATTCAGAAAAGCTCCTCATTTAGGTACATTTTTGGTTTTTTCTGACTTTACTGCCTTCATGCTTAGGGACGCCTCATCCCAGGCGCATACAAGTTTGACGCTCTGATCACCACTTT
...........................................................................((((.((..((..((((.....))))..))......((.(((((......))))).))............))))))...................................................................................................
........................................................................73.............................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189784SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR343334SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........GTTGAGGAAGCAATGCAG................................................................................................................................................................................................................................ 181.000.00-------------------1.00--------------------------------
.......................................................................................................CCTATTAAACATGCCGACG................................................................................................................................ 191.000.00------------------------------------------1.00---------