ID: uc001vzr.2_intron_0_0_chr14_21559300_r
GENE: ZNF219(4)
chr14:21559250-21559619-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(12)
CELL-LINE 		(5)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
ATCTTTCCGCTCAGCACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGTGAGGGAGGCAGCCTCCGGCGTGGAGAGGGGACTGGGGGCGGGCAGAAAGGTGAGGGCTACCGAAACACTAGGAGGTGAAGTTTGTTCCGAAGCCTTCAGTTTGGCTGGATGAGATCACTTGGGAAACGCTCCTTTATTAAATCAAAGTGGGTGGGAGACGCAGTGCCCTTTCTTGGTTCTGAGAATGAGGTCTGTAAATTGGGCGAAATTCGGGTGGGTGCGTGCAGTCATCGTGACCCCGTGACCCTATCGCACCCACTCTCCCCAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGGGCACCCAGTCC
.......................................................................................................................................................................................................................................................................(((((((((((....((((.((......)))))).....))))))))))).........................................................
...............................................................................................................................................................................................................................................................256.............................................................320................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532871(GSM532871)
G652N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCC......................................................21122.0022.0017.00-3.00---------------1.00------------------1.00-------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTCT........................................................................................228.000.001.005.00-------------1.00-------------------------1.00---------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTCA........................................................................................2217.007.00-6.00----------------------------------------1.00--------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCCC.....................................................2213.003.001.002.00-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTTT......................................................2113.001.002.00-------------1.00------------------------------------
.....................................................................................................................................................................................................................................................................TCGGGTGGGTGCGTGCAGTCA........................................................................................2112.002.00-------1.00-----------------------------------1.00-------
.................................TCTGCGAGTGCACACAGGCG.............................................................................................................................................................................................................................................................................................................................202.000.00------------1.00--------1.00-----------------------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTAGA.......................................................................................232.000.00-2.00-------------------------------------------------
.............................................................................................................................................................................................................................................................................................................TCGCACCCACTCTCCCCAGGCGAGCGGCCCC......................................312.000.00---2.00-----------------------------------------------
.......................................................................GTGGAGAGGGGACTGGGG.........................................................................................................................................................................................................................................................................................1822.002.00------2.00--------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTTTCC......................................................212.000.002.00--------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACTACGCGGGCACCCAGT..1812.002.00----2.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTGTCC......................................................211.000.001.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCT........................................................1911.001.00-----------------------------------1.00---------------
..........................AAGTGCATCTGCGAGGGCA.....................................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00----------------------------
.........................................................................GGAGAGGGGACTGGGCG........................................................................................................................................................................................................................................................................................171.000.00------------------------------1.00--------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTC.......................................................2011.001.001.00--------------------------------------------------
........................................................................................................................................................................................................................................................................................................CCCTATCGCACCCACTCT........................................................1811.001.00----------------------------------1.00----------------
.............................................................................................................................................................................................................................................TGAGGTCTGTAAATTTCTG..................................................................................................................191.000.00-------------------1.00-------------------------------
.......................................................................................GGGCGGGCAGAAAGGGAA.........................................................................................................................................................................................................................................................................181.000.00-----------1.00---------------------------------------
.......................................................................................................................................................................................................................................TGAGAATGAGGTCTGTAAATTG.....................................................................................................................2211.001.00--------------------------------------1.00------------
....................ACCTCAAAGTGCATCTG.............................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------1.00------------------------
........................................................................................................................................................................................................GGGTGGGAGACGCAGTGGAAA.....................................................................................................................................................211.000.00---------1.00-----------------------------------------
.....................................................................GCGTGGAGAGGGGACGCAA..........................................................................................................................................................................................................................................................................................191.000.00-----------------------------1.00---------------------
............................................................................................................................................................................................................................................ATGAGGTCTGTAAATTGGGCG.................................................................................................................2111.001.00--------1.00------------------------------------------
....................................................................................................................................................................................................................................................................TTCGGGTGGGTGCGTGCAGTAA........................................................................................221.000.00-1.00-------------------------------------------------
......................................................................................................................................................................................................................................................................................................GACCCTATCGCACCCACTCTCC......................................................2211.001.001.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................................ACCCTATCGCACCCACTCTCT......................................................2111.001.00-----------------1.00---------------------------------
....................................................................................TGGGGGCGGGCAGAAAAA............................................................................................................................................................................................................................................................................181.000.00----------------1.00----------------------------------
.........................................................................GGAGAGGGGACTGGGCGG.......................................................................................................................................................................................................................................................................................181.000.00----------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................GACCCTATCGCACCCACTCTC.......................................................2111.001.00-----------------------1.00---------------------------
.......CGCTCAGCACATCACCTCAAA......................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------1.00----------
................................ATCTGCGAGTGCACACAG................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------1.00-----------------
...........................................................................................................................................................GCTGGATGAGATCACTTGGGAAACGC.............................................................................................................................................................................................2611.001.00--------------------1.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GACTACGCGGGCACCCAG...1811.001.00--------------------------------1.00------------------
..........................................................................................CGGGCAGAAAGGTGAGGGC.....................................................................................................................................................................................................................................................................1920.500.50-----------------------------------------------0.50---
........................................................................TGGAGAGGGGACTGGGG.........................................................................................................................................................................................................................................................................................1740.500.50-------------------------------------------------0.250.25
......................CTCAAAGTGCATCTGC............................................................................................................................................................................................................................................................................................................................................1630.330.33------------------------------------------------0.33--
........................................................................TGGAGAGGGGACTGGG..........................................................................................................................................................................................................................................................................................1680.120.12---------0.12-----------------------------------------

Antisense strand
ATCTTTCCGCTCAGCACATCACCTCAAAGTGCATCTGCGAGTGCACACAGGTGAGGGAGGCAGCCTCCGGCGTGGAGAGGGGACTGGGGGCGGGCAGAAAGGTGAGGGCTACCGAAACACTAGGAGGTGAAGTTTGTTCCGAAGCCTTCAGTTTGGCTGGATGAGATCACTTGGGAAACGCTCCTTTATTAAATCAAAGTGGGTGGGAGACGCAGTGCCCTTTCTTGGTTCTGAGAATGAGGTCTGTAAATTGGGCGAAATTCGGGTGGGTGCGTGCAGTCATCGTGACCCCGTGACCCTATCGCACCCACTCTCCCCAGGCGAGCGGCCCTACAAGTGTCCGCACTGCGACTACGCGGGCACCCAGTCC
.......................................................................................................................................................................................................................................................................(((((((((((....((((.((......)))))).....))))))))))).........................................................
...............................................................................................................................................................................................................................................................256.............................................................320................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532871(GSM532871)
G652N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.........................................................................................................................................................................................................................CTCAGAACCAAGAAAGGG....................................................................................................................................... 1811.001.00------------------------------------1.00--------------
...............................................................................TCTGCCCGCCCCCAGTCCC................................................................................................................................................................................................................................................................................ 1911.001.00---------------------------------------------1.00-----
.................................................................................................................................................................................................................CATTCTCAGAACCAAGAAAGGGCACTGCGT................................................................................................................................... 3011.001.00--------1.00------------------------------------------
.....GTGATGTGCTGAGCGGA............................................................................................................................................................................................................................................................................................................................................................ 1711.001.00---------------------------1.00-----------------------
......................................................................................................................................TCCAGCCAAACTGAAGGCTTCGGAACA................................................................................................................................................................................................................. 2711.001.00--------------------------------------------1.00------
...............................................................................................................................................GCCTTCAGTTTGGCTGGATGAGAAA.......................................................................................................................................................................................................... 251.000.00------------------------1.00--------------------------
...................................................................................................................................GCCAAACTGAAGGCTTCGGAACAAAC..................................................................................................................................................................................................................... 2611.001.00---------------------------------------1.00-----------
..............................................................................................................................................................................................................................................................................................................CGCACCCACTCTCCCGGC.................................................. 181.000.00----------------------------------------------1.00----
...........................................................CCCCTCTCCACGCCGGAGGCTGC................................................................................................................................................................................................................................................................................................ 2311.001.00-------------1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CTGCGACTACGCGGGAA........ 171.000.00-------------------------1.00-------------------------
...........CAGCACATCACCTCATCA..................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------------1.00----------------------
...............................................................................................................................................................................AAACGCTCCTTTATTAA.................................................................................................................................................................................. 171.000.00-----1.00---------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GCGACTACGCGGGCACCC..... 181.000.00-----1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................GACACTTGTAGGGCCGCTCGCCT............................. 2311.001.00-------1.00-------------------------------------------
..........CTTTGAGGTGATGTGCTGA..................................................................................................................................................................................................................................................................................................................................................... 1920.500.50-------------------------------0.50-------------------
.....................................................................CAGTCCCCTCTCCACGC............................................................................................................................................................................................................................................................................................ 1720.500.50-------------------------------0.50-------------------
................................................................................................................................................................................................................................................................................................................................TTGTAGGGCCGCTCGC.................................. 1670.140.14---0.14-----------------------------------------------