ID: uc001vzo.1_intron_5_0_chr14_21546367_f.3p
GENE: ARHGEF40(6)
chr14:21546857-21547106+


(1)
AGO1.ip 		(1)
AGO3.ip 		(4)
BRAIN 		(6)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(3)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AACTGTCTTGGCCAACATCGGTCAGTAAAGAGTCAGGATTCAAACCAAAGCAGTCAGGGTTCAGCCCATGCTTTTGATCCATGCTGCTATGCAACCTCTCATGTTTGCATCCCTCAGAGGCACGGAAGGACAGAATTGAGGGGCTCAACAAGGGAAATGATTCATTCTTCTCTGCTCCTTCCCAAGGCTGGAGGGCCAAGGCCCAGCTACACTGTATCAGGAAGTGGACGAGGCCATTCACCAGCTTGTG
.................................................................((.(((((((((...((((...((((........))))...))))...))))))))).)).............................................................................................................................
................................................................65...............................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189786SRR189787SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR029128(GSM416757)
H520. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
........................................................................................................................CACGGAAGGACAGAATTGAGGG............................................................................................................2215.005.00------1.00---1.00------------------1.00------1.00---------------------1.00-----
.........................................................................................................................ACGGAAGGACAGAATTGAGGGGCT.........................................................................................................2414.004.00------------1.001.00--------------------1.00-------------1.00---------------
........................................................................................................................CACGGAAGGACAGAATTGAGG.............................................................................................................2113.003.00-------1.00------------------------------1.00--------------------1.00----
.........................................................................................................................ACGGAAGGACAGAATTGAGGG............................................................................................................2113.003.00-------------------1.00-------------1.00-----------------------1.00------
........................................................................................................................CACGGAAGGACAGAATTGAGGGGCT.........................................................................................................2513.003.00---------------------------------------------1.00--------1.00--------1.00
.........................................................................................................................ACGGAAGGACAGAATTGAGGGG...........................................................................................................2213.003.00-----------------------------------------1.00---------1.00----------1.00-
.........................................................................................................................ACGGAAGGACAGAATTGAGGGGC..........................................................................................................2313.003.00------1.00------------1.00---------------1.00----------------------------
........................................................................................................................CACGGAAGGACAGAATTGAGGGGC..........................................................................................................2412.002.00-----------------1.00---1.00------------------------------------------
........................................................................................................................CACGGAAGGACAGAATTGAGGGA...........................................................................................................2312.005.00---------1.00---1.00--------------------------------------------------
.......................................................................................................................................................................................................................ATCAGGAAGTGGACGAGGCCAT.............2212.002.00---1.00----1.00-------------------------------------------------------
..........................................................................................................................CGGAAGGACAGAATTGAGGGGCT.........................................................................................................2312.002.00---------------------1.00----------------------------1.00-------------
..........................................................................................................................................................................................................................AGGAAGTGGACGAGGCCAT.............1912.002.001.00------------------------------------------1.00--------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGG.............................................................................................................2012.002.00----------1.00-----------1.00-----------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGGGGCTAT.......................................................................................................2612.004.00------------------1.00----------------------------1.00----------------
........................................................................................................................................................................................................................TCAGGAAGTGGACGAGGCCAT.............2112.002.002.00---------------------------------------------------------------
........................................................................................................................CACGGAAGGACAGAATTGAGGGG...........................................................................................................2312.002.00-----------------1.00--------------------------------------1.00-------
........................................................................................................................CACGGAAGGACAGAATTGAGGA............................................................................................................2212.003.00---------1.00-----1.00------------------------------------------------
.....................................................................................................................................................................................................................GTATCAGGAAGTGGACGAGG.................2012.002.00-----------1.00----------------------------1.00-----------------------
........................................................................................................................CACGGAAGGACAGAATTGAGGGAAA.........................................................................................................2511.005.00--------------1.00-------------------------------------------------
......................................................................................................................................................................................................................TATCAGGAAGTGGACGAG..................1811.001.00----1.00-----------------------------------------------------------
..................................................................................................................................................................................................................ACTGTATCAGGAAGTGGACGAGGCC...............2511.001.00----1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................AGGAAGTGGACGAGGCCA..............1811.001.00-------------------------------1.00--------------------------------
........................................................................................................................................................................................................................TCAGGAAGTGGACGAGGCCA..............2011.001.001.00---------------------------------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAG..............................................................................................................1911.001.00------------------------------------------1.00---------------------
........................................................................................................................................................................................................................TCAGGAAGTGGACGAGGCCATA............2211.002.00-----1.00----------------------------------------------------------
.............................................................................................................................AAGGACAGAATTGAGGGGCTCAACAAGGGAA..............................................................................................3111.001.00-----------------------1.00----------------------------------------
.........................................................................................................................................................................................................................CAGGAAGTGGACGAGGCC...............1811.001.00-------1.00--------------------------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGGGA...........................................................................................................2211.003.00-------------------------------------------------------1.00--------
..........................................................................................................................CGGAAGGACAGAATTGAGGGGCTA........................................................................................................2411.002.00----------------------------------------------------1.00-----------
..........................................................................................................................CGGAAGGACAGAATTGAGGGGAT.........................................................................................................231.000.00-------------------------------------------------1.00--------------
.....................................................................GCTTTTGATCCATGCTGTTGG................................................................................................................................................................211.000.00-----------------------------------------------------1.00----------
.......................................................................................................................................................................................................................ATCAGGAAGTGGACGAGGCCA..............2111.001.00--------1.00-------------------------------------------------------
........................................................................................................................................................................................................................TCAGGAAGTGGACGAGGCCATTCAAC........261.000.00-----1.00----------------------------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGGGGT..........................................................................................................2311.003.00----1.00-----------------------------------------------------------
....................................................................................................................................................................................................................TGTATCAGGAAGTGGACGAG..................2011.001.00---------------------------1.00------------------------------------
....................................................................................................................................................................................................CAAGGCCCAGCTACACTGTATCA...............................2311.001.00-----1.00----------------------------------------------------------
........................................................................................................TTGCATCCCTCAGAGGTTT...............................................................................................................................191.000.00-------------------------1.00--------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGGGAC..........................................................................................................2311.003.00--------------1.00-------------------------------------------------
...................................................................................................................AGAGGCACGGAAGGAAATC....................................................................................................................191.000.001.00---------------------------------------------------------------
.....................................................................................................................................................................................................................GTATCAGGAAGTGGACGAGGTT...............2211.002.00------------------1.00---------------------------------------------
..............................AGTCAGGATTCAAACCAAAGCAG.....................................................................................................................................................................................................2311.001.00---------------1.00------------------------------------------------
.........................................................................................................................................................................................................................CAGGAAGTGGACGAGGCCA..............1911.001.00------1.00---------------------------------------------------------
........................................................................................................................CACGGAAGGACAGAATTGAG..............................................................................................................2011.001.00--------------------------1.00-------------------------------------
......................................................................CTTTTGATCCATGCTGCTATGC..............................................................................................................................................................2211.001.00------------------------1.00---------------------------------------
...................................................................................................................................................................ATTCTTCTCTGCTCCTTCCCAAT................................................................231.000.00-----------1.00----------------------------------------------------
.........................................................................................................................................................................................................................CAGGAAGTGGACGAGGCCAT.............2011.001.00------------------------------------------------------------1.00---
.........................................................................................................................................................................................................................CAGGAAGTGGACGAGGCCATT............2111.001.00---1.00------------------------------------------------------------
.........................................................................................................................ACGGAAGGACAGAATTGAGGGGCTTA.......................................................................................................2611.004.00------------1.00---------------------------------------------------
...........................................................................................................................................................................CTGCTCCTTCCCAAGGCTG............................................................1920.500.50----------------------0.50-----------------------------------------

Antisense strand
AACTGTCTTGGCCAACATCGGTCAGTAAAGAGTCAGGATTCAAACCAAAGCAGTCAGGGTTCAGCCCATGCTTTTGATCCATGCTGCTATGCAACCTCTCATGTTTGCATCCCTCAGAGGCACGGAAGGACAGAATTGAGGGGCTCAACAAGGGAAATGATTCATTCTTCTCTGCTCCTTCCCAAGGCTGGAGGGCCAAGGCCCAGCTACACTGTATCAGGAAGTGGACGAGGCCATTCACCAGCTTGTG
.................................................................((.(((((((((...((((...((((........))))...))))...))))))))).)).............................................................................................................................
................................................................65...............................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189786SRR189787SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR029128(GSM416757)
H520. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
..........................................................................TGATCCATGCTGCTACA............................................................................................................................................................... 178.000.00-5.003.00-------------------------------------------------------------
.........................................................................................................................................................................................................................................CCATTCACCAGCTTGACAG 194.000.00---1.00----------------2.00-----------------------1.00-------------------
...............................GTCAGGATTCAAACCGCGG........................................................................................................................................................................................................ 192.000.00---------------------------------------1.00---------------------1.00--
.............................................................................TTGCATAGCAGCATGGA............................................................................................................................................................ 1711.001.00----------------1.00-----------------------------------------------
..........................................................................TGATCCATGCTGCTAGG............................................................................................................................................................... 171.000.00----------------1.00-----------------------------------------------
.............................................................................................................................................................................................GGAGGGCCAAGGCCCCGC........................................... 181.000.00--------------------------------1.00-------------------------------
.......................................................................................................................................................GAAGAATGAATCATTTCCC................................................................................ 1911.001.00----------------------------------------------1.00-----------------
.......................................................................................................................................................................TTCTCTGCTCCTTCCCTG................................................................. 181.000.00-------------------------------------1.00--------------------------
.......................................................................................................................................................................TTCTCTGCTCCTTCCCTC................................................................. 181.000.00----------------------------1.00-----------------------------------
......................................................................................CTATGCAACCTCTCAGTA.................................................................................................................................................. 181.000.00------------------------------1.00---------------------------------
........................................................................TAGCAGCATGGATCAAA................................................................................................................................................................. 1720.500.50--0.50-------------------------------------------------------------