ID: uc001vxg.2_intron_1_0_chr14_20923863_f
GENE: (2)
chr14:20923813-20924122+


(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(9)
B-CELL 		(3)
BRAIN 		(16)
BREAST 		(37)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCGTGGGAAAAAGGGAGCGGTGGCGGAAGACGGGGATGAGCTCAGGACAGGTAAGGGAATGAAATCAGCCCTTCTTCCTAGAAGCTGCGGCGGGGGTGTTTGTCATTCCCTTGATGTACGGTAAGTACGGGCCGACTCATTTTTGCAGGGGTTTGTGAAGAAGTCGCAGGAACCGTAGGCTTTCGTTGGGTCTATAGTTAACGCCGGATCGCAGTTGGAAACCACCAGCTTTTTGTCAGTATATATTACTCATTTTATAGAGCCAGAGGCCAAGAAGAGTAAGACGGCCGCAAAGAAAAATGACAAAGAG
................................................................................((((((.(((((((((((.....)))))))....(((((.....))))).)))).............((..(((((((.....)))))))..))...))))))...............................................................................................................................
.............................................................................78.......................................................................................................183.............................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189787SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM532876(GSM532876)
G547T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................................................................................AGCTGCGGCGGGGGTCG...................................................................................................................................................................................................................171134.001.00125.00-----------2.001.00-----------1.00---------------1.00-1.00-1.00---------1.00--------------------------------------1.00------------------
..................................................................................AGCTGCGGCGGGGGTCGC..................................................................................................................................................................................................................18164.001.0055.00------------1.00-----------1.00-------------1.00--------------1.00-----1.00--------1.00-1.00-----1.00----------------------1.00------------
...........................AGACGGGGATGAGCTGTG.........................................................................................................................................................................................................................................................................1818.000.00----9.009.00-----------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTCGCG.................................................................................................................................................................................................................19116.001.0011.00--------------------------------1.00-------------------------------1.00---------1.00----------------1.00-------------1.00------
..................................................................................AGCTGCGGCGGGGGTTG...................................................................................................................................................................................................................1716.001.004.00-------------1.00------------------------------1.00-------------------------------------------------------------------
.......................................................................................CGGCGGGGGTGTTTGGG..............................................................................................................................................................................................................176.000.00--------------1.00-----1.00---------------1.00-----------1.00---------------------------------------1.00-------------1.00----------
.........................................................................................................................................................................................................CGCCGGATCGCAGTTGGAAACCACCAGCTTTTTGTCAGTATATATTACTCATTTTATAG..................................................5915.005.00-----------5.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TCTATAGTTAACGCCGGATCGCAGTTGGAAACCACCAGCTTTTTGTCAGTATATATTACTCATTTTATAG..................................................7015.005.00---------5.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................................GAAGAAGTCGCAGGAACCGTAGG...................................................................................................................................2314.004.00---4.00-------------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTGG...................................................................................................................................................................................................................174.000.003.00-----------1.00----------------------------------------------------------------------------------------------------
................GCGGTGGCGGAAGACATC....................................................................................................................................................................................................................................................................................183.000.00------------------3.00----------------------------------------------------------------------------------------------
.........................................................................CTTCCTAGAAGCTGCGGC...........................................................................................................................................................................................................................1813.003.00---------------3.00-------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTGGC..................................................................................................................................................................................................................183.000.002.00----------------------------------------------------------------------------------------1.00-----------------------
.............................................................................................................................TACGGGCCGACTCATTTTTG.....................................................................................................................................................................2013.003.00---3.00-------------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTCGG..................................................................................................................................................................................................................1812.001.00---------------------------------------1.00---------------------------------------------------1.00---------------------
........................................................................................GGCGGGGGTGTTTGTTGT............................................................................................................................................................................................................182.000.00--------2.00--------------------------------------------------------------------------------------------------------
...................................................................................GCTGCGGCGGGGGTGTGG.................................................................................................................................................................................................................182.000.00---------------------------2.00-------------------------------------------------------------------------------------
.............................................................................................................................TACGGGCCGACTCATTTTTGCAGGGGT..............................................................................................................................................................2712.002.00-----------------2.00-----------------------------------------------------------------------------------------------
..GTGGGAAAAAGGGAGCGG..................................................................................................................................................................................................................................................................................................1812.002.00------------------------1.00------------------------------------------------------------------------1.00---------------
..............................................................................................................................................................AGAAGTCGCAGGAACCGT......................................................................................................................................1812.002.00----------2.00------------------------------------------------------------------------------------------------------
...............................GGGGATGAGCTCAGGACAG....................................................................................................................................................................................................................................................................1912.002.00------------------------------------------------------------------1.00-1.00--------------------------------------------
..................................................................................AGCTGCGGCGGGGGTCA...................................................................................................................................................................................................................1712.001.00--------------------1.00-------------------1.00------------------------------------------------------------------------
.............................ACGGGGATGAGCTCAGGACAGA...................................................................................................................................................................................................................................................................222.000.00-----------------------2.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................CCAGAGGCCAAGAAGAGTAA............................2012.002.00----2.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................AGCCAGAGGCCAAGAAGAG...............................1912.002.00------2.00----------------------------------------------------------------------------------------------------------
...........................AGACGGGGATGAGCTGTTA........................................................................................................................................................................................................................................................................192.000.00--------------------------------------------2.00--------------------------------------------------------------------
...................................ATGAGCTCAGGACAGGTAAG...............................................................................................................................................................................................................................................................2012.002.00---2.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................AAGAGTAAGACGGCCGCA..................1812.002.00--------------------------2.00--------------------------------------------------------------------------------------
........................................................................................GGCGGGGGTGTTTGTGGT............................................................................................................................................................................................................182.000.00--------1.00----------------------1.00---------------------------------------------------------------------------------
..........................AAGACGGGGATGAGCTCAGG........................................................................................................................................................................................................................................................................2012.002.00-------------------------------------------------1.00---------------------------------1.00-----------------------------
........................................................................................................................................................................................................................................................................................AAGACGGCCGCAAAGAAAAATG........2212.002.00----------------------------2.00------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTTTC..................................................................................................................................................................................................................1811.001.001.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CCGGATCGCAGTTGGAAACCACCAG..................................................................................2511.001.00--------------------------------------1.00--------------------------------------------------------------------------
.................................GGATGAGCTCAGGACAG....................................................................................................................................................................................................................................................................1711.001.00----------------1.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CAGCTTTTTGTCAGTATATATTACT............................................................2511.001.00------------------------------------------------------------------------------------------------1.00----------------
...................................................................................................................................................................................................................................................................GAGCCAGAGGCCAAGAAGAGTAAGACG........................2711.001.00-------------------1.00---------------------------------------------------------------------------------------------
..............................CGGGGATGAGCTCAGGACA.....................................................................................................................................................................................................................................................................1911.001.00------------------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................TCGTTGGGTCTATAGTGCTA............................................................................................................201.000.00-1.00---------------------------------------------------------------------------------------------------------------
...........................................AGGACAGGTAAGGGAATGAA.......................................................................................................................................................................................................................................................2011.001.00-------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................AAGAAGAGTAAGACGGCCGCA..................2111.001.00------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................................TACGGGCCGACTCATTTTTGC....................................................................................................................................................................2111.001.00---1.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GCTTTCGTTGGGTCTATAGTTAACTCTG........................................................................................................281.000.00----------------1.00------------------------------------------------------------------------------------------------
......................GCGGAAGACGGGGATGTA..............................................................................................................................................................................................................................................................................181.000.00--------------------------------------1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................TAAGACGGCCGCAAAGAAAAATG........2311.001.00-----------------------------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................................AAGAAGTCGCAGGAACCG.......................................................................................................................................1811.001.00---1.00-------------------------------------------------------------------------------------------------------------
..........................AAGACGGGGATGAGCTGT..........................................................................................................................................................................................................................................................................181.000.00------------------------------------------------------------------------------------1.00----------------------------
...........AGGGAGCGGTGGCGGAAGAAG......................................................................................................................................................................................................................................................................................211.000.00-------1.00---------------------------------------------------------------------------------------------------------
........AAAAGGGAGCGGTGGCGGATT.........................................................................................................................................................................................................................................................................................211.000.00-------------------------------------------------------------------1.00---------------------------------------------
..........................................................ATGAAATCAGCCCTTAC...........................................................................................................................................................................................................................................171.000.00---------------------1.00-------------------------------------------------------------------------------------------
......................................................................................GCGGCGGGGGTGTTTGG...............................................................................................................................................................................................................171.000.00--------------1.00--------------------------------------------------------------------------------------------------
............................GACGGGGATGAGCTCAGGACAGA...................................................................................................................................................................................................................................................................231.000.00-----------------------------------------------------------1.00-----------------------------------------------------
...........................................................................................................CCCTTGATGTACGGTAAGT........................................................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................GTAAGACGGCCGCAAAGAAAAATGACA.....2711.001.00------1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CGGATCGCAGTTGGAAACCACCAG..................................................................................2411.001.00----------------------------------1.00------------------------------------------------------------------------------
...........AGGGAGCGGTGGCGGGCGC........................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------1.00-------------
.................................GGATGAGCTCAGGACAGGTAAGGGAATGAAAT.....................................................................................................................................................................................................................................................3211.001.00-------------1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................CAGGGGTTTGTGAAGAAGAGCA...............................................................................................................................................221.000.00----------------------1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CAGAGGCCAAGAAGAGTAA............................1911.001.00----------------1.00------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................TATAGAGCCAGAGGCCAAGAAGAGT..............................2511.001.00---------------------------------------------------------------------------------------1.00-------------------------
........................................................................................................................................................TTGTGAAGAAGTCGCAGGAACCGTAGG...................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------------------1.00-----------
...............................................................................................................................................................................................................ATCGCAGTTGGAAACCACCAG..................................................................................2111.001.00----------------------------------------------------------------------------------1.00------------------------------
........................................................................................................................................................................................................................................................................................AAGACGGCCGCAAAGAAAAATGACA.....2511.001.00---------------------------------------------------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................AACGCCGGATCGCAGTTGGAAAC........................................................................................2311.001.00-----------------------------------1.00-----------------------------------------------------------------------------
.................................GGATGAGCTCAGGACAGGTAAGGGAATGAAATCAG..................................................................................................................................................................................................................................................3511.001.00--------------------------------------------------------------------------1.00--------------------------------------
...............AGCGGTGGCGGAAGACG......................................................................................................................................................................................................................................................................................1711.001.001.00----------------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGT.....................................................................................................................................................................................................................1511.001.00--------------1.00--------------------------------------------------------------------------------------------------
..GTGGGAAAAAGGGAGCGGTGGCG.............................................................................................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................................................................................AGAGTAAGACGGCCGCAAAGAAAAATGACA.....3011.001.00------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CAGAGGCCAAGAAGAGTAAGACG........................2311.001.00----------1.00------------------------------------------------------------------------------------------------------
..GTGGGAAAAAGGGAGCGGT.................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------1.00--------------
..................................................................................AGCTGCGGCGGGGGTCC...................................................................................................................................................................................................................1711.001.001.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................TAAGACGGCCGCAAAGAAAAACG........231.000.00-1.00---------------------------------------------------------------------------------------------------------------
........................GGAAGACGGGGATGAGCT............................................................................................................................................................................................................................................................................1811.001.00-------------------------------------1.00---------------------------------------------------------------------------
.........................GAAGACGGGGATGAGCT............................................................................................................................................................................................................................................................................1711.001.00-------------------1.00---------------------------------------------------------------------------------------------
..........................AAGACGGGGATGAGCTCAGGACAGAG..................................................................................................................................................................................................................................................................261.000.00--------------------------------------------------------------------------------------1.00--------------------------
........................................................................................................................GTAAGTACGGGCCGAAAAA...........................................................................................................................................................................191.000.00------------------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................AGAGGCCAAGAAGAGTAAGACG........................2211.001.00-------1.00---------------------------------------------------------------------------------------------------------
..................................................GTAAGGGAATGAAATCAGC.................................................................................................................................................................................................................................................1911.001.00-----------------------------1.00-----------------------------------------------------------------------------------
.................................GGATGAGCTCAGGACAGGTAAG...............................................................................................................................................................................................................................................................2211.001.00------------------------------1.00----------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTCGCA.................................................................................................................................................................................................................1911.001.001.00----------------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTC....................................................................................................................................................................................................................1611.001.00--------------------1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................AACGCCGGATCGCAGTTGGAAACCACCAGCTTTTTGTCAGTATATATTACTCATTTTATAGA.................................................6211.001.00---------------------------------------------------------------------------------------------------------1.00-------
...............................................................................................................................................TGCAGGGGTTTGTGAAG......................................................................................................................................................1721.001.00---------------------------------1.00-------------------------------------------------------------------------------
...............................GGGGATGAGCTCAGGTCTT....................................................................................................................................................................................................................................................................191.000.00-------------------------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................AGACGGCCGCAAAGAAAAATGACA.....2411.001.00-------------------1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................AAGACGGCCGCAAAGAAGGG..........201.000.00------1.00----------------------------------------------------------------------------------------------------------
..GTGGGAAAAAGGGAGCGGTGGCGGAAGACGGGG...................................................................................................................................................................................................................................................................................3311.001.00-----------------1.00-----------------------------------------------------------------------------------------------
.......................CGGAAGACGGGGATGAGC.............................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------1.00--------------------------------------------------------------
.................................................................................AAGCTGCGGCGGGGGGTCG..................................................................................................................................................................................................................191.000.00-------------------------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................GAGGCCAAGAAGAGTAAGA..........................1911.001.00----------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GGCCGCAAAGAAAAATGA.......1811.001.00-------1.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................ACGGGCCGACTCATTTTTGCAGGGG...............................................................................................................................................................2511.001.00----------------------------------1.00------------------------------------------------------------------------------
.......................CGGAAGACGGGGATGAGCTCA..........................................................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00---------------------------------------------------------------------------
...........................AGACGGGGATGAGCTCAGGACAGCGGG................................................................................................................................................................................................................................................................271.000.00----------------------1.00------------------------------------------------------------------------------------------
.........................GAAGACGGGGATGAGCTCAGG........................................................................................................................................................................................................................................................................2111.001.00----------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................GTGAAGAAGTCGCAGGAACCGTAGGCT.................................................................................................................................2711.001.00---1.00-------------------------------------------------------------------------------------------------------------
........................................................................................GGCGGGGGTGTTTGTGGTC...........................................................................................................................................................................................................191.000.00--------1.00--------------------------------------------------------------------------------------------------------
...........AGGGAGCGGTGGCGGTTGT........................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------------1.00-----
...........................................................................................................................................................................ACCGTAGGCTTTCGTTGGGTC......................................................................................................................2111.001.00---------------------------------------------------------------------------------------------1.00-------------------
.......................CGGAAGACGGGGATGAGCTCAGGA.......................................................................................................................................................................................................................................................................2411.001.00-----------------------------------------1.00-----------------------------------------------------------------------
..............................................................AATCAGCCCTTCTTCTGT......................................................................................................................................................................................................................................181.000.00---------------------1.00-------------------------------------------------------------------------------------------
..........................................CAGGACAGGTAAGGGAATGAAATCAGC.................................................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------------------------------------------------1.00---------
..............................CGGGGATGAGCTCAGGACAGGTAAGGG.............................................................................................................................................................................................................................................................2711.001.00---------------------------------------------------1.00-------------------------------------------------------------
......................................................................................GCGGCGGGGGTGTTTGGG..............................................................................................................................................................................................................181.000.00------------------------------------1.00----------------------------------------------------------------------------
..GTGGGAAAAAGGGAGCGGTGG...............................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------1.00----
.........................GAAGACGGGGATGAGCTC...........................................................................................................................................................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TTAACGCCGGATCGCAGTTGGAAACCACCAGC.................................................................................3211.001.00------------------------------------------------------------------------------1.00----------------------------------
..............GAGCGGTGGCGGAAGACGGG....................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------1.00------------------------------------------------------------------
........................................................................................GGCGGGGGTGTTTGTTC.............................................................................................................................................................................................................171.000.00--------1.00--------------------------------------------------------------------------------------------------------
..................................................................................AGCTGCGGCGGGGGTA....................................................................................................................................................................................................................1611.001.00----------------------------------------1.00------------------------------------------------------------------------
..........................AAGACGGGGATGAGCTGTG.........................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00-----------------------------------------------------------------------------
..........................AAGACGGGGATGAGCTCAGGACA.....................................................................................................................................................................................................................................................................2311.001.00-------------------------------------------------------------------------------------1.00---------------------------
...........................AGACGGGGATGAGCTGTGA........................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------------1.00--------------------------------------------------------
................................................................................GAAGCTGCGGCGGGGGGA....................................................................................................................................................................................................................181.000.00--------------------------------------------------------------------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................GGCCGCAAAGAAAAATGACAAA...2211.001.00----------------------------------------------------1.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................................CGCAAAGAAAAATGACAAAGAG2211.001.00-----------------------------------------------------------------------------------------------1.00-----------------
...................................................................................................................................................................................................................................................................GAGCCAGAGGCCAAGAAGAGTAAG...........................2411.001.00-------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................AGTAAGACGGCCGCAAAGA..............1911.001.00-----------------------------1.00-----------------------------------------------------------------------------------
............GGGAGCGGTGGCGGAAGACGGGGATG................................................................................................................................................................................................................................................................................2611.001.00-------------------------------------------------------------------------1.00---------------------------------------
..................................................................................AGCTGCGGCGGGGGTAG...................................................................................................................................................................................................................1711.001.00------------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................AAGAAGTCGCAGGAA..........................................................................................................................................1540.750.75----------------------0.75------------------------------------------------------------------------------------------
.............................ACGGGGATGAGCTCAGG........................................................................................................................................................................................................................................................................1720.500.50----------------------------------------------------------------------------------------------------------------0.50
....................................................................................................................................................................................................................................................................AGCCAGAGGCCAAGAAGA................................1820.500.50--------------------------------------------------------------------------------------------------------------0.50--
................................GGGATGAGCTCAGGACA.....................................................................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------------------0.50---

Antisense strand
GCGTGGGAAAAAGGGAGCGGTGGCGGAAGACGGGGATGAGCTCAGGACAGGTAAGGGAATGAAATCAGCCCTTCTTCCTAGAAGCTGCGGCGGGGGTGTTTGTCATTCCCTTGATGTACGGTAAGTACGGGCCGACTCATTTTTGCAGGGGTTTGTGAAGAAGTCGCAGGAACCGTAGGCTTTCGTTGGGTCTATAGTTAACGCCGGATCGCAGTTGGAAACCACCAGCTTTTTGTCAGTATATATTACTCATTTTATAGAGCCAGAGGCCAAGAAGAGTAAGACGGCCGCAAAGAAAAATGACAAAGAG
................................................................................((((((.(((((((((((.....)))))))....(((((.....))))).)))).............((..(((((((.....)))))))..))...))))))...............................................................................................................................
.............................................................................78.......................................................................................................183.............................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189787SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM532876(GSM532876)
G547T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
............................................................................................................................................TTTTGCAGGGGTTTGTGAACTGA................................................................................................................................................... 239.000.00-5.004.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................AAACCCCTGCAAAAATGA............................................................................................................................................................ 1825.005.00-3.501.50--------------------------------------------------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACTTA................................................................................................................................................... 233.000.00-2.001.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................ACGGCCGCAAAGAAAAATGACAAT... 242.000.00------------------------------------------2.00----------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAAGTTA................................................................................................................................................... 231.000.00--1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................GTTTGTCATTCCCTTTTA................................................................................................................................................................................................... 181.000.00---------------------1.00-------------------------------------------------------------------------------------------
...........................................................TGAAATCAGCCCTTCTGT......................................................................................................................................................................................................................................... 181.000.00--------------------------------1.00--------------------------------------------------------------------------------
......................................................................................................TCATTCCCTTGATGTACA.............................................................................................................................................................................................. 181.000.00--------------------------------------------------------------1.00--------------------------------------------------
...................................................................................................................................CCGACTCATTTTTGCAGCAA............................................................................................................................................................... 201.000.00-------------1.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................TTTTTGCAGGGGTTTAGA......................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACCGA................................................................................................................................................... 231.000.00-1.00---------------------------------------------------------------------------------------------------------------
.........................................................................................................................................CATTTTTGCAGGGGTTTG........................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CTGACAAAAAGCTGGTGGT....................................................................... 1911.001.00--------------------------------------------------------------------------------------------------------1.00--------
...........................................................................................................................................................................................................................ACTGACAAAAAGCTGGTGGTT...................................................................... 2111.001.00------------------------------------------------------------------------------------------1.00----------------------
....TCCCCGTCTTCCGCCACCGCTCCCTTTTTCCC.................................................................................................................................................................................................................................................................................. 3211.001.00----------------------------------------------------------1.00------------------------------------------------------
..........................................CATTCCCTTACCTGTCCTG......................................................................................................................................................................................................................................................... 1911.001.00----------------------------------------------------------------1.00------------------------------------------------
...........................................................................................................................................TTTTTGCAGGGGTTTAAAG........................................................................................................................................................ 191.000.00--1.00--------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................GAAAAATGACAAAGAGGCC 191.000.00-------------------------------------------------------------------------------1.00---------------------------------
...........................................................................................................................................TTTTTGCAGGGGTTTCGG......................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACTGT................................................................................................................................................... 231.000.00--1.00--------------------------------------------------------------------------------------------------------------
......................GCGGAAGACGGGGATGCGC............................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------1.00-----------------------------------------------------------
......................GCGGAAGACGGGGATTCCA............................................................................................................................................................................................................................................................................. 191.000.00----------------------------------------------------------------------1.00------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACCTA................................................................................................................................................... 231.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................AGGAAGAAGGGCTGATTTC....................................................................................................................................................................................................................................... 1911.001.00-------------------------------------------------------------1.00---------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACTT.................................................................................................................................................... 221.000.00--1.00--------------------------------------------------------------------------------------------------------------
...........................................................TGAAATCAGCCCTTCTGA......................................................................................................................................................................................................................................... 181.000.00--------------------------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................TTTTTGCAGGGGTTTCGA......................................................................................................................................................... 181.000.00-1.00---------------------------------------------------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAAGTT.................................................................................................................................................... 221.000.00-1.00---------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................GAAAAATGACAAAGAGCCT 191.000.00---------------------------------------------------------------------------------1.00-------------------------------
..........................................................................................................................................ATTTTTGCAGGGGTTTTA.......................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................TTTTGCAGGGGTTTGTGAACTCA................................................................................................................................................... 231.000.00-1.00---------------------------------------------------------------------------------------------------------------
.....................................GAGCTCAGGACAGGTCCCC.............................................................................................................................................................................................................................................................. 191.000.00----------------------------------------------------------------------------1.00------------------------------------
.....................................................................................................................................................................................................................................................................CTCTTCTTGGCCTCTGGC............................... 1820.500.50---------------------------------------------------------------------------------------------------------------0.50-