ID: uc001vrn.2_intron_2_0_chr13_111545611_r.3p
GENE: (3)
chr13:111545561-111545810-


(2)
BRAIN 		(5)
BREAST 		(12)
CELL-LINE 		(10)
CERVIX 		(6)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CCCAAATCTTGCTTAGAAATCAAATGTATATAAGAGAAGTTAGTTACAGAGCTAGATTGATTAACTACTTCTTTAATGAAGATTTGCTATGAATTTGTTTACTCTTTCATACCACCTTCAGATAGCTAGTCAGTTCAGCAGGAGCAGAGACCAGGTTAGCACGCGGATGGGGTGTAATTCAGTGTTTTTGTGTTGTACAGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAGG
............................................................................(((((...((.((((((............)))))).)).)))))........(((.((((.....))))...)))...................................................................................................
.......................................................................72.............................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................GTCAGTTCAGCAGGAACAG.......................................................................................................195.000.00--4.00-----------------------------------1.00-----------------
..................................................................................................................................CAGTTCAGCAGGAGCAGT......................................................................................................1815.001.00-------------1.00------------------1.00---1.001.00---1.00--------------
............................................................................TGAAGATTTGCTATGAATTTGTTT......................................................................................................................................................2414.004.00---3.001.00---------------------------------------------------
................................................................................................................................GTCAGTTCAGCAGGAACA........................................................................................................183.000.00--1.00---------------------1.00----------1.00--------------------
...................................................................................................................................AGTTCAGCAGGAGCAGT......................................................................................................1722.500.50---------------1.00--------------1.00----------------------0.50--
.............................................................................................................................................................................................................GAAATGCCAGTGGCCTGAC..........................1912.002.00-------2.00------------------------------------------------
.....................................................................................................................................................................................................................AGTGGCCTGACAGCAGCAGACA...............2212.002.00---1.00--1.00-------------------------------------------------
...................................................................................................................................................AGACCAGGTTAGCACGCGGATGGGGCG............................................................................272.000.00-2.00------------------------------------------------------
.....................................................................................................................................TTCAGCAGGAGCAGAGACCAGGTCAG...........................................................................................262.000.002.00-------------------------------------------------------
................................................................................................................................................................ACGCGGATGGGGTGTAATTCAGTGTTT...............................................................2712.002.00-----2.00--------------------------------------------------
...............................................................................................................................................................................................................AATGCCAGTGGCCTGACAGCAGCAGACTGC.............3012.001.00-2.00------------------------------------------------------
...................................................................................................................CTTCAGATAGCTAGTCAG.....................................................................................................................1811.001.00--------1.00-----------------------------------------------
................................................................................................................................................................................................TTGTACAGCCTGAGAAATGC......................................2011.001.00----------------1.00---------------------------------------
.................................................................................................................................................AGAGACCAGGTTAGCACGCGGATGGGGTGTA..........................................................................3111.001.00-------------------------------------------------1.00------
........................................................................................................................................AGCAGGAGCAGAGACCAG................................................................................................1811.001.00-------------1.00------------------------------------------
...............................................................................................................................................................................................................AATGCCAGTGGCCTGAC..........................1711.001.00---------------------------1.00----------------------------
.....................................................................................................................................TTCAGCAGGAGCAGAGACCAGGTTA............................................................................................2511.001.00----------------------------1.00---------------------------
..................................................................................................................................................................GCGGATGGGGTGTAATTTG.....................................................................191.000.00----------------------------------------------1.00---------
............................................................................................................ATACCACCTTCAGATAGCTAGTCAGCTC..................................................................................................................281.000.001.00-------------------------------------------------------
.....................................................................................................................................................................................................................AGTGGCCTGACAGCAGCAGAC................2111.001.00------1.00-------------------------------------------------
...................................................................................................................................................................CGGATGGGGTGTAATTCAGTGT.................................................................2211.001.00-----1.00--------------------------------------------------
..................................................................................................................................................................................................................GCCAGTGGCCTGACAGCAGCAGACATTGCAC.........3111.001.00-----------------------------------------------1.00--------
..............................................CAGAGCTAGATTGATTAACTA.......................................................................................................................................................................................2111.001.00----1.00---------------------------------------------------
...........................................................................................AATTTGTTTACTCTTTCATACCACCTTCA..................................................................................................................................2911.001.00-------------------------------------------1.00------------
.................................................................................................................................TCAGTTCAGCAGGAGCAGA......................................................................................................1911.001.00------------------------------------------------1.00-------
.......................................................................................................................................................................................................................TGGCCTGACAGCAGCAGACTGCA............231.000.00-1.00------------------------------------------------------
................................................................................................................................................................................................................ATGCCAGTGGCCTGACAGCAGCAGACTGCA............301.000.00-1.00------------------------------------------------------
..............................................................................................................................................................GCACGCGGATGGGGTGTAATTCA.....................................................................2311.001.00------------------------------------------1.00-------------
......................................................................................................................................................................................................................GTGGCCTGACAGCAGCAGAC................2011.001.00-----------------------------1.00--------------------------
..........................................................................................................................................................................................................TGAGAAATGCCAGTGGCCTGACAGCA......................2611.001.00--------------------------------------------1.00-----------
.....................................................................................................................................................................................................................AGTGGCCTGACAGCAGCAGACAT..............2311.001.00---1.00----------------------------------------------------
..................................................................................................................................CAGTTCAGCAGGAGCAGAGACCAGG...............................................................................................2511.001.00----------------------------------1.00---------------------
.......................................................................................................................................................................TGGGGTGTAATTCAGTGTGAGT.............................................................221.000.00--------------------1.00-----------------------------------
..................................................................................................................................CAGTTCAGCAGGAGCAGA......................................................................................................1811.001.00----------------------1.00---------------------------------
.....ATCTTGCTTAGAAATACA...................................................................................................................................................................................................................................181.000.00-----------1.00--------------------------------------------
................................................................................................................................GTCAGTTCAGCAGGAAAG........................................................................................................181.000.00--1.00-----------------------------------------------------
.................................................................................................................................................................................................TGTACAGCCTGAGAAATGCCAGTGGCCCGAC..........................311.000.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................CAGCCTGAGAAATGCCAGTGGCCTGACAGC.......................3011.001.001.00-------------------------------------------------------
................................AGAGAAGTTAGTTACAGAGCTAGATTGACTA...........................................................................................................................................................................................311.000.001.00-------------------------------------------------------
.........................................................................................................................................................................................TTTTGTGTTGTACAGCCTGAGAA..........................................2311.001.00----------------------------------------1.00---------------
....................................................................................................................................................................................................................CAGTGGCCTGACAGCAGCAG..................2011.001.00---------------------------------------1.00----------------
..................................................................................................................................................................GCGGATGGGGTGTAAAAC......................................................................181.000.00-------------------1.00------------------------------------
............TTAGAAATCAAATGTATATAAGAG......................................................................................................................................................................................................................2411.001.00------------1.00-------------------------------------------
...................................................................................................................................................AGACCAGGTTAGCACGCGGACGGG...............................................................................241.000.001.00-------------------------------------------------------
......................AATGTATATAAGAGAAGTTAGT..............................................................................................................................................................................................................2211.001.00----1.00---------------------------------------------------
................................................................................................................................GTCAGTTCAGCAGGAACAA.......................................................................................................191.000.00--------------1.00-----------------------------------------
...................................................................................................................................AGTTCAGCAGGAGCAGAGACCAGGTT.............................................................................................2611.001.00---------1.00----------------------------------------------
.............................................................................GAAGATTTGCTATGAATTTG.........................................................................................................................................................2011.001.00-----------------------1.00--------------------------------
...........................................................................................................................................................................................................................................TTGCACAAACCCAGGTT171.000.00-------------------------1.00------------------------------
.......................................................................................................................................................................TGGGGTGTAATTCAGTGTTTTTGTGT.........................................................2611.001.00------------------1.00-------------------------------------
............................................................................................................................................................................................................AGAAATGCCAGTGGCCTGACAGCAGCAGACAT..............3211.001.00---------------------------------------------1.00----------
.......................................................................................................................................................................................................................TGGCCTGACAGCAGCAGACATTGCAC.........2611.001.00-1.00------------------------------------------------------
................................................................................................................................................................................................................ATGCCAGTGGCCTGACAGCAGCAGACATTG............3011.001.00-------------------------------1.00------------------------
...................................................................................................................................AGTTCAGCAGGAGCAGAGACCAGGTTAGC..........................................................................................2911.001.001.00-------------------------------------------------------
..................................................................................................................................................................GCGGATGGGGTGTAATTGGTA...................................................................211.000.00----------1.00---------------------------------------------
..................................................................................................................................CAGTTCAGCAGGAGCAGTA.....................................................................................................1911.001.00-----------------1.00--------------------------------------
............................................................................................................ATACCACCTTCAGATAGCTAGTCAGT....................................................................................................................2611.001.00---------1.00----------------------------------------------
.....ATCTTGCTTAGAAATAAA...................................................................................................................................................................................................................................181.000.00-----------1.00--------------------------------------------
................................................................................................................................GTCAGTTCAGCAGGAAAT........................................................................................................181.000.00--1.00-----------------------------------------------------
...............................................................................................................................................................................................................AATGCCAGTGGCCTGACAGCAGCAGAC................2711.001.001.00-------------------------------------------------------
...............................................................................................................................AGTCAGTTCAGCAGGAGCAGAGACCAGGTC.............................................................................................301.000.001.00-------------------------------------------------------
.......................................................................................................................................................................................................GCCTGAGAAATGCCAGTGGCCTGACAGCAGCAG..................3311.001.00---------------------------------1.00----------------------
..................................................................................................................................CAGTTCAGCAGGAGCAG.......................................................................................................1711.001.00---------------------1.00----------------------------------
....................................................................................................ACTCTTTCATACCACTTCA...................................................................................................................................191.000.00--------1.00-----------------------------------------------
................................................................................................................................GTCAGTTCAGCAGGAGCAGAGACCAGGTTAGCA.........................................................................................3311.001.00--------------------------1.00-----------------------------
..............................................................................AAGATTTGCTATGAATTTGTTTACTCTCTC..............................................................................................................................................301.000.001.00-------------------------------------------------------
.................................GAGAAGTTAGTTACAGAGCT.....................................................................................................................................................................................................2011.001.00------------1.00-------------------------------------------
...........................................................................................................................AGCTAGTCAGTTCAGCAGGAGCAGAGACCAGGT..............................................................................................3311.001.001.00-------------------------------------------------------
...................................................................................................................................AGTTCAGCAGGAGCAG.......................................................................................................1620.500.50----------------------------------------------------0.50---
.....................................................................................................................................................................................................................AGTGGCCTGACAGCAGCAG..................1920.500.50------0.50-------------------------------------------------
..................................................................................................................................CAGTTCAGCAGGAGCA........................................................................................................1620.500.50---------------------------------------------------0.50----
.................................................................................................................................TCAGTTCAGCAGGAGC.........................................................................................................1630.330.33------------------------------------------------------0.33-
...................................................................................................................................................................................................................CCAGTGGCCTGACAGC.......................1640.250.25-------0.25------------------------------------------------
..................................................................................................................................CAGTTCAGCAGGAGC.........................................................................................................1570.140.14-------------------------------------------------------0.14

Antisense strand
CCCAAATCTTGCTTAGAAATCAAATGTATATAAGAGAAGTTAGTTACAGAGCTAGATTGATTAACTACTTCTTTAATGAAGATTTGCTATGAATTTGTTTACTCTTTCATACCACCTTCAGATAGCTAGTCAGTTCAGCAGGAGCAGAGACCAGGTTAGCACGCGGATGGGGTGTAATTCAGTGTTTTTGTGTTGTACAGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAGG
............................................................................(((((...((.((((((............)))))).)).)))))........(((.((((.....))))...)))...................................................................................................
.......................................................................72.............................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................AAATCAAATGTATATTCT........................................................................................................................................................................................................................ 181.000.00--------------------------------------------------1.00-----
.......................................................................TTTAATGAAGATTTGACGA................................................................................................................................................................ 191.000.00----------1.00---------------------------------------------