ID: uc001vrd.2_intron_9_0_chr13_111335482_r.3p
GENE: CARS2(5)
chr13:111335432-111335681-


(4)
AGO2.ip 		(2)
B-CELL 		(3)
BREAST 		(17)
CELL-LINE 		(6)
CERVIX 		(3)
HEART 		(2)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
TESTES

Sense strand
GTGAGCTGTGATTGTACCACTGCACTCCAGCCTGAGCAACAGCAAGACCCTGTCTATAAAAATATAAATACTATATATGTATATGGGGCCAAATGCTATGTTCTGTATTTAAATTCTAATTACTTGTTAGATGTTAAGGTTGTCAATATGCTGATATTCAGACTGAGAAGTGATGAATTCATAATTGTCTTTATAAACAGGCAATGTCTACTTCGATCTGAAGTCTAGAGGAGACAAGTATGGCAAATTG
..................................................................(((((.(((((.((((.((....)).)))))))))...)))))..(((((..(((((((.((((.((.......(((((......)))))..))..)))).)))))))))))).......................................................................
..................................................................67......................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040039(GSM532924)
G531T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191532(GSM715642)
135genomic small RNA (size selected RNA from . (breast)
......................CACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................2277.000.006.0019.0012.0012.009.0012.00-6.00--1.00-------------------------------------
......................CACTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................2135.000.0013.005.005.006.002.001.00-3.00----------------------------------------
........................CTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................2034.000.009.0011.003.002.002.006.00-1.00----------------------------------------
......................CACTCCAGCCTGAGCAACATAGC.............................................................................................................................................................................................................2331.000.002.001.008.005.003.004.00-8.00----------------------------------------
.......................................................................TATATATGTATATGGACG.................................................................................................................................................................1830.000.00------29.00-----------------------------1.00-----------
......................CACTCCAGCCTGAGCAACAT................................................................................................................................................................................................................2019.000.004.003.003.003.001.001.00-4.00----------------------------------------
........................CTCCAGCCTGAGCAACATAGC.............................................................................................................................................................................................................2116.000.003.002.001.004.002.001.00-3.00----------------------------------------
........................CTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................1910.000.003.00-2.00-2.002.00-1.00----------------------------------------
.....................GCACTCCAGCCTGAGCAACATAGC.............................................................................................................................................................................................................249.000.003.00--1.001.001.00----2.00------------------------1.00------------
.......................ACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................217.000.00---1.001.001.00-1.00--1.00-2.00-----------------------------------
.....................GCACTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................225.000.003.001.001.00---------------------------------------------
.....................GCACTCCAGCCTGAGCAACAT................................................................................................................................................................................................................215.000.002.00-1.00-1.001.00------------------------------------------
........................CTCCAGCCTGAGCAACAT................................................................................................................................................................................................................185.000.001.00---2.00--2.00----------------------------------------
.....................GCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................235.000.001.001.001.00-1.001.00------------------------------------------
....................TGCACTCCAGCCTGAGCAACATAGC.............................................................................................................................................................................................................254.000.00----------3.00----------1.00--------------------------
.......................ACTCCAGCCTGAGCAACAT................................................................................................................................................................................................................194.000.00----3.00--1.00----------------------------------------
..............................................................................................................................................TCAATATGCTGATATTCAGACTGAGA..................................................................................2614.004.00---------------3.00------------1.00-------------------
.......................ACTCCAGCCTGAGCAACATAGC.............................................................................................................................................................................................................223.000.00-2.00-1.00--------------------------------------------
................................................................................................................................................................................................................................CTAGAGGAGACAAGTCGTA.......193.000.00-------------3.00----------------------------------
....................................................................................................................................................................GAGAAGTGATGAATTGATC...................................................................193.000.00-------------------1.00---------1.00----------1.00-------
...............................................................................................................................................................AGACTGAGAAGTGATGGG.........................................................................183.000.00----------------3.00-------------------------------
..................................AGCAACAGCAAGACCCTGTCTCCAC...............................................................................................................................................................................................252.000.00--------2.00---------------------------------------
.................................................................................................................................................................................................................................TAGAGGAGACAAGTAGTA.......182.000.00-----------1.00----------1.00-------------------------
.....................................................................................................................................................................................................................CGATCTGAAGTCTAGAGG...................1812.002.00------------------------2.00-----------------------
.....................................................................................................................................................................................................................................GGAGACAAGTATGGCAAATT.2012.002.00--------------------2.00---------------------------
....................................................................................................................................................................GAGAAGTGATGAATTGAT....................................................................182.000.00-------------1.001.00---------------------------------
......................................................................................................................................................................................................AGGCAATGTCTACTTCGATCTG..............................2212.002.00------------------------------2.00-----------------
.......................ACTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................202.000.00--1.00-1.00-------------------------------------------
.....................................................................................................................................................................AGAAGTGATGAATTCATC...................................................................182.000.00-----------2.00------------------------------------
....................................................................................................................................................................GAGAAGTGATGAATTGAA....................................................................182.000.00--------------1.00----------------1.00----------------
...................CTGCACTCCAGCCTGAGCAACATAGG.............................................................................................................................................................................................................261.000.00--------------------------1.00---------------------
................CCACTGCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................281.000.00-1.00----------------------------------------------
....................TGCACTCCAGCCTGAGCAACATCG..............................................................................................................................................................................................................241.000.00-----------------------------------------------1.00
...................................................................................................................................................................................................................TTCGATCTGAAGTCTAGAGGAGACA..............2511.001.00---------------------------------------------1.00--
.............GTACCACTGCACTCCAGCCTGAGCGACG.................................................................................................................................................................................................................281.000.00--------1.00---------------------------------------
.................................................................................................................................................................................................................................TAGAGGAGACAAGTAGGCG......191.000.00--------------------------------------1.00---------
..................ACTGCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................261.000.00--1.00---------------------------------------------
.................CACTGCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................271.000.00----1.00-------------------------------------------
..........ATTGTACCACTGCACTCCAGCCCGCC......................................................................................................................................................................................................................261.000.00---------1.00--------------------------------------
....................................................................................................................................................................GAGAAGTGATGAATTGATA...................................................................191.000.00-----------------------------1.00------------------
.............................................................................................................................................................................................TTTATAAACAGGCAATAATG.........................................201.000.00------------------1.00-----------------------------
........................CTCCAGCCTGAGCAACATAGT.............................................................................................................................................................................................................211.000.00-1.00----------------------------------------------
...................CTGCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................251.000.00------------1.00-----------------------------------
........................CTCCAGCCTGAGCAACATCGC.............................................................................................................................................................................................................211.000.00-------------------------1.00----------------------
.........................................................................................................................................................................................................................CTGAAGTCTAGAGGAGACAAGTATGGC......2711.001.00-----------------------1.00------------------------
........................................................................................................................................................................................................................TCTGAAGTCTAGAGGAGACAAGTA..........2411.001.00--------------------------------------------1.00---
............................................................................................................................................................TTCAGACTGAGAAGTGAC............................................................................181.000.00-----------------1.00------------------------------
.................CACTGCACTCCAGCCTGAGCAACATCGC.............................................................................................................................................................................................................281.000.00-------------------------1.00----------------------
..............................................................................................................................................................................................TTATAAACAGGCAATAAT..........................................181.000.00------------------1.00-----------------------------
....................TGCACTCCAGCCTGAGCAACATACG.............................................................................................................................................................................................................251.000.00-------------------------------------------1.00----
..........................................................................................................................................................................................................AATGTCTACTTCGATCTGAAGT..........................2211.001.00----------------------------1.00-------------------
...................CTGCACTCCAGCCTGAGCAACATGGG.............................................................................................................................................................................................................261.000.00-------------------------------------1.00----------
........................................................................................................................................................................................................................TCTGAAGTCTAGAGGAGACAAGTAT.........2511.001.00---------------------------1.00--------------------
.....................................................................................................................................................................................................................CGATCTGAAGTCTAGAGGAGA................2111.001.00------------------------------------------1.00-----
....................TGCACTCCAGCCTGAGCAACATAG..............................................................................................................................................................................................................241.000.00----------1.00-------------------------------------
.......................................................................TATATATGTATATGGACGC................................................................................................................................................................191.000.00------1.00-----------------------------------------
...............................................................................................................................................................................................................................TCTAGAGGAGACAAGTCGCA.......201.000.00--------1.00---------------------------------------
.................................................................................................................................................................................................................................TAGAGGAGACAAGTACAAC......191.000.00----------------------1.00-------------------------
.................CACTGCACTCCAGCCTGAGCAACAT................................................................................................................................................................................................................251.000.00-1.00----------------------------------------------
.......................................................................................................................................................................................................................ATCTGAAGTCTAGAGGAGACAAGTATG........2711.001.00---------------------------------1.00--------------
.......................................................................................................................................................TGATATTCAGACTGAGAAGTGA.............................................................................2211.001.00--------------------------------1.00---------------
...................................................................................................................................................................TGAGAAGTGATGAATTG......................................................................171.000.00----------------------------------1.00-------------
.................CACTGCACTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................261.000.001.00-----------------------------------------------
..............................CCTGAGCAACAGCAAGACCCTGGC....................................................................................................................................................................................................241.000.00---------1.00--------------------------------------
................................................................................................................................................................................................................................CTAGAGGAGACAAGTCGT........181.000.00--------------1.00---------------------------------
.......................................................................................................................................................................................................................ATCTGAAGTCTAGAGGAG.................1811.001.00--------------------------1.00---------------------
..............TACCACTGCACTCCAGCCTGAGCGGG..................................................................................................................................................................................................................261.000.00---------1.00--------------------------------------
.....................................................................................................................................................................AGAAGTGATGAATTCATA...................................................................1821.001.00-----------1.00------------------------------------
................CCACTGCACTCCAGCCTGAGCAACATACC.............................................................................................................................................................................................................291.000.00-----------------------1.00------------------------
.........................................................................................................................................................ATATTCAGACTGAGAAGTG..............................................................................1911.001.00---------------------------1.00--------------------
...............................................................................................................................................................AGACTGAGAAGTGATGAATTC......................................................................2111.001.00------------1.00-----------------------------------
...................CTGCACTCCAGCCTGAGCAACATA...............................................................................................................................................................................................................241.000.00--1.00---------------------------------------------
..........................................................................................................................................................................................................AATGTCTACTTCGATCTGAAG...........................2111.001.00---------------------------------------1.00--------
......................CACTCCAGCCTGAGCAACTTT...............................................................................................................................................................................................................211.000.00----------------------------------------------1.00-
..................................................................................................................................................................................................................CTTCGATCTGAAGTCTAGAGGAGACA..............2611.001.00-----------------1.00------------------------------
....................................................................................................................................................................GAGAAGTGATGAATTGAAA...................................................................191.000.00-------------------1.00----------------------------

Antisense strand
GTGAGCTGTGATTGTACCACTGCACTCCAGCCTGAGCAACAGCAAGACCCTGTCTATAAAAATATAAATACTATATATGTATATGGGGCCAAATGCTATGTTCTGTATTTAAATTCTAATTACTTGTTAGATGTTAAGGTTGTCAATATGCTGATATTCAGACTGAGAAGTGATGAATTCATAATTGTCTTTATAAACAGGCAATGTCTACTTCGATCTGAAGTCTAGAGGAGACAAGTATGGCAAATTG
..................................................................(((((.(((((.((((.((....)).)))))))))...)))))..(((((..(((((((.((((.((.......(((((......)))))..))..)))).)))))))))))).......................................................................
..................................................................67......................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040039(GSM532924)
G531T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR040036(GSM532921)
G243N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191532(GSM715642)
135genomic small RNA (size selected RNA from . (breast)
................CCACTGCACTCCAGCCTGAGCAAATC................................................................................................................................................................................................................ 262.000.00--------2.00---------------------------------------
.............................GCCTGAGCAACAGCAGGTC.......................................................................................................................................................................................................... 192.000.00--------2.00---------------------------------------
.................CACTGCACTCCAGCCTGAGCACGC................................................................................................................................................................................................................. 242.000.00---------2.00--------------------------------------
.............................................................................................................................................................TCAGACTGAGAAGTGATGTT......................................................................... 201.000.00-----------------------------------------1.00------
...................................GCAACAGCAAGACCCTGTCTCCCT............................................................................................................................................................................................... 241.000.00--------1.00---------------------------------------
................TCTTGCTGTTGCTCAGGCTGGAGTGCAGTGG........................................................................................................................................................................................................... 3121.001.00---------1.00--------------------------------------
...................CTGCACTCCAGCCTGAGCAAGGCA............................................................................................................................................................................................................... 241.000.00--------1.00---------------------------------------
.....................GCACTCCAGCCTGAGCAACGCC............................................................................................................................................................................................................... 221.000.00--------1.00---------------------------------------
.................CACTGCACTCCAGCCTGAGCGCA.................................................................................................................................................................................................................. 231.000.00--------1.00---------------------------------------
.................CACTGCACTCCAGCCTGAGCAATGGA............................................................................................................................................................................................................... 261.000.00---------1.00--------------------------------------
...................CTGCACTCCAGCCTGAGCAAGGCG............................................................................................................................................................................................................... 241.000.00---------1.00--------------------------------------
..............TACCACTGCACTCCAGCCTGAGCAAACG................................................................................................................................................................................................................ 281.000.00---------1.00--------------------------------------
...............................CTGAGCAACAGCAAGACCCTGTAC................................................................................................................................................................................................... 241.000.00--------1.00---------------------------------------
.................CACTGCACTCCAGCCTGACGCA................................................................................................................................................................................................................... 221.000.00--------1.00---------------------------------------
..............TACCACTGCACTCCAGCG.......................................................................................................................................................................................................................... 181.000.00---------------------1.00--------------------------
.............GTACCACTGCACTCCAGCCTGAGCACCC................................................................................................................................................................................................................. 281.000.00---------1.00--------------------------------------
.............GTACCACTGCACTCCAGCCTTTGC..................................................................................................................................................................................................................... 241.000.00--------1.00---------------------------------------
............TGTACCACTGCACTCCAGCCTCCC...................................................................................................................................................................................................................... 241.000.00---------1.00--------------------------------------
........................CTCCAGCCTGAGCAACAGCACGC........................................................................................................................................................................................................... 231.000.00--------1.00---------------------------------------
.....................GCACTCCAGCCTGAGCAACAGCG.............................................................................................................................................................................................................. 231.000.00---------1.00--------------------------------------
....................................ATAGACAGGGTCTTGCTGTTG................................................................................................................................................................................................. 2121.001.00---------1.00--------------------------------------
..........................AGACAGGGTCTTGCTGTTGCTCAGGCTGG................................................................................................................................................................................................... 2930.670.67---------0.67--------------------------------------
........................AGACAGGGTCTTGCTGTTGCTCAGGCTGGAG................................................................................................................................................................................................... 3130.330.33---------0.33--------------------------------------
........................TCTTGCTGTTGCTCAGGCTGGAG........................................................................................................................................................................................................... 2370.140.14---------0.14--------------------------------------
..........................................................................................................................................................................................................................................AATTTGCCATACTTG. 1590.110.11------0.11-----------------------------------------