ID: uc001voj.1_intron_0_0_chr13_100154032_f.3p
GENE: TM9SF2(1)
chr13:100169668-100169917+


(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(6)
CERVIX 		(4)
HEART 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CATTCCTGGCCTTACTTTGGTATATTTTAAATGTATATAAATCCAGTCAGTGAATGGATTTGTAAGAGAATTGTTTAAAGTTGACTGGAATTATAACATTTTACATTTCAGACATGTCAAATTCTTTTTTAATTCTAAGCATGACTTAAGGCTTTGTGTCCTGTTGTTTATATTCTAATTTTGTGTTTCCTTATTTTCAGGCCGAAATAGAACTATTTGTGAACAGACTTGATTCAGTGGAATCAGTTCT
.................................................................(((...((((((.((((((..((((((...((((.((........)).))))..))))))...)))))).))))))...))).......................................................................................................
..........................................................59......................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040039(GSM532924)
G531T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040041(GSM532926)
G612T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
...............................................................AAGAGAATTGTTTAAATTAG.......................................................................................................................................................................20146.000.00117.0014.007.00---3.00-1.00--1.00-------1.00-1.00---1.00---------------
...............................................................AAGAGAATTGTTTAAATTA........................................................................................................................................................................1976.000.0059.006.006.00-1.00-1.00-1.00-----1.00-------------1.00------------
...............................................................................................................................................................................................................TAGAACTATTTGTGAACAGACTTGATTC...............2813.003.00-------3.00---------------------------------
.............................................................................................................................................................................................................................AACAGACTTGATTCAGTGGA.........2013.003.00-----2.00---------------------1.00-------------
...........................................................................................................................................................................................................GAAATAGAACTATTTGTGAA...........................2012.002.00----2.00------------------------------------
.............................................................................................................................................................................................................................AACAGACTTGATTCAGTGGAAT.......2212.002.00-----------------------------1.00------1.00----
..........................................................................................................................................................................................................CGAAATAGAACTATTTGTGAACAGACT.....................2712.002.00-------------1.00-----------------------1.00---
............................................................................................................................................................................................................AAATAGAACTATTTGTGAACAGACTTGAT.................2912.002.00---2.00-------------------------------------
...........................................................................................................................................................................................................GAAATAGAACTATTTGTGAACAGACT.....................2612.002.00---2.00-------------------------------------
........................................................................................................................................................................................................................TTGTGAACAGACTTGATT................1812.002.00-----------1.00--------------------------1.00--
...........................................................................................................................................................................................................GAAATAGAACTATTTGTGAACAGA.......................2412.002.00----1.00-----1.00------------------------------
............................................................................................................................................................................................................AAATAGAACTATTTGTGAACAGACTT....................2611.001.00---1.00-------------------------------------
..................................................................................................................................................................................................................AACTATTTGTGAACAGACTTGATTCAGTGGAAT.......3311.001.00---------------------------------------1.00-
...........................................................................................................................................................................................................................TGAACAGACTTGATTCAGTGGAATCA.....2611.001.00-----1.00-----------------------------------
............................................................................................................................................................................................................AAATAGAACTATTTGTGAACAGACTTGATT................3011.001.00---1.00-------------------------------------
..............................................................................................................................................................................................................................ACAGACTTGATTCAGTGGA.........1911.001.00--------------------------------1.00--------
........................................................................................................................................................................................................GCCGAAATAGAACTATTTGTGAACA.........................2511.001.00---------------1.00-------------------------
..........................................................................................................................................................................................................CGAAATAGAACTATTTGTGAACAGACTTGAT.................3111.001.00---------1.00-------------------------------
...............................................................AAGAGAATTGTTTAAAGTAGAA.....................................................................................................................................................................221.000.00-----------------------------------1.00-----
.................................................................................................................................................................................................................................GACTTGATTCAGTGGAAT.......1811.001.00----------------------------------1.00------
............................................................................................................................................................................................................AAATAGAACTATTTGTGAACAGACTTG...................2711.001.00-------------------------------1.00---------
...............................................................AAGAGAATTGTTTAAAGTAGA......................................................................................................................................................................211.000.00---------------------------------1.00-------
........................................................................................................................................................................................................................................TTCAGTGGAATCAGTTC.1711.001.00----------1.00------------------------------
........................................................................................................................................................................................................................TTGTGAACAGACTTGATTCAGTGGAAT.......2711.001.00-------1.00---------------------------------
...............................................................AAGAGAATTGTTTAAATTC........................................................................................................................................................................191.000.00-----------------------1.00-----------------
....................................................................................................................................................................................................................................TTGATTCAGTGGAATCAGT...1911.001.00--------------------------1.00--------------
................................................................................................................................................................................................ATTTTCAGGCCGAAATAG........................................1811.001.00----1.00------------------------------------
.............................................................................................................................................................................................................................AACAGACTTGATTCAGTGG..........1911.001.00----1.00------------------------------------
......................................................................................................................AAATTCTTTTTTAATTCTAAGCATG...........................................................................................................2511.001.00---1.00-------------------------------------
...............................................................AAGAGAATTGTTTAAATC.........................................................................................................................................................................181.000.001.00----------------------------------------
.................................................................................................................................................................................................................GAACTATTTGTGAACAGACTTGATT................2511.001.00-----------------1.00-----------------------
........................................................................................................................................................................................................................TTGTGAACAGACTTGAT.................1711.001.00--------------------1.00--------------------
...............................................................AAGAGAATTGTTTAAATCAG.......................................................................................................................................................................201.000.001.00----------------------------------------
...............................................................................................................................................................................................................TAGAACTATTTGTGAACAGACTTGAT.................2611.001.00---------1.00-------------------------------
.............................................................................................................................................................................................................AATAGAACTATTTGTGAACAGACTTGATTCAGT............3311.001.00----------------1.00------------------------
...............................................................AAGAGAATTGTTTAAATCA........................................................................................................................................................................191.000.00--1.00--------------------------------------
.............................................................................................................................................................................................................AATAGAACTATTTGTGAACAG........................2111.001.00------------------------------1.00----------
................................................................................................................................................................................................................................AGACTTGATTCAGTGGAA........1811.001.00------------------1.00----------------------
................................................................................................................................................................................................................AGAACTATTTGTGAACAGACTTGATTC...............2711.001.00----------------------1.00------------------
..............................................................................................................................................................................................................ATAGAACTATTTGTGAACAGACTT....................2411.001.00-----1.00-----------------------------------
..........................................................................................................................................................................................................CGAAATAGAACTATTTGT..............................1820.500.50----------------------------------------0.50

Antisense strand
CATTCCTGGCCTTACTTTGGTATATTTTAAATGTATATAAATCCAGTCAGTGAATGGATTTGTAAGAGAATTGTTTAAAGTTGACTGGAATTATAACATTTTACATTTCAGACATGTCAAATTCTTTTTTAATTCTAAGCATGACTTAAGGCTTTGTGTCCTGTTGTTTATATTCTAATTTTGTGTTTCCTTATTTTCAGGCCGAAATAGAACTATTTGTGAACAGACTTGATTCAGTGGAATCAGTTCT
.................................................................(((...((((((.((((((..((((((...((((.((........)).))))..))))))...)))))).))))))...))).......................................................................................................
..........................................................59......................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040039(GSM532924)
G531T. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040041(GSM532926)
G612T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
...................GTATATTTTAAATGTAG...................................................................................................................................................................................................................... 171.000.00------------1.00----------------------------
......................................................................................................ACATTTCAGACATGTGTC.................................................................................................................................. 181.000.00------------------------1.00----------------
.................................................................................................................................................................................ATTTTGTGTTTCCTTACCTT..................................................... 201.000.00------------1.00----------------------------