ID: uc001viy.3_intron_15_0_chr13_73349514_r.5p
GENE: (5)
chr13:73349863-73350112-


(2)
B-CELL 		(2)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
ACTTGGAAGCTACAGTATGGATTCATGGCGACAATGAAGAAAATAAAGAGGCAAGTATATAAATAAATTCCTTATACACTAAAATAAAGATGATATTTTATATATTATGAACACTTAATGGTAAATACTATTTGTGTAACATATGAGGCTTCACATACTTTAAAGCAAATAGTAACTTTTTTCTTTTTTTTTTTGCAGTGCTCACAATTTGTCAGGTAGTTTTTTAAATCTTTGCGCATGGCATTTCATT
......................................................................................................((((((.........))))))..((((((((((.(((..((((........))))..)))..))))))))))............................................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189785
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGG......................................................2225.000.0020.003.00------------2.00-----------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGC.....................................................2323.000.0019.004.00------------------------------
.......................................................................................................ATTATGAACACTTAAAGT.................................................................................................................................186.000.00--------2.00----2.00---1.00--1.00-----------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCG......................................................225.000.002.00-1.002.00----------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTATG.....................................................234.000.00--2.00-2.00---------------------------
.........CTACAGTATGGATTCATGGCGACA.........................................................................................................................................................................................................................2414.004.00-------4.00------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCTTC...................................................223.000.002.001.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGGC....................................................243.000.002.001.00------------------------------
.......AGCTACAGTATGGATTCATGGCG............................................................................................................................................................................................................................2313.003.00------------2.00--1.00----------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGAG....................................................243.000.001.002.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCTTG....................................................242.000.001.00----1.00--------------------------
.....................................................................................................................................................................................TCTTTTTTTTTTTGCACAGG.................................................202.000.002.00-------------------------------
.........................................................................................................................................................................................TTTTTTTTTGCAGTGCTCCGGA...........................................222.000.00-2.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGCC....................................................242.000.002.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGG.....................................................232.000.002.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGGC......................................................222.000.001.001.00------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTACAG....................................................252.000.00--1.001.00----------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTGAGG....................................................252.000.001.001.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGAGGC...................................................252.000.001.001.00------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAG....................................................2242.002.000.751.25------------------------------
.......................................................................................................ATTATGAACACTTAAAGA.................................................................................................................................182.000.00------2.00-------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCAG....................................................2412.002.00-2.00------------------------------
...........ACAGTATGGATTCATGGCGACAGTG......................................................................................................................................................................................................................252.000.00---------2.00----------------------
.......................................................................................................ATTATGAACACTTAATGT.................................................................................................................................182.000.00--------1.00---------------------1.00-
.........CTACAGTATGGATTCATGGCG............................................................................................................................................................................................................................2112.002.00-----------2.00--------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTACT.....................................................232.000.00--1.00-1.00---------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCG........................................................202.000.00--1.00-1.00---------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCTTC...................................................232.000.002.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGGG....................................................242.000.002.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGAG......................................................222.000.002.00-------------------------------
....................................................................................................................................................................................TTCTTTTTTTTTTTGCAGTTGC................................................222.000.001.001.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCCGG....................................................241.000.001.00-------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCTGTG..................................................231.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCAGG...................................................2511.002.001.00-------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCCTGG..................................................241.000.00-----1.00--------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTCTGG......................................................231.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCTGG......................................................221.000.001.00-------------------------------
...............................................................................................................................................................................................TTTGCAGTGCTCACACAGA........................................191.000.00-----------------------------1.00--
.............................................................................................................................................................................AACTTTTTTCTTTTTTTACAG........................................................211.000.00---1.00----------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCAGAGTC................................................241.000.00-1.00------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTCTTG....................................................251.000.00-----1.00--------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCAGG...................................................211.000.001.00-------------------------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCAGTGTGG...............................................241.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTAATG....................................................241.000.00---1.00----------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGT.....................................................231.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTACTG........................................................201.000.00---1.00----------------------------
....................................................................................................................................................................................TTCTTTTTTTTTTTGCAGTTG.................................................211.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGAGG....................................................241.000.001.00-------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTACTA....................................................251.000.00----1.00---------------------------
.............AGTATGGATTCATGGCCA...........................................................................................................................................................................................................................181.000.00----------1.00---------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCTGCG..................................................221.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGTT....................................................241.000.001.00-------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCTTAG..................................................241.000.00-1.00------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTCTGT....................................................251.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCATG......................................................221.000.00---1.00----------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTACTG....................................................241.000.00----1.00---------------------------
............................................................................................................................................................................TAACTTTTTTCTTTTTTTTTTTAAG.....................................................251.000.00--1.00-----------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCAGG......................................................221.000.001.00-------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTGATAG...................................................261.000.001.00-------------------------------
...............................................................................................................................................................................CTTTTTTCTTTTTTTTTTTGCAGGCTG................................................271.000.001.00-------------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCAGGAG.................................................231.000.00-1.00------------------------------
.......................................................................................................ATTATGAACACTTAAAGTT................................................................................................................................191.000.00------1.00-------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCAGTGC.................................................2711.001.001.00-------------------------------
.......AGCTACAGTATGGATTCATTGCG............................................................................................................................................................................................................................231.000.00---------------1.00----------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGG.......................................................211.000.001.00-------------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCAGACT.................................................231.000.001.00-------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCGCG...................................................221.000.001.00-------------------------------
.....................................................................................................................................................................................TCTTTTTTTTTTTGCAGCC..................................................191.000.001.00-------------------------------
................ATGGATTCATGGCGACA.........................................................................................................................................................................................................................1711.001.00---------------------------1.00----
.......................................................................................................ATTATGAACACTTAAAAAT................................................................................................................................191.000.00------1.00-------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGG.....................................................231.000.001.00-------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTGG......................................................231.000.001.00-------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCTGTC..................................................231.000.00-1.00------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCACAG..................................................231.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTCCAG......................................................221.000.001.00-------------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCAGGGTG................................................241.000.00-1.00------------------------------
.....................................................................................................................................................................................TCTTTTTTTTTTTGCAGGGC.................................................201.000.001.00-------------------------------
....................................................................................................................................................................................TTCTTTTTTTTTTTGCAGGTG.................................................211.000.001.00-------------------------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCAGTGTGGA..............................................251.000.00-1.00------------------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTTGCATCAT.................................................231.000.00-----1.00--------------------------
......................................GAAAATAAAGAGGCAACGGC................................................................................................................................................................................................201.000.00----------------------1.00---------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCTGGT..................................................241.000.00-1.00------------------------------
.............................................................................................................................................................................AACTTTTTTCTTTTTTTTTTTGATTC...................................................261.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGCA....................................................241.000.001.00-------------------------------
..................................................................ATTCCTTATACACTACAG......................................................................................................................................................................181.000.00--1.00-----------------------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCGCG...................................................201.000.001.00-------------------------------
............................................................................................................................................................................TAACTTTTTTCTTTTTTTTTAAG.......................................................231.000.00--1.00-----------------------------
............................................................................................................................................................................TAACTTTTTTCTTTTTTTTTTTTCTG....................................................261.000.00----1.00---------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGGC....................................................241.000.001.00-------------------------------
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCACGTG.................................................221.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGAG....................................................241.000.001.00-------------------------------
.............AGTATGGATTCATGGACC...........................................................................................................................................................................................................................181.000.00---------------------1.00----------
................ATGGATTCATGGCGACAATGAAG...................................................................................................................................................................................................................2311.001.00--------------------------1.00-----
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCAGTGGTTT..............................................251.000.001.00-------------------------------
....................................................................................................................................................................................TTCTTTTTTTTTTTGCGAGC..................................................201.000.001.00-------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCGAG...................................................221.000.001.00-------------------------------
............................................................................................................................................................................TAACTTTTTTCTTTTTTTTTTAAT......................................................241.000.00--1.00-----------------------------
...............................................................................................................................................................................................TTTGCAGTGCTCACACAA.........................................181.000.00-------------------1.00------------
...............................................................................................................................................................................................TTTGCAGTGCTCACACA..........................................171.000.00-------------------------1.00------
...........ACAGTATGGATTCATGGCGACAT........................................................................................................................................................................................................................231.000.00----------------------------1.00---
...................................................................................................................................................................................TTTCTTTTTTTTTTTGCAGGAG.................................................221.000.00-1.00------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCAGTTGC................................................251.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCAAG....................................................241.000.001.00-------------------------------
......................................................................................................................................................................................CTTTTTTTTTTTGCAGGGTT................................................201.000.001.00-------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCTTCC..................................................241.000.00-1.00------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGGCG...................................................251.000.001.00-------------------------------
......AAGCTACAGTATGGATTCATG...............................................................................................................................................................................................................................2111.001.00----------1.00---------------------
.......AGCTACAGTATGGATTCATGGCGACAATG......................................................................................................................................................................................................................2911.001.00----------------1.00---------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGA.....................................................231.000.00------------------------1.00-------
..........TACAGTATGGATTCATGGCGACAATG......................................................................................................................................................................................................................2611.001.00-----------------------1.00--------
....................................................................................................................................................................................TTCTTTTTTTTTTTGCACAGG.................................................211.000.001.00-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGGCTC...................................................251.000.00-1.00------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCAG....................................................2180.620.620.380.25------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAGT...................................................2320.500.500.50-------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAGG...................................................2340.252.00-0.25------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAGGGGC................................................2640.252.00-0.25------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCGGC...................................................2540.250.250.25-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCTC....................................................2440.250.250.25-------------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAGGG..................................................2440.252.00-----0.25--------------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTTGCAGCTG.................................................2540.252.000.25-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGC......................................................2240.250.250.25-------------------------------
..............................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTGCC.....................................................2340.250.250.25-------------------------------
.....................................................................................................................................................................................TCTTTTTTTTTTTGCAGT...................................................1890.220.220.22-------------------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTTGCAGCTGT................................................2580.120.620.12-------------------------------

Antisense strand
ACTTGGAAGCTACAGTATGGATTCATGGCGACAATGAAGAAAATAAAGAGGCAAGTATATAAATAAATTCCTTATACACTAAAATAAAGATGATATTTTATATATTATGAACACTTAATGGTAAATACTATTTGTGTAACATATGAGGCTTCACATACTTTAAAGCAAATAGTAACTTTTTTCTTTTTTTTTTTGCAGTGCTCACAATTTGTCAGGTAGTTTTTTAAATCTTTGCGCATGGCATTTCATT
......................................................................................................((((((.........))))))..((((((((((.(((..((((........))))..)))..))))))))))............................................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189785
.....................................................................................................................................................................................TCTTTTTTTTTTTGCATAGA................................................. 201.000.00------------------1.00-------------
............................................................................................................TACCATTAAGTGTTC............................................................................................................................... 1570.140.14-------------------------------0.14