ID: uc001vih.1_intron_3_0_chr13_64413958_r.3p
GENE: AK098560(2)
chr13:64413908-64414157-


(3)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(4)
CERVIX
(1)
LIVER
(2)
OTHER
(16)
SKIN
(1)
TESTES

Sense strand
TCCAAAGGTTCCCGGTCCCCGCCCCCTTTGTGACCTCATACAAAGGCTTGGCTTATACTGCAAAGTTTGGGATCCACAGTCTACAAAACCCCACAGCTCCTGAGAATTCTCTCGCCTGCTTTCGACCCTTAGGCTCTGGTAGATTGCAAATAACCTGCTTTCTTTCTGTTCCCGGGCGGCGTGGGACCCCTGTCGGATAGTCAATCCCAATTAAGGTACCCGCCGTCGGCAGATTTGAGCTTTCTTCTTG
.................................................................((((((((.....)))).))))..(((((.(((((((.((((......(((((...........)))))...((.(((..(((.......)))..))).)).)))).)))).)))))))).................................................................
..............................................................63.............................................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
.......................................................................................................................................................................GTTCCCGGGCGGCGTACCA................................................................19231.000.5010.00--4.004.00-3.003.001.00-3.00---2.00-------1.00-------------
...................................................................................................................................................................TTCTGTTCCCGGGCGG.......................................................................1627.507.50-4.00---3.50------------------------------
........................................................................................................................................................................TTCCCGGGCGGCGTGCTA................................................................183.000.00----1.00--1.00----------1.00-----------------
.......................................................................................................................................................................GTTCCCGGGCGGCGTACCC................................................................1923.000.50--------3.00---------------------------
..........CCCGGTCCCCGCCCCCGG..............................................................................................................................................................................................................................182.000.00--------------------1.00------1.00--------
........................................................................................................................................................................TTCCCGGGCGGCGTGCCAT...............................................................192.000.00-----------2.00------------------------
........................................................................................................................................................................TTCCCGGGCGGCGTGCCT................................................................182.000.00-------------------------1.00--1.00-------
........................................................................................................................................................................TTCCCGGGCGGCGTGCCTT...............................................................191.000.00-----------1.00------------------------
...................................................................TGGGATCCACAGTCTACGGTC..................................................................................................................................................................211.000.00------------1.00-----------------------
.......................................................................................................................................................................GTTCCCGGGCGGCGTACTA................................................................1921.000.50------1.00-----------------------------
.......................................................................................................................................................................GTTCCCGGGCGGCGTACC.................................................................1821.000.50-----------------------1.00------------
...................................................................................................................................................................TTCTGTTCCCGGGCGGC......................................................................1721.001.00-----1.00------------------------------
....................................................................................................................................................................TCTGTTCCCGGGCGGCG.....................................................................1711.001.00---------------1.00--------------------
........................................................................................................................................TGGTAGATTGCAAATAGTT...............................................................................................191.000.00-------------------1.00----------------
........................................................................................................................................................................TTCCCGGGCGGCGTGCCA................................................................181.000.00---1.00--------------------------------
..........CCCGGTCCCCGCCCCCTGA.............................................................................................................................................................................................................................191.000.00----------------1.00-------------------
............................................................CAAAGTTTGGGATCCTTGA...........................................................................................................................................................................191.000.00---------------------1.00--------------
............................................................CAAAGTTTGGGATCCTTG............................................................................................................................................................................181.000.00------------1.00-----------------------
.......................................................................................................................................................................GTTCCCGGGCGGCGT....................................................................1520.500.50----------------------------------0.50-
....................................................................................................................................................................TCTGTTCCCGGGCGG.......................................................................1530.330.33-0.33----------------------------------

Antisense strand
TCCAAAGGTTCCCGGTCCCCGCCCCCTTTGTGACCTCATACAAAGGCTTGGCTTATACTGCAAAGTTTGGGATCCACAGTCTACAAAACCCCACAGCTCCTGAGAATTCTCTCGCCTGCTTTCGACCCTTAGGCTCTGGTAGATTGCAAATAACCTGCTTTCTTTCTGTTCCCGGGCGGCGTGGGACCCCTGTCGGATAGTCAATCCCAATTAAGGTACCCGCCGTCGGCAGATTTGAGCTTTCTTCTTG
.................................................................((((((((.....)))).))))..(((((.(((((((.((((......(((((...........)))))...((.(((..(((.......)))..))).)).)))).)))).)))))))).................................................................
..............................................................63.............................................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
.........................................AAAGGCTTGGCTTATCCT............................................................................................................................................................................................... 184.000.00--4.00---------------------------------
.........................................AAAGGCTTGGCTTATCTC............................................................................................................................................................................................... 182.000.00--2.00---------------------------------
.............................................................................AGTCTACAAAACCCCACAGCTCCTGCTG................................................................................................................................................. 282.000.00-------------2.00----------------------
.....................................................................................................................................................ATAACCTGCTTTCTTTGC................................................................................... 181.000.00-------------------------------1.00----
....................................................................GGGATCCACAGTCTACAAAACCCCACATG......................................................................................................................................................... 291.000.00-1.00----------------------------------
.....................................................................................AAACCCCACAGCTCCTCC................................................................................................................................................... 181.000.00------------------------1.00-----------
..........CCCGGTCCCCGCCCCCTG.............................................................................................................................................................................................................................. 181.000.00--------------------------1.00---------
....................................................................GGGATCCACAGTCTACATG................................................................................................................................................................... 191.000.00-----------------------------1.00------
...........CCGGTCCCCGCCCCCTA.............................................................................................................................................................................................................................. 171.000.00--------------------------------1.00---
...........CCGGTCCCCGCCCCCTTCG............................................................................................................................................................................................................................ 191.000.00---------1.00--------------------------
...........CCGGTCCCCGCCCCCTACG............................................................................................................................................................................................................................ 191.000.00---------1.00--------------------------
....................................................................................................................TGCTTTCGACCCTTAGAAG................................................................................................................... 191.000.00-----------------1.00------------------
......................................................................GATCCACAGTCTACAAAACCCCATCTG......................................................................................................................................................... 271.000.00-1.00----------------------------------
...............................................................................................................................................................TTCTTTCTGTTCCCGCAGC........................................................................ 191.000.00------------------------------1.00-----
...........CCGGTCCCCGCCCCCTCGG............................................................................................................................................................................................................................ 191.000.00---------1.00--------------------------
.....................................................................................................................CCTAAGGGTCGAAAGC..................................................................................................................... 1620.500.50---------------------------------0.50--
..........................................................................................................................................................................CCCACGCCGCCCGGG................................................................. 1540.250.25---------------0.25--------------------
.......................................................................................AGAGAATTCTCAGGAGCTGTGGGGT.......................................................................................................................................... 2560.170.17-----------------------------------0.17