ID: uc001vbs.2_intron_9_0_chr13_48571159_r.5p
GENE: (1)
chr13:48575116-48575365-


(1)
B-CELL 		(2)
BRAIN 		(19)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(6)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCACCCTTCGGAACCACCGGCCTCGGACGGCCCAGCGGGCTGCTGCTCAGGTAATGCCTTCCAGTCCGCTGTCGTCTCGAGGGTCGGCAGGAGAAAGGGTGAGGTGTGAGGGGTCCCGTGGCCCGGCTCGGGGTCACTTCGCCGGCAGTGACATTTTTCTGGGTGCCCTGCAAGGCCCTCGGGCGACTTGCCTGGGAGTGCTGCTCGCCAGGACTACGAGCGAGCCCATGTTTGCGCGGCTCTGACCCAG
....................................................................((((((.((....)).)))))).......((((((((((((((((((....)))))..))))....)))))))))...........................................................................................................
...................................................................68........................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................................CGTCTCGAGGGTCGGGGG................................................................................................................................................................18122.0015.003.009.002.001.00-2.00--------2.00--------------1.001.00-------1.00-------------
........................................................................CGTCTCGAGGGTCGG...................................................................................................................................................................15115.0015.001.00-2.002.00---1.00-2.00-1.00-------1.00----1.001.00------------------1.00---1.00-1.00-
........................................................................CGTCTCGAGGGTCGGGGGC...............................................................................................................................................................19114.0015.004.00----1.002.00------1.00-------1.00-----1.001.00--1.00----1.00------------1.00--
........................................................................CGTCTCGAGGGTCGGGG.................................................................................................................................................................17111.0015.002.003.002.001.001.00--1.00--------------1.00-----------------------------
........................................................................CGTCTCGAGGGTCGGG..................................................................................................................................................................1619.0015.003.002.002.001.00---1.00--------------------------------------------
......TTCGGAACCACCGGCCTCGG................................................................................................................................................................................................................................2012.002.00----------2.00-----------------------------------------
.....CTTCGGAACCACCGGCCTCGGACGGCCCAGCGG....................................................................................................................................................................................................................3312.002.00---------------2.00------------------------------------
.....CTTCGGAACCACCGGCCTCGGACGGCCCAGC......................................................................................................................................................................................................................3111.001.001.00---------------------------------------------------
.....CTTCGGAACCACCGGCCTCGGACGG............................................................................................................................................................................................................................2511.001.00-----------------1.00----------------------------------
......TTCGGAACCACCGGCCTCGGACGGCC..........................................................................................................................................................................................................................2611.001.00------1.00---------------------------------------------
.............................GCCCAGCGGGCTGCTGCTCAGG.......................................................................................................................................................................................................2211.001.00-----------------------------------------------1.00----
.........................................................................................................................................TTCGCCGGCAGTGACAT................................................................................................1711.001.00----1.00-----------------------------------------------
........................................................................CGTCTCGAGGGTCGGA..................................................................................................................................................................1611.0015.00----1.00-----------------------------------------------
...CCCTTCGGAACCACCGGCCTCGG................................................................................................................................................................................................................................2311.001.00------------------1.00---------------------------------
..ACCCTTCGGAACCACCGGCCTCGGACGGC...........................................................................................................................................................................................................................2911.001.00--------------------------------1.00-------------------
........................................................................CGTCTCGAGGGTCGGAA.................................................................................................................................................................1711.0015.00-----------1.00----------------------------------------
..ACCCTTCGGAACCACCGGC.....................................................................................................................................................................................................................................1911.001.00----------------------------------------1.00-----------
.......TCGGAACCACCGGCCTCGGACGGCC..........................................................................................................................................................................................................................2511.001.00----------------1.00-----------------------------------
...CCCTTCGGAACCACCGGCCTCGGACGGCC..........................................................................................................................................................................................................................2911.001.00---------------------------------------1.00------------
........................................................................CGTCTCGAGGGTCGGGAT................................................................................................................................................................1811.0015.00---1.00------------------------------------------------
.....CTTCGGAACCACCGGCCTCGGACGGC...........................................................................................................................................................................................................................2611.001.00----------------1.00-----------------------------------
...........................................................................................................................................................................................................CTCGCCAGGACTACGAG..............................1711.001.00----1.00-----------------------------------------------
......................................................................................GCAGGAGAAAGGGTGAGC..................................................................................................................................................181.000.00-----------------1.00----------------------------------
.........GGAACCACCGGCCTCGG................................................................................................................................................................................................................................1711.001.00--------1.00-------------------------------------------
.............................GCCCAGCGGGCTGCTGCTC..........................................................................................................................................................................................................1911.001.00-----------------------1.00----------------------------
..........................................................................TCTCGAGGGTCGGCAGTTCA............................................................................................................................................................201.000.00-------------1.00--------------------------------------
........CGGAACCACCGGCCTCGGACGGCC..........................................................................................................................................................................................................................2411.001.00------------------------------------------1.00---------
.......TCGGAACCACCGGCCTCGGAC..............................................................................................................................................................................................................................2111.001.00-----------------------------------------1.00----------
........CGGAACCACCGGCCTCGGACGGCCCAGC......................................................................................................................................................................................................................2811.001.00--------1.00-------------------------------------------
..............CACCGGCCTCGGACGGCCCAGC......................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00------
.................CGGCCTCGGACGGCCCAGCGGGCTG................................................................................................................................................................................................................2511.001.00----------------------------------1.00-----------------
..ACCCTTCGGAACCACGA.......................................................................................................................................................................................................................................171.000.00--------------------------1.00-------------------------
..........................................................................................................TGAGGGGTCCCGTGGCCCGGCTCGGGGCC...................................................................................................................291.000.00---------------------------------1.00------------------
.................................................................................................................................................................................................................AGGACTACGAGCGAGC.........................1620.500.50---------------------------------------------------0.50

Antisense strand
CCACCCTTCGGAACCACCGGCCTCGGACGGCCCAGCGGGCTGCTGCTCAGGTAATGCCTTCCAGTCCGCTGTCGTCTCGAGGGTCGGCAGGAGAAAGGGTGAGGTGTGAGGGGTCCCGTGGCCCGGCTCGGGGTCACTTCGCCGGCAGTGACATTTTTCTGGGTGCCCTGCAAGGCCCTCGGGCGACTTGCCTGGGAGTGCTGCTCGCCAGGACTACGAGCGAGCCCATGTTTGCGCGGCTCTGACCCAG
....................................................................((((((.((....)).)))))).......((((((((((((((((((....)))))..))))....)))))))))...........................................................................................................
...................................................................68........................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................................................................................................................GACTACGAGCGAGCCCATGTTTGGC.............. 252.000.00------------2.00---------------------------------------
..............................CCCAGCGGGCTGCTGCTGCC........................................................................................................................................................................................................ 201.000.00-----------------------------------1.00----------------
....................................................................CTGTCGTCTCGAGGGTTGC................................................................................................................................................................... 191.000.00----------------------------------------------1.00-----
..................................................................ACCCTCGAGACGACAGCG...................................................................................................................................................................... 1821.001.00-------------------------------------1.00--------------
................CCGGCCTCGGACGGCCCCGG...................................................................................................................................................................................................................... 201.000.00--------------------1.00-------------------------------
.................................................................................................................................................................................................TCCTGGCGAGCAGCACTCCC..................................... 2011.001.00-------------------------------------------1.00--------