ID: uc001uyt.2_intron_0_0_chr13_43137100_f.5p
GENE: TNFSF11(1)
chr13:43137050-43137299+


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(17)
BREAST
(14)
CELL-LINE
(12)
CERVIX
(2)
HEART
(2)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGAAGGTTTCCAGCCAGAGGCAAGCTGTAGCCAGAAGAAAAGAATGAGAGGTACTATTAGTTGCAGAAATTGAGGGGAGAACTGTAAACAGTCAGCTAGGGAGAGGGAGTTTCAGTCAGATGTTTCCAGTGGGAAAATCTTTAAGAAAATACAAAAGAGTACCATGAATGAAAGAGTTCACTCTGAACATTTTACCAAGCTCAGAGAGCACCAACCCAGGTTATAACTTTACTAGTCAAATAAGTCCCCT
..........................................................................................................((((((..((.((((((((..((((((....(((((.......(((......))).........))))).))))))..)))))))).)).))))))................................................
........................................................................................................105..................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR040035(GSM532920)
G001T. (cervix)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040018(GSM532903)
G701N. (cervix)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR040041(GSM532926)
G612T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
.............................................................................................................TTTCAGTCAGATGTTTACAG.........................................................................................................................2076.000.0073.00----1.00--------------------------1.00-------1.00----------------------------
.............................................................................................................TTTCAGTCAGATGTTTGCAG.........................................................................................................................2029.000.00--------2.00-3.00-2.001.002.00-1.00-1.00--------------1.00----1.001.00-1.00-----1.001.001.001.001.001.00---1.001.00---1.001.00-1.001.00--1.00
.............................................................................................................TTTCAGTCAGATGTTTACA..........................................................................................................................1923.000.0023.00--------------------------------------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTGCT..........................................................................................................................2014.000.00-6.001.005.002.00----------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGCTT.........................................................................................................................207.000.00-------------------1.00--1.00--1.00---------1.00-1.00------1.00----------1.00-------------
............................................................................................................GTTTCAGTCAGATGTTTACA..........................................................................................................................206.000.00--3.00--------3.00---------------------------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTGCTG.........................................................................................................................216.000.00--1.001.001.00-1.00-------------1.00-----1.00------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGCAA.........................................................................................................................205.000.00-------------1.00--1.001.00------1.00-----------1.00--------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGCTA.........................................................................................................................204.000.00-------------------1.00-------1.00--------------1.00-----------1.00--------------
............................................................................................................GTTTCAGTCAGATGTTTGCAG.........................................................................................................................214.000.00------4.00--------------------------------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTACAG.........................................................................................................................213.000.00--1.00-2.00----------------------------------------------------------------
..............................................................................................................TTCAGTCAGATGTTTGCTA.........................................................................................................................193.000.00---------------2.00--------------------------------------------1.00--------
..............................................................................................................TTCAGTCAGATGTTTGCAG.........................................................................................................................193.000.00------------------1.00-1.00----------------------1.00-------------------------
.............................................................................................................TTTCAGTCAGATGTTCG............................................................................................................................172.000.00-----2.00---------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGA...........................................................................................................................182.000.00------------------------------1.00----------------------------1.00---------
.............................................................................................................TTTCAGTCAGATGTTTCTGCT........................................................................................................................212.000.00---------2.00-----------------------------------------------------------
.......................................................................................................................................................................................TGAACATTTTACCAAGGCC................................................192.000.00--------2.00------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTCCTGC........................................................................................................................212.000.00-----------------------1.00---------------------------------------1.00-----
.............................................................................................................TTTCAGTCAGATGTTTGTTG.........................................................................................................................201.000.00-----------------------------------------------------1.00---------------
.............................................................................................................TTTCAGTCAGATGTTTACAA.........................................................................................................................201.000.00-----------------1.00---------------------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTG............................................................................................................................181.000.00-------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................................CTTTACTAGTCAAATAAGTC....2011.001.00------------------------------------------------------------------1.00--
..............................................................................................................TTCAGTCAGATGTTTGGT..........................................................................................................................181.000.00-------------------------------------------------------------------1.00-
............................................................................................................GTTTCAGTCAGATGTTTGCTA.........................................................................................................................211.000.00----1.00----------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGGT..........................................................................................................................191.000.00----------------------------------------------------------1.00----------
............................................................................................................GTTTCAGTCAGATGTTTACAA.........................................................................................................................211.000.00------1.00--------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGAAA.........................................................................................................................201.000.00-----------------------------1.00---------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTGC...........................................................................................................................191.000.00--1.00------------------------------------------------------------------
..............................................................................................................TTCAGTCAGATGTTTACAG.........................................................................................................................191.000.00-----1.00---------------------------------------------------------------
...................GCAAGCTGTAGCCAGAATAG...................................................................................................................................................................................................................201.000.00-------1.00-------------------------------------------------------------
..............................................................................................................TTCAGTCAGATGTTTCCTCC........................................................................................................................201.000.00---------------------------------------------1.00-----------------------
.............................................................................................................TTTCAGTCAGATGTTTAGTG.........................................................................................................................201.000.00----------------------------1.00----------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTCGA..........................................................................................................................191.000.00-----1.00---------------------------------------------------------------
............................................................................................................GTTTCAGTCAGATGTTTGTT..........................................................................................................................201.000.00-1.00-------------------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTGCGC.........................................................................................................................201.000.00---------1.00-----------------------------------------------------------
.............................................................................................................TTTCAGTCAGATGTTTACTG.........................................................................................................................201.000.00------------1.00--------------------------------------------------------

Antisense strand
AGAAGGTTTCCAGCCAGAGGCAAGCTGTAGCCAGAAGAAAAGAATGAGAGGTACTATTAGTTGCAGAAATTGAGGGGAGAACTGTAAACAGTCAGCTAGGGAGAGGGAGTTTCAGTCAGATGTTTCCAGTGGGAAAATCTTTAAGAAAATACAAAAGAGTACCATGAATGAAAGAGTTCACTCTGAACATTTTACCAAGCTCAGAGAGCACCAACCCAGGTTATAACTTTACTAGTCAAATAAGTCCCCT
..........................................................................................................((((((..((.((((((((..((((((....(((((.......(((......))).........))))).))))))..)))))))).)).))))))................................................
........................................................................................................105..................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR040035(GSM532920)
G001T. (cervix)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR040029(GSM532914)
G026T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040018(GSM532903)
G701N. (cervix)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR040041(GSM532926)
G612T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
................................................................................................................CAGTCAGATGTTTCCAGAAG...................................................................................................................... 202.000.00-------2.00-------------------------------------------------------------
................................AGAAGAAAAGAATGACAAG....................................................................................................................................................................................................... 191.000.00---------------------1.00-----------------------------------------------
................................................................................................................CAGTCAGATGTTTCCAGAAT...................................................................................................................... 201.000.00----------------------------------------------1.00----------------------
......................................................................TGAGGGGAGAACTGTACG.................................................................................................................................................................. 181.000.00-------1.00-------------------------------------------------------------
...................................................................................................................TCAGATGTTTCCAGTAGGA.................................................................................................................... 191.000.00----------------------------------1.00----------------------------------
................................................................................................................CAGTCAGATGTTTCCGAAG....................................................................................................................... 191.000.00-----1.00---------------------------------------------------------------