ID: uc001uuw.2_intron_12_0_chr13_33741760_r.5p
GENE: (1)
chr13:33859407-33859656-


(1)
AGO2.ip 		(1)
BRAIN 		(5)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
GATGAGCCGGATTCTAGCACGCCATCAGCTAGTGACTAAAATTCAACAAGGTGAGTGGCCGGCAGTGGAAGGCTGTTGCTCATTCTGATTTCTGTTGGCTCTATTTCATGCTAACCCAGTTTTTTTTGTTTGTTTGTTTCCACTTTATAACATATGGATTTCTATGCCACACTACCCGTAACTTTGAAAAATAACTTTAGGCTGCAGTTTTCAGCAAACAGGACAGTCCTTAGCTGCCACATAGCTCAAC
....................................................((((((..(((((.(((((((((....((.....)).....((((((..........)))))).)))))))))....))))).....)))))).........................................................................................................
..................................................51.............................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR189784SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCCTC...........................................................................................................2618.001.004.004.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCCC............................................................................................................2517.001.007.00--------------------------------
.....................................................................................................................................TTGTTTCCACTTTATATC...................................................................................................184.000.00--4.00------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCCT............................................................................................................2513.001.002.001.00-------------------------------
..............................................................CAGTGGAAGGCTGTTGCT..........................................................................................................................................................................1813.003.00---3.00-----------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCTTG...........................................................................................................263.000.003.00--------------------------------
........................................................................................................................................................................................................................AACAGGACAGTCCTTAGCTGC.............2112.002.00----2.00----------------------------
....................................................................................................CTATTTCATGCTAACCCAGTTTTT..............................................................................................................................2412.002.00-------2.00-------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCTCT............................................................................................................252.000.00-2.00-------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................232.000.001.001.00-------------------------------
........................................................................................................................................................................................................................AACAGGACAGTCCTTAGCTGCCACAGCTC.....292.000.002.00--------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCGGC...........................................................................................................222.000.002.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTCTCC.............................................................................................................242.000.001.001.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCCC.............................................................................................................242.000.001.001.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCTTC...........................................................................................................262.000.001.001.00-------------------------------
................................................................................CATTCTGATTTCTGTTGG........................................................................................................................................................1812.002.00--------2.00------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCCCT............................................................................................................252.000.002.00--------------------------------
...........................................................CGGCAGTGGAAGGCTGTTG............................................................................................................................................................................1911.001.00----------------------1.00----------
...........................................................................................CTGTTGGCTCTATTTCATGCT..........................................................................................................................................2111.001.00---------1.00-----------------------
..................................................................................................................CCCAGTTTTTTTTGTTTGTTTGTTTCCT............................................................................................................2811.001.00-1.00-------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTCGG.............................................................................................................221.000.001.00--------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTTCACTG..........................................................................................................251.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTCTAC................................................................................................................211.000.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCGTT...........................................................................................................261.000.001.00--------------------------------
......................................................................................................................GTTTTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................261.000.00-1.00-------------------------------
........................................ATTCAACAAGGTGAGTGGC...............................................................................................................................................................................................1911.001.00------------------1.00--------------
........................................................................................................................TTTTTTTGTTTGTTTGTTTCGGGA..........................................................................................................241.000.00-1.00-------------------------------
..................................................................................................................CCCAGTTTTTTTTGTTTGTTTGTTTCC.............................................................................................................2711.001.001.00--------------------------------
....................................................................................................................CAGTTTTTTTTGTTTGTTTGTTTCC.............................................................................................................2511.001.001.00--------------------------------
...................................................................................................................CCAGTTTTTTTTGTTTGTTTGTTTCC.............................................................................................................2611.001.001.00--------------------------------
.....GCCGGATTCTAGCACGC....................................................................................................................................................................................................................................1711.001.00------------1.00--------------------
......................................................................................................................GTTTTTTTTGTTTGTTGGC.................................................................................................................191.000.00---------------1.00-----------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTAAGC...........................................................................................................261.000.00-1.00-------------------------------
.................................................................................................................ACCCAGTTTTTTTTGTTTGTTTGTTTC..............................................................................................................2711.001.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCTGC............................................................................................................251.000.00-1.00-------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................251.000.00-1.00-------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTTCGGT...........................................................................................................241.000.00-1.00-------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTCTAC............................................................................................................231.000.001.00--------------------------------
........................................................................................................................TTTTTTTGTTTGTTTGTTTCCGCTC.........................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCC..............................................................................................................231.000.00-1.00-------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCCGGCC.........................................................................................................241.000.00-1.00-------------------------------
.............................................................GCAGTGGAAGGCTGTTGG...........................................................................................................................................................................181.000.00-------------------------1.00-------
..........................................................................................................................TTTTTGTTTGTTTGTTTCCAGGGT........................................................................................................241.000.00-1.00-------------------------------
.........................................................................................................................................TTCCACTTTATAACATAATG.............................................................................................201.000.00------1.00--------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTTCCGG...........................................................................................................241.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCGAA...........................................................................................................261.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGGCA...................................................................................................................181.000.00-------------------1.00-------------
.....................................................................................................................AGTTTTTTTTGTTTGTTCTG.................................................................................................................201.000.00-1.00-------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCCAATC.........................................................................................................241.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTCTGC...............................................................................................................221.000.00-1.00-------------------------------
........................................................................................................................TTTTTTTGTTTGTTTGTTTCCATCTC........................................................................................................261.000.00-1.00-------------------------------
..................................................GTGAGTGGCCGGCAGTGGA.....................................................................................................................................................................................1911.001.00-----------1.00---------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCACT...........................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCC.............................................................................................................2411.001.001.00--------------------------------
......................................................................................................................GTTTTTTTTGTTTGTTTGTTTCCCCTG.........................................................................................................271.000.001.00--------------------------------
...........................................CAACAAGGTGAGTGGCCGGC...........................................................................................................................................................................................2011.001.00------------------------------1.00--
.....................................................................................................TATTTCATGCTAACCCAGTT.................................................................................................................................2011.001.00-----------------------1.00---------
.............................................ACAAGGTGAGTGGCCGGGG..........................................................................................................................................................................................191.000.00--------------1.00------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCCCT...........................................................................................................2611.001.00-1.00-------------------------------
.............................................................................................GTTGGCTCTATTTCATGC...........................................................................................................................................1811.001.00-------------1.00-------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCCACTTT........................................................................................................2911.001.001.00--------------------------------
.......................................................................................................................TTTTTTTTGTTTGTTTGTTTCGCC...........................................................................................................241.000.00-1.00-------------------------------
..............................................................................................................................TGTTTGTTTGTTTCCACGTG........................................................................................................201.000.001.00--------------------------------
.................................................................................................................ACCCAGTTTTTTTTGTTTGTTTGCTTC..............................................................................................................271.000.001.00--------------------------------
......................................................................................................................................................................................................AGGCTGCAGTTTTCAGGAAA................................201.000.00--------------------1.00------------
....................................................................................................................CAGTTTTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................281.000.00-1.00-------------------------------
..........................................TCAACAAGGTGAGTGGCCGG............................................................................................................................................................................................2011.001.00----------------------------1.00----
........................................................................................................................TTTTTTTGTTTGTTTGTTTCGGGG..........................................................................................................241.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTCCCC............................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCTGAG..........................................................................................................271.000.001.00--------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................271.000.001.00--------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCCGGAG.........................................................................................................241.000.001.00--------------------------------
........................................................................................................................TTTTTTTGTTTGTTTGTTTCGGAG..........................................................................................................241.000.00-1.00-------------------------------
.....................................................................................................................AGTTTTTTTTGTTTGTTTGTTTCGC............................................................................................................251.000.001.00--------------------------------
.........................................................................................................................TTTTTTGTTTGTTTGTTTCGGGG..........................................................................................................231.000.001.00--------------------------------
......................................................................................................................GTTTTTTTTGTTTGTTTGTTCTTC............................................................................................................241.000.001.00--------------------------------
...............................................................................TCATTCTGATTTCTGTTGGCTCTATC.................................................................................................................................................261.000.001.00--------------------------------
..........................................................................................................................TTTTTGTTTGTTTGTTTCCGGAG.........................................................................................................231.000.00-1.00-------------------------------
...................................................................................TCTGATTTCTGTTGGCTCTATTTCATG............................................................................................................................................2711.001.00---------1.00-----------------------
..............................................................................................................CTAACCCAGTTTTTTTTGT.........................................................................................................................1920.500.50--0.50------------------------------
..........................................................CCGGCAGTGGAAGGC.................................................................................................................................................................................1520.500.50-------------------------------0.50-
................................................................................................................AACCCAGTTTTTTTTGT.........................................................................................................................1720.500.500.50--------------------------------
.................................................................................................................................................................................................ACTTTAGGCTGCAGTT.........................................1630.330.33--------------------------------0.33
......................................................................................GATTTCTGTTGGCTCT....................................................................................................................................................1670.140.14----------0.14----------------------
.................................................................................................................................................................................................ACTTTAGGCTGCAGT..........................................1580.120.12----------0.12----------------------

Antisense strand
GATGAGCCGGATTCTAGCACGCCATCAGCTAGTGACTAAAATTCAACAAGGTGAGTGGCCGGCAGTGGAAGGCTGTTGCTCATTCTGATTTCTGTTGGCTCTATTTCATGCTAACCCAGTTTTTTTTGTTTGTTTGTTTCCACTTTATAACATATGGATTTCTATGCCACACTACCCGTAACTTTGAAAAATAACTTTAGGCTGCAGTTTTCAGCAAACAGGACAGTCCTTAGCTGCCACATAGCTCAAC
....................................................((((((..(((((.(((((((((....((.....)).....((((((..........)))))).)))))))))....))))).....)))))).........................................................................................................
..................................................51.............................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR189784SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................TGGAAGGCTGTTGCTAGCT...................................................................................................................................................................... 192.000.00-----2.00---------------------------
....TGGCGTGCTAGAATCCGGCT.................................................................................................................................................................................................................................. 2012.002.00---------------------------1.00-1.00---
................CTAGCTGATGGCGTGC.......................................................................................................................................................................................................................... 1611.001.00-----------------1.00---------------
..................................................................................................................................................................................................................................CTATGTGGCAGCTAAGGA...... 1811.001.00------------------------1.00--------
.....GCCGGATTCTAGCACGATC.................................................................................................................................................................................................................................. 191.000.00---------------------1.00-----------
........GATGGCGTGCTAGAATCC................................................................................................................................................................................................................................ 1811.001.00----------------1.00----------------
.................................................................................................................................................................................................................................AGCTATGTGGCAGCTAAGGAC.... 2111.001.00----------1.00----------------------
..............................................................................................................................TGTTTGTTTGTTTCCATTA......................................................................................................... 191.000.00------1.00--------------------------
...............................................................................................................................................................................................................................AGCTATGTGGCAGCTAAGGACTG.... 2311.001.00--------------------------1.00------
................................................................AGCAACAGCCTTCCAC.......................................................................................................................................................................... 1630.330.33----0.33----------------------------
....................................................................................................................................................................................................................ACTGTCCTGTTTGCT....................... 1590.110.11--0.11------------------------------