ID: uc001utj.2_intron_3_0_chr13_31713245_r.3p
GENE: (14)
chr13:31713195-31713444-


(1)
AGO2.ip
(4)
B-CELL
(7)
BRAIN
(2)
BREAST
(4)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(4)
HELA
(2)
LIVER
(1)
OTHER
(7)
SKIN

Sense strand
TGTACAGATTGGGCTTCTAAGATAAAATATTTTAAGTCAATGAGAGCCATTTTCAAGGTCTCTGTGTAACAAGGCAGAGAAGCCAAATCAGAGTGCCTTCCTAGATAAGATTAGCTACCTAGTGTGAGAATACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAGGATCATCAAAATTTTTTGAGACTCCTCACAGAAACTGAAGACTGGCTGTA
...........................................................................................................................((((.((((..((...(((((.......)))))...)).(((....)))......)))).))))...............................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189782DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040012(GSM532897)
G648N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
.....................................................................................................................................CTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................67124.0024.0023.001.00-----------------------------------
...................................................................................................................................ACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................69123.0023.0015.008.00-----------------------------------
.......................................................................................................................................CTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................65115.0015.008.007.00-----------------------------------
......................................................................................................................................TCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................66112.0012.006.006.00-----------------------------------
...................................................................................................................................ACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAA...................................................68112.0012.0012.00------------------------------------
.....................................................................................................................................CTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAGT.................................................68111.0024.0011.00------------------------------------
..............................................................................................................................AGAATACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................74111.0011.00-9.00--2.00--------------------------------
........................................................................................................................................TTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................6418.008.00-8.00-----------------------------------
...........................................................................................................................GTGAGAATACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................7717.007.00-7.00-----------------------------------
.....................................................................................................................................CTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAA...................................................6616.006.00-6.00-----------------------------------
.........................................................................................................................................TTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAT..................................................636.000.006.00------------------------------------
....................................................................................................................................CCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAG..................................................6814.004.00-4.00-----------------------------------
...................................................................................................................................................................................................................................ACAGAAACTGAAGACTGGCT...2013.003.00-----1.00--1.00--------1.00-------------------
...................................................................................................................................ACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAA..................................................6913.0012.003.00------------------------------------
.......................................................................................................................................CTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAA...................................................6412.002.00-------2.00-----------------------------
...............................................................................................................................................................................................................................CCTCACAGAAACTGAAGACT.......2012.002.00---------------------1.00-----1.00---------
...............................................................................................................................................................................................................................CCTCACAGAAACTGAAGACTGGCTGTA2712.002.00---2.00---------------------------------
......................................................................................................................................................................................................................................GAAACTGAAGACTGGCTGGT201.000.00--1.00----------------------------------
.................TAAGATAAAATATTTTATAAT....................................................................................................................................................................................................................211.000.00------1.00------------------------------
.......................................................................................................................TAGTGTGAGAATACCA...................................................................................................................161.000.00------------------------1.00------------
................................................................................................................................AATACCTCTTTGTTTGT.........................................................................................................171.000.00-------------------------------1.00-----
...............................................................................................................................................................................................................................CCTCACAGAAACTGAAGACTGGC....2311.001.00-----------------------------1.00-------
.........................................................................................................................................................................................................................GAGACTCCTCACAGAAACTG.............2011.001.00---------1.00---------------------------
..........................................................................................................................................................................................................................................CTGAAGACTGGCTGTTTGA191.000.00--1.00----------------------------------
..........................................................................................................................................................................................................................................CTGAAGACTGGCTGTGG171.000.00----------------------1.00--------------
.........................................................................................................................................................................................................................GAGACTCCTCACAGAAACTGAAGACT.......2611.001.00----------------------------1.00--------
................................................................................................................................................................................................................................CTCACAGAAACTGAAGACTGGCTGT.2511.001.00---1.00---------------------------------
........................................................................................................................................................................................................................TGAGACTCCTCACAGAAACTGAAGACTGGCTG..3211.001.00----------1.00--------------------------
......................................................................................................................................................................................................................................GAAACTGAAGACTGGCTGGGT211.000.00--1.00----------------------------------
...................................................................................................................................................................................................................................ACAGAAACTGAAGACTGGCTGGTTG251.000.00---------------1.00---------------------
........................................................................................................................................................................................................................TGAGACTCCTCACAGAAACTGAAGACTGGCT...3111.001.00---------1.00---------------------------
.............................................................................................................................................TTTGTTGTGAAAAATTCTGAAGTACC...................................................................................261.000.00----------------1.00--------------------
......................................................................................................................................................................................................................................GAAACTGAAGACTGGCTGGATG221.000.00-----1.00-------------------------------
..................................................................................................................................................................................................................ATTTTTTGAGACTCCTCACAGAAACTG.............2711.001.00--------------1.00----------------------
.................................................................................................................................................................................ATATTGTCATATTTTGTGTTAAG..................................................2311.001.00-----------1.00-------------------------
............................................................................................................................................TTTTGTTGTGAAAAAACAA...........................................................................................191.000.00--------------------------1.00----------
.......................................................................................................................................................................................................................................AAACTGAAGACTGGCTGGATA211.000.00------------------------------1.00------
.................................................................................................................................ATACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTA....................................................6911.001.00----1.00--------------------------------
.....................................................................................................................................................................................................................................AGAAACTGAAGACTGGCTGGATG231.000.00--------1.00----------------------------
..............................................................................................................................................................................................................CAAAATTTTTTGAGACTCCTCACAGAAACTGAAG..........3411.001.00-------------------1.00-----------------
...................................................................................................................................................................................................................................ACAGAAACTGAAGACTGGCTGGGC241.000.00--------------------1.00----------------
........................................................................................................................................................................................................................TGAGACTCCTCACAGAAACTGAAGACT.......2711.001.00------------1.00------------------------
...........................................................................................................................................GTTTTGTTGTGAAAAATTCTGAAGTACGAG.................................................................................3011.001.00-----------------------1.00-------------
......................................................................................................................................................................................................................................GAAACTGAAGACTGGCTAATT211.000.00-------------------------1.00-----------
...........................................................................................................................................................................................................................GACTCCTCACAGAAACTGA............1911.001.00------------------1.00------------------
......................................................................................................................................................................................................................................GAAACTGAAGACTGGCTGGG201.000.00--1.00----------------------------------
....................................................................................................................................................................................................................................CAGAAACTGAAGACTGGCT...1920.500.50---------------------------------0.50---
........................................................................................................................................................................................................................................AACTGAAGACTGGCTGTA1820.500.50----------------------------------0.50--
.........................................................................................................................................................................................................ATCATCAAAATTTTTTG................................1740.500.50--------------------------------0.50----
.....................................................................................................................................................................................................................................AGAAACTGAAGACTGGCT...1830.330.33------------------------------------0.33
.........................................................................................................................................................................................................................................ACTGAAGACTGGCTGTA1730.330.33----------0.33--------------------------
.........................................................................................................................................................................................................................................ACTGAAGACTGGCTGTATGT2030.330.33-----0.33-------------------------------
.....................................................................................................................................................................................................................................AGAAACTGAAGACTGGC....1730.330.33-----------------------------------0.33-

Antisense strand
TGTACAGATTGGGCTTCTAAGATAAAATATTTTAAGTCAATGAGAGCCATTTTCAAGGTCTCTGTGTAACAAGGCAGAGAAGCCAAATCAGAGTGCCTTCCTAGATAAGATTAGCTACCTAGTGTGAGAATACCTCTTTGTTTTGTTGTGAAAAATTCTGAAGTACGAGTGCCACTAATATTGTCATATTTTGTGTTAAGGATCATCAAAATTTTTTGAGACTCCTCACAGAAACTGAAGACTGGCTGTA
...........................................................................................................................((((.((((..((...(((((.......)))))...)).(((....)))......)))).))))...............................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189782DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040012(GSM532897)
G648N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577588(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
................................................................................................................................................................................AATATTGTCATATTTGTCG....................................................... 191.000.00------1.00------------------------------
................................................................................................................................................................................................GTGTTAAGGATCATCT.......................................... 161.000.00-------------1.00-----------------------