ID: uc001uqn.1_intron_1_0_chr13_26789730_r.5p
GENE: RNF6(4)
chr13:26792448-26792697-


(1)
AGO2.ip
(4)
BRAIN
(5)
BREAST
(9)
CELL-LINE
(2)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(31)
SKIN
(1)
TESTES
(2)
UTERUS

Sense strand
GGAACAACTAGCATCTCAGCCTGACTTGAGAGATGGAACGAATTACAGAGGTACTATGGAGTCCTTTCCATAAGGAACAGGCTTGATTGGAGCACTTGCAGAAATGAAATTCTTAGACCTTGTATAGTATGTTTGTCTTCAATTTTTTCCAGTTTTAATGTGATACTCATTCAGATAATATATATATGAGTAGTAAAGCAGTATGGTTAAGCAGTATAGGACAGAGGAATGAATGCAAAGATGTCTTAAA
..............................................................................................................................((((((((((((.........((((.......)).)).........)))))).)))))).................................................................
...................................................................................................100.....................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
........................................................................................................TGAAATTCTTAGACCGG.................................................................................................................................1716.000.004.00--2.00--1.001.001.001.00-2.00----------1.00---1.00-------------------1.00------------1.00------
........................................................................................................TGAAATTCTTAGACCGGCG...............................................................................................................................1913.000.004.00--1.00--1.00---------2.00---1.00--1.00-----------1.00-------1.00----------1.00-----------
........................................................................................................TGAAATTCTTAGACCGGC................................................................................................................................1813.000.00-------1.001.00----1.00-1.00-----1.00--1.00---1.00----1.00---1.00----1.00-----1.00-------1.00---1.00-----
..AACAACTAGCATCTCAGCCTGACTTGAGAGATGGAACGAATTACAGAGGTACTATGGAGTCCTTTCCATAAGGTTT............................................................................................................................................................................766.000.00-6.00----------------------------------------------------------------
....................CTGACTTGAGAGATGGAA....................................................................................................................................................................................................................1813.003.00------------2.00-------------------------------1.00---------------------
........................................................................................................TGAAATTCTTAGACCGAG................................................................................................................................183.000.00----3.00-------------------------------------------------------------
..............................AGATGGAACGAATTACAGAGACT.....................................................................................................................................................................................................232.000.00--1.00---------------------------1.00-----------------------------------
.....................................................................................................................................................................CTCATTCAGATAATACTG...................................................................182.000.00-------------------1.00-----------------------------------1.00----------
.....................TGACTTGAGAGATGGAACGAATTACA...........................................................................................................................................................................................................2612.002.00--1.00-------1.00-------------------------------------------------------
........TAGCATCTCAGCCTGATG................................................................................................................................................................................................................................181.000.00-----------------------------------------1.00------------------------
....................CTGACTTGAGAGATGGAAC...................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------1.00---
...............TCAGCCTGACTTGAGAGATGGAACGAATT..............................................................................................................................................................................................................2911.001.00----------------------------------1.00-------------------------------
.........................TTGAGAGATGGAACGAATTACA...........................................................................................................................................................................................................2211.001.00--------------1.00---------------------------------------------------
...............................GATGGAACGAATTAC............................................................................................................................................................................................................1511.001.00-------------------------------------------------------------1.00----
.......................................................................................................................................................................................................................ATAGGACAGAGGAATATA.................181.000.00----------------------------------------1.00-------------------------
.................AGCCTGACTTGAGAGATGG......................................................................................................................................................................................................................1911.001.00----------1.00-------------------------------------------------------
.....................TGACTTGAGAGATGGAACGAATTACAGAGACTC....................................................................................................................................................................................................331.000.00-----------------------------1.00------------------------------------
........TAGCATCTCAGCCTGACCTCG.............................................................................................................................................................................................................................211.000.00-------------------------1.00----------------------------------------
.....................TGACTTGAGAGATGGAACGAATT..............................................................................................................................................................................................................2311.001.00-----1.00------------------------------------------------------------
......................GACTTGAGAGATGGAACGAATTACAGAGA.......................................................................................................................................................................................................291.000.00-----------------------------------------------1.00------------------
.........AGCATCTCAGCCTGACCGAC.............................................................................................................................................................................................................................201.000.00---------------------------------------------------------1.00--------
.....................TGACTTGAGAGATGGAATTT.................................................................................................................................................................................................................201.000.00--------------1.00---------------------------------------------------
......................GACTTGAGAGATGGAACGAATTA.............................................................................................................................................................................................................2311.001.00---------------------------1.00--------------------------------------
........................CTTGAGAGATGGAACGAATTA.............................................................................................................................................................................................................2111.001.00--------------------------------1.00---------------------------------
...............................................................................................TTGCAGAAATGAAATTCTTAGACCTT.................................................................................................................................2611.001.00---------------1.00--------------------------------------------------
.............TCTCAGCCTGACTTGAGAGATGGA.....................................................................................................................................................................................................................2411.001.00--1.00---------------------------------------------------------------
........TAGCATCTCAGCCTGACGTTG.............................................................................................................................................................................................................................211.000.00-------------------------------1.00----------------------------------
................CAGCCTGACTTGAGAGATGG......................................................................................................................................................................................................................2011.001.00-----1.00------------------------------------------------------------
.................................................................................................................................................................................................................AGCAGTATAGGACAGGTC.......................181.000.00-------------------------------------------------1.00----------------
......................................................................................................AATGAAATTCTTAGACCTT.................................................................................................................................1911.001.00---------1.00--------------------------------------------------------
..............................................................................................................................................................................................................TTAAGCAGTATAGGACAGAGGAATAATG................281.000.00-----------------1.00------------------------------------------------
.....................TGACTTGAGAGATGGAACGAA................................................................................................................................................................................................................2111.001.00---------------------------------------------------1.00--------------
.........................TTGAGAGATGGAACGAATTACAGAGA.......................................................................................................................................................................................................261.000.00----------------------------------------------------1.00-------------
.......................ACTTGAGAGATGGAACGAA................................................................................................................................................................................................................1911.001.00---------------------------------------------1.00--------------------
..................GCCTGACTTGAGAGATGGAACG..................................................................................................................................................................................................................2211.001.00--------------------------------------1.00---------------------------
..............CTCAGCCTGACTTGAGAGATGGAACGAAT...............................................................................................................................................................................................................2911.001.00------------------------------------1.00-----------------------------
...................CCTGACTTGAGAGATGGAACGAATTACAGA.........................................................................................................................................................................................................3011.001.00-------------1.00----------------------------------------------------
........................................................................................................TGAAATTCTTAGACCTCCAA..............................................................................................................................201.000.00-----------------------------------------------------1.00------------
......................GACTTGAGAGATGGAACGAATTACAGAGAC......................................................................................................................................................................................................301.000.00---------------------------------------1.00--------------------------
................................ATGGAACGAATTACAGAGACTC....................................................................................................................................................................................................221.000.00-----1.00------------------------------------------------------------
.................................................................................................................................................................................................................AGCAGTATAGGACAGAGGAATGAACG...............261.000.00--------------------------------------------------1.00---------------
...............TCAGCCTGACTTGAGAGATG.......................................................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------
.........................................................................................................................................TTCAATTTTTTCCAGCTGT..............................................................................................191.000.00-----------------1.00------------------------------------------------
...........................................................................................................................................................................CAGATAATATATATATGA.............................................................1820.500.50---------------------------------------------------------------0.50--
..............................................................................................CTTGCAGAAATGAAATTCTTAG......................................................................................................................................2220.500.50------0.50-----------------------------------------------------------
..................................................................................................CAGAAATGAAATTCTTAG......................................................................................................................................1830.330.33----------------------------------------------------------------0.33-
........................................................................................................................................................................................................................TAGGACAGAGGAATGA..................1660.170.17-----------------------------------------------------------------0.17

Antisense strand
GGAACAACTAGCATCTCAGCCTGACTTGAGAGATGGAACGAATTACAGAGGTACTATGGAGTCCTTTCCATAAGGAACAGGCTTGATTGGAGCACTTGCAGAAATGAAATTCTTAGACCTTGTATAGTATGTTTGTCTTCAATTTTTTCCAGTTTTAATGTGATACTCATTCAGATAATATATATATGAGTAGTAAAGCAGTATGGTTAAGCAGTATAGGACAGAGGAATGAATGCAAAGATGTCTTAAA
..............................................................................................................................((((((((((((.........((((.......)).)).........)))))).)))))).................................................................
...................................................................................................100.....................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
.............................................TTATGGAAAGGACTCCATAGTACCTCTG................................................................................................................................................................................. 2811.001.00----------------------------------------------------------1.00-------
...............................................................................................................................................TTTTTCCAGTTTTAACCTG........................................................................................ 191.000.00------------------1.00-----------------------------------------------