ID: uc001upe.2_intron_12_0_chr13_24874614_f.3p
GENE: (13)
chr13:24889920-24890169+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAAGTGTTACCTTCCAAGGACAGTGTCATTCTGGTTATAATCAGCTTGCTCCCCTGCCCTGAGCCTTCTGTCCAAGTTTGTGCAGGTGTGGGTCTGGGGCAGGGGACAGCTCATCCATTTCCCACTGCACGGAACAGAGGCTGTGTCCAGGGCCCCAGCAACAAAGATTTCTCCTTTGGGTTTCTGTTTCCCTCTTTCAGTTCAGAGTCTGTCATCTGAACCATGAGGATCTGGTGGCTTCTGCTTGCCA
........................................................................................................................(((...((((((........))))))...))).........(((((.......)))))........................................................................
.....................................................................................................................118..............................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189787SRR189784SRR189783SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
.................................................................................................................................................................CAAAGATTTCTCCTTTTG.......................................................................18368.000.00358.00--3.004.00----------1.00----------1.00------1.00------------
.................................................................................................................................................................CAAAGATTTCTCCTTTCG.......................................................................1831.000.0029.00--2.00------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGGG.....................................................................2025.000.001.009.00---1.001.001.001.00---1.001.00---1.00--1.001.001.00----1.00-------1.001.00-1.00-1.00-----
.................................................................................................................................................................CAAAGATTTCTCCTTTTA.......................................................................189.000.008.00---1.00-----------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGCTT...................................................................228.000.001.00-5.00------2.00------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGG.......................................................................1817.007.007.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGGCT...................................................................225.000.00-3.001.00---------------------------------------1.00---
.................................................................................................................................................................CAAAGATTTCTCCTTTTGG......................................................................195.000.003.001.00----------------------1.00---------------------
.................................................................................................................................................................CAAAGATTTCTCCTTGTG.......................................................................184.000.004.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTG........................................................................1733.333.333.00--0.33------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGGT.....................................................................203.000.00-----1.00----1.00---------------------1.00-------------
.................................................................................................................................................................CAAAGATTTCTCCTTGGG.......................................................................183.000.003.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGGCTT..................................................................232.000.00-1.00-------------------------------------1.00------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGTC.....................................................................202.000.002.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTAG.......................................................................182.000.002.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGGC....................................................................212.000.00-1.001.00-------------------------------------------
..................................................................................................................................................................AAAGATTTCTCCTTTTG.......................................................................172.000.002.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGG.....................................................................202.000.00-1.00---------------------------------------1.00----
.................................................................................................................................................................CAAAGATTTCTCCTTTC........................................................................172.000.002.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTCC.......................................................................182.000.002.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGCTTT..................................................................232.000.001.00-1.00-------------------------------------------
........................................................................................TGGGTCTGGGGCAGGG..................................................................................................................................................1601.001.00----------------1.00-----------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGTG.....................................................................201.000.001.00---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGCT....................................................................211.000.00--------1.00-------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGCCTT..................................................................231.000.00--1.00-------------------------------------------
........................................................................................................................................................................TTCTCCTTTGGGTTTATTT...............................................................191.000.00-----------------------------1.00----------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGCTTA..................................................................231.000.001.00---------------------------------------------
...........................................................................................................................................................................TCCTTTGGGTTTCTGTGT.............................................................181.000.00-----------1.00----------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTCGG......................................................................191.000.00--1.00-------------------------------------------
..........................................................................................................................CACTGCACGGAACAGAGGCT............................................................................................................2011.001.00-------------------------------------------1.00--
.................................................................................GCAGGTGTGGGTCTGTGG.......................................................................................................................................................181.000.00-----------1.00----------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTCGG.....................................................................201.000.00-------1.00--------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGGC.....................................................................201.000.00------1.00---------------------------------------
.................................................................................GCAGGTGTGGGTCTGTGTA......................................................................................................................................................191.000.00--------------1.00-------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGGGTTT...................................................................2211.001.00-------------------------1.00--------------------
....................................................................................................AGGGGACAGCTCATCGCG....................................................................................................................................181.000.00----1.00-----------------------------------------
.................................................................................................................................CGGAACAGAGGCTGTGGTCA.....................................................................................................201.000.00-----------------------1.00----------------------
.............................................................................................................................................TGTGTCCAGGGCCCCGC............................................................................................171.000.00------------------1.00---------------------------
..............................................................................................................................................................................................................GTCTGTCATCTGAACTCTG.........................191.000.00-------------------1.00--------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTTGA......................................................................191.000.00--------------------------------------------1.00-
.................................................................................................................................................................CAAAGATTTCTCCTTTGCCGA....................................................................2130.333.330.33---------------------------------------------
.................................................................................................................................................................CAAAGATTTCTCCTTTGCGTC....................................................................2130.333.33------------0.33---------------------------------

Antisense strand
CAAGTGTTACCTTCCAAGGACAGTGTCATTCTGGTTATAATCAGCTTGCTCCCCTGCCCTGAGCCTTCTGTCCAAGTTTGTGCAGGTGTGGGTCTGGGGCAGGGGACAGCTCATCCATTTCCCACTGCACGGAACAGAGGCTGTGTCCAGGGCCCCAGCAACAAAGATTTCTCCTTTGGGTTTCTGTTTCCCTCTTTCAGTTCAGAGTCTGTCATCTGAACCATGAGGATCTGGTGGCTTCTGCTTGCCA
........................................................................................................................(((...((((((........))))))...))).........(((((.......)))))........................................................................
.....................................................................................................................118..............................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189787SRR189784SRR189783SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
......................................................................................................................................................................................................AGTTCAGAGTCTGTCCTG.................................. 182.000.00-------------------------------1.00-----1.00--------
.............................................TTGCTCCCCTGCCCTGTT........................................................................................................................................................................................... 181.000.00----------------------------1.00-----------------
............................................................................TTTGTGCAGGTGTGGTG............................................................................................................................................................. 171.000.00---1.00------------------------------------------
.............................................................................................................................................................................................CCCTCTTTCAGTTCAGGA........................................... 181.000.00------------------------------1.00---------------
......................................................................................................................................................................................................AGTTCAGAGTCTGTCATCTG................................ 201.000.00----------------------------------1.00-----------
..................................................CCCCTGCCCTGAGCCTTTA..................................................................................................................................................................................... 191.000.00----------1.00-----------------------------------
......................................................ACAGAAGGCTCAGGGCA................................................................................................................................................................................... 1750.200.20---------------------------------------------0.20