ID: uc001uop.1_intron_0_0_chr13_23903624_r.3p
GENE: SACS(2)
chr13:23903574-23903823-


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CTTGGATGCGTTATTTTCTCATCAGCTGGCTCTGATCATGAATTTGTTGTAATTTTATGTTGTACTCAGTGCATTTAAGAAATGGTAGAGTATTTTAATCCTATTACTTGACTAAGAGTGTGAAGGTAGTACTTTTTAGAGTGCACTGAGTGCACTTTACATCTTTATTTAAATTTTTTTTTAACATCTTATGTTTACAGGCTTCCTGTTTGATGAAGATAGCAACGGAAAACTCAAAATGGTGGCAGTT
......................................................................................((((((((.....(((..(((((......)))))...))).)))))))).((((((((((...))))))))))...........................................................................................
......................................................................................87.....................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189785SRR343335SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189783SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336
...........................................................................................ATTTTAATCCTATTACTTGACT.........................................................................................................................................221175.00175.00147.0028.00--------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACTAAG......................................................................................................................................251135.00135.0078.0053.00-------2.001.00-1.00---------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTAACA.................................................................3384.000.00--41.0031.00-5.007.00---------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACTA........................................................................................................................................23166.0066.0054.0010.00------2.00-------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACTAA.......................................................................................................................................24136.0036.0030.006.00--------------------------------------
..........................................................................................TATTTTAATCCTATTACTTGACT.........................................................................................................................................23133.0033.0031.002.00--------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACCAAG......................................................................................................................................25119.006.00-18.00--------1.00-----------------------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAATTTTT........................................................................30114.0014.00----14.00-----------------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTAACA..................................................................3213.000.00--7.003.00-1.002.00---------------------------------
............................................................................................TTTTAATCCTATTACTTGACT.........................................................................................................................................2118.008.004.004.00--------------------------------------
..........................................................................................TATTTTAATCCTATTACTTGACTA........................................................................................................................................2417.007.007.00---------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGAC..........................................................................................................................................2116.006.006.00---------------------------------------
..................................................................................................................................................................CTTTATTTAAATTTTTTTTTAACA................................................................2415.005.001.00-1.00-2.00----1.00------------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTTAAC.................................................................3314.004.00--1.002.00-1.00----------------------------------
............................................................................AAGAAATGGTAGAGTCTGG...........................................................................................................................................................193.000.00-----------1.00----------1.00------------1.00----
.................................................TAATTTTATGTTGTACTCAGTGCATTCAAG...........................................................................................................................................................................303.000.00----3.00-----------------------------------
..........................................................................................TATTTTAATCCTATTACTTGACTAAG......................................................................................................................................2612.002.001.00--------1.00------------------------------
.....................................................................................................TATTACTTGACTAAGAGTGTGAAGG............................................................................................................................2512.002.00-----------------2.00----------------------
...........................................................................................................................................................................................................TCCTGTTTGATGAAGATAGCA..........................2112.002.00--------------------1.00------------1.00------
........................................................................................................................................................................................CATCTTATGTTTACATACT...............................................192.000.00--------1.00-1.00-----------------------------
.................................................................................ATGGTAGAGTATTTTAATCCTACT.................................................................................................................................................242.000.00-------2.00--------------------------------
.................................................................................................................................................................................................................TTGATGAAGATAGCAACGGAAAACTCA..............2712.002.00-------1.00---1.00----------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTTAACA................................................................3412.002.00---2.00------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACCAA.......................................................................................................................................2412.006.00-2.00--------------------------------------
...............................................................................................................................................................CATCTTTATTTAAATTTTTTTTTAACA................................................................2712.002.00--1.001.00------------------------------------
........................................................................ATTTAAGAAATGGTAGAGTATTTTAA........................................................................................................................................................2612.002.00----2.00-----------------------------------
...................................................................................................................................................................TTTATTTAAATTTTTTTTTAACATCTTATG.........................................................3012.002.00-----1.00------1.00---------------------------
.................................................................................................ATCCTATTACTTGACCAAG......................................................................................................................................192.000.00--------1.00-1.00-----------------------------
...........................................................................................ATTTTAATCCTATTACTTGAGT.........................................................................................................................................222.000.001.001.00--------------------------------------
...........................................................................................ATTTTAATCCTATTACTTTACT.........................................................................................................................................222.000.00-2.00--------------------------------------
.........................................................................................................................................................ACTTTACATCTTTATTTAAATTTTTTTTAACA.................................................................322.000.00--1.001.00------------------------------------
................................................................................................................................................................................................................................ACGGAAAACTCAAAATGGTGGCAG..2411.001.00---------------1.00------------------------
...........................................................TTGTACTCAGTGCATTTAAGAAATGGCAG..................................................................................................................................................................291.000.00----1.00-----------------------------------
..............................................................................................................................................................................TTTTTTTTAACATCTTAT..........................................................1831.001.000.33--------------------------------------0.67
...............................................................................................................................................................CATCTTTATTTAAATTTTTTTTAACA.................................................................261.000.00--1.00-------------------------------------
................................................................................................................................................................................................................................ACGGAAAACTCAAAATGGTGG.....2111.001.00------------------------------------1.00---
..............................................................TACTCAGTGCATTTAAGAAATGGTAGA.................................................................................................................................................................2711.001.00-----------1.00----------------------------
..............................................................................................................ACTAAGAGTGTGAAGGTAGTA.......................................................................................................................2111.001.00----------------------------1.00-----------
................................................................................AATGGTAGAGTATTTTAAT.......................................................................................................................................................1911.001.00-------------------1.00--------------------
......................................................................................................................................................................ATTTAAATTTTTTTTTAACA................................................................2011.001.00----1.00-----------------------------------
.......................................................................................................................GTGAAGGTAGTACTTTTTAGAG.............................................................................................................2211.001.00-------------------------------1.00--------
..................................................................................................................................................................................TTTTAACATCTTATGTTTACAG..................................................2211.001.00------------1.00---------------------------
...........................................................................................ATTTTAATCCTATTACTTGTCT.........................................................................................................................................221.000.00-1.00--------------------------------------
...................................................................................................................................................................TTTATTTAAATTTTTTTTTAACATCTCATG.........................................................301.000.00-1.00--------------------------------------
.........................................................................................................................................................ACTTTACATCTTTATTTAAATTTTTTTTTAACA................................................................3311.001.00---1.00------------------------------------
.......................................................................................................................................TTAGAGTGCACTGAGTGCAC...............................................................................................2011.001.00-------1.00--------------------------------
...............................................................................AAATGGTAGAGTATTTTAATCCTATCACT..............................................................................................................................................291.000.00----1.00-----------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACAA........................................................................................................................................2311.006.00-1.00--------------------------------------
.................................................................................................................AAGAGTGTGAAGGTAGTACTTTTT.................................................................................................................2411.001.00--------------------------1.00-------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAATTCTT........................................................................301.000.00----1.00-----------------------------------
............................................................................................TTTTAATCCTATTACTTGACTA........................................................................................................................................2211.001.001.00---------------------------------------
..................................................................................................................................................................CTTTATTTAAATTTTTTTTTAATTG...............................................................251.000.00------1.00---------------------------------
.........................................................................................................................................................................................................................GATAGCAACGGAAAACTCAA.............2011.001.00-----------------------1.00----------------
...........................................................................................ATTTTAATCCTATTACTTGAGTA........................................................................................................................................231.000.001.00---------------------------------------
..................................................................................................................................................................CTTTATTTAAATTTTTTTTTAACATCTTA...........................................................2911.001.00-1.00--------------------------------------
...........................................................................................................TTGACTAAGAGTGTGAAGGTAG.........................................................................................................................2211.001.00----------------------------------1.00-----
...........................................................................................ATTTTAATCCTATTACTTGACG.........................................................................................................................................2211.006.00-1.00--------------------------------------
...........................................................................................ATTTTAATCCTATTACATGA...........................................................................................................................................201.000.001.00---------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGCCTA........................................................................................................................................231.000.001.00---------------------------------------
..........................................................................................................................................................CTTTACATCTTTATTTAAATTTTTTTTTAACA................................................................3211.001.00---1.00------------------------------------
..........................................................................................TATTTTAATCCTATTACTTGACTAA.......................................................................................................................................2511.001.00-1.00--------------------------------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAATTTCT........................................................................301.000.00----1.00-----------------------------------
..............................................................................................................................................................................................................................CAACGGAAAACTCAAAATG.........1911.001.00----------------1.00-----------------------
......................................................................................................................................TTTAGAGTGCACTGAGCTGC................................................................................................201.000.00----1.00-----------------------------------
......................................................................................................................................................................ATTTAAATTTTTTTTTAACATCTTATG.........................................................2711.001.00------1.00---------------------------------
......................................................................................................................................TTTAGAGTGCACTGAGT...................................................................................................1711.001.00---------------------1.00------------------
...............................................................................................................................................................................................TGTTTACAGGCTTCCAG..........................................171.000.00-1.00--------------------------------------
..............................................................................................................ACTAAGAGTGTGAAGGTAGT........................................................................................................................2011.001.00--------------------------------------1.00-
..............................................................................................................................................................ACATCTTTATTTAAATTTTTTTTTAACA................................................................2811.001.00--1.00-------------------------------------
..........................................................................................TATTTTAATCCTATTACTTGAC..........................................................................................................................................2211.001.00-1.00--------------------------------------
..........TTATTTTCTCATCAGCTGGCTCTGATCACG..................................................................................................................................................................................................................301.000.00-1.00--------------------------------------
................................................................................................................................................................ATCTTTATTTAAATTTTTTTTTAACA................................................................2611.001.00-----1.00----------------------------------
.......................................................................................................................................................................TTTAAATTTTTTTTTAACAAATT............................................................231.000.00----1.00-----------------------------------
...............................................................................................................................AGTACTTTTTAGAGTGCACTGAGTGCAC...............................................................................................2811.001.00-------1.00--------------------------------
...........................................................................................ATTTTAATCCTATTACTTAACT.........................................................................................................................................221.000.001.00---------------------------------------
..............................................................................................................ACTAAGAGTGTGAAGGTAGTACT.....................................................................................................................2311.001.00------------------1.00---------------------
.......................AGCTGGCTCTGATCATGAATTTGTTG.........................................................................................................................................................................................................2611.001.00------------------1.00---------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTATA..................................................................321.000.00--1.00-------------------------------------
..........................................................................................TATTTTAATCCTATTACTTGACCAAG......................................................................................................................................2611.001.00--------1.00-------------------------------
....................................................TTTTATGTTGTACTCAGTGC..................................................................................................................................................................................2011.001.00-----------1.00----------------------------
...........................................................................................ATTTTAATCCTATTACTTTGCT.........................................................................................................................................221.000.001.00---------------------------------------
.............................................................................................................................................................................TTTTTTTTTAACATCTTATG.........................................................2011.001.00-1.00--------------------------------------
..........................................................................................................................................................................................TCTTATGTTTACAGGCTCCTG...........................................211.000.00-------1.00--------------------------------
............................................................................................................................................................TTACATCTTTATTTAAATTTTTT.......................................................................2311.001.001.00---------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACAAAG......................................................................................................................................2511.006.001.00---------------------------------------
............................................................................................TTTTAATCCTATTACTTGACTAA.......................................................................................................................................2311.001.00-1.00--------------------------------------
............................................................................................................................................................................................................CCTGTTTGATGAAGATAGCAACGGA.....................2511.001.00-------------------------------------1.00--
...............................................................................AAATGGTAGAGTATTTTAA........................................................................................................................................................1911.001.00-1.00--------------------------------------
...................................................................................................................................................................TTTATTTAAATTTTTTTTTAACA................................................................2311.001.00----1.00-----------------------------------
............................................................................................................................................................................ATTTTTTTTTAACATCTTAAG.........................................................211.000.00-----1.00----------------------------------
...........................................................................................ATTTTAATCCTATTACTTGACCA........................................................................................................................................2311.006.00-1.00--------------------------------------
...............TTCTCATCAGCTGGCTCTG........................................................................................................................................................................................................................1911.001.00---------------1.00------------------------
...........................................................................................ATTTTAATCCTATTACTTGACA.........................................................................................................................................2211.006.001.00---------------------------------------
..........................................................................................................................................................................................................................ATAGCAACGGAAAACTCA..............1811.001.00---------------------------1.00------------
....................................................................................................................................................AGTGCACTTTACATCTTATG..................................................................................201.000.00-----1.00----------------------------------
..............................................................................................TTAATCCTATTACTTGACTAAG......................................................................................................................................2211.001.00---------1.00------------------------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAGCG...........................................................................271.000.00----1.00-----------------------------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAATTTTTT.......................................................................3111.001.00----1.00-----------------------------------
......................................................................................................................................................................ATTTAAATTTTTTTTTAACATCTTAT..........................................................2611.001.00-1.00--------------------------------------
.......................................................................CATTTAAGAAATGGTAGAGTATTTT..........................................................................................................................................................2511.001.00-----------------------------1.00----------
...............................................................................................................................................................CATCTTTATTTAAATTTTTTTTTAACATCTTAT..........................................................3311.001.00--1.00-------------------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTAATA.................................................................331.000.00---1.00------------------------------------
...........................................................................................ATTTTAATCCTATTACTTGCCT.........................................................................................................................................221.000.001.00---------------------------------------
.........................CTGGCTCTGATCATGAATTTGTT..........................................................................................................................................................................................................2311.001.00------------------------------1.00---------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTTAA..................................................................3211.001.00------1.00---------------------------------
..........................................................................................................................................................CTTTACATCTTTATTTAAATTTTTTTTAACA.................................................................311.000.00--1.00-------------------------------------
...............................................................ACTCAGTGCATTTAAGAAATGGT....................................................................................................................................................................2311.001.00-------------------1.00--------------------
......................................................................................................................................................................ATTTAAATTTTTTTTTAACACAAG............................................................2411.001.00-----1.00----------------------------------
........................................................................................................................................................CACTTTACATCTTTATTTAAATTTTTTTTAA...................................................................311.000.00---1.00------------------------------------
.........................................................................................................................................................................................................................GATAGCAACGGAAAACTCAAAAT..........2311.001.00------------------------1.00---------------
....................................................................................................................................................AGTGCACTTTACATCTTTATTTAAATCTTT........................................................................301.000.00----1.00-----------------------------------
.................................................................................................................AAGAGTGTGAAGGTAGTACTTT...................................................................................................................2211.001.00--------------------------------1.00-------
........................................................................................................................................................CACTTTACATCTTTATTTAAA.............................................................................2111.001.00----1.00-----------------------------------
..........................................................................................TATTTTAATCCTATTACT..............................................................................................................................................1830.670.670.67---------------------------------------

Antisense strand
CTTGGATGCGTTATTTTCTCATCAGCTGGCTCTGATCATGAATTTGTTGTAATTTTATGTTGTACTCAGTGCATTTAAGAAATGGTAGAGTATTTTAATCCTATTACTTGACTAAGAGTGTGAAGGTAGTACTTTTTAGAGTGCACTGAGTGCACTTTACATCTTTATTTAAATTTTTTTTTAACATCTTATGTTTACAGGCTTCCTGTTTGATGAAGATAGCAACGGAAAACTCAAAATGGTGGCAGTT
......................................................................................((((((((.....(((..(((((......)))))...))).)))))))).((((((((((...))))))))))...........................................................................................
......................................................................................87.....................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189785SRR343335SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189783SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336
.............................................................................................................................................TGCACTGAGTGCACTTTAGGTA....................................................................................... 222.000.00-------------2.00--------------------------
......................................................................................AGAGTATTTTAATCCTATT................................................................................................................................................. 192.000.00--------------2.00-------------------------
.............................................................................................................................................TGCACTGAGTGCACTTTAGATA....................................................................................... 221.000.00-------------1.00--------------------------
.......................................................................................................................................................................................ACATCTTATGTTTACAATAG............................................... 201.000.001.00---------------------------------------
....................................................................................................................................................................................................................................AAAACTCAAAATGGTAAAT... 191.000.00----1.00-----------------------------------
...........................................................................................................................................AGTGCACTGAGTGCAACAG............................................................................................ 191.000.00-------------------------1.00--------------
........................................................................ATTTAAGAAATGGTAATTG............................................................................................................................................................... 191.000.001.00---------------------------------------
.AAAATAACGCATCCAA......................................................................................................................................................................................................................................... 1630.670.67--------0.33-0.33-----------------------------